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jalview.git
2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_ver... commit | commitdiff | tree | snapshot
2020-03-03 Jim ProcterMerge branch 'groovy/JAL-3547_conservationsequenceexpor... commit | commitdiff | tree | snapshot
2020-03-03 Jim ProcterJAL-3547 groovy script to get the conservation sequence... commit | commitdiff | tree | snapshot
2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous... commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterJAL-3407 release notes for JAL-3412 commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterJAL-3412 patch for failing test commit | commitdiff | tree | snapshot
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console commit | commitdiff | tree | snapshot
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r... commit | commitdiff | tree | snapshot
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterJAL-3407 JAL-3296 release notes commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3296changeStartInvalidateCursor... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3477 jalview.jvmmemmax / jvmmemmax maximum value... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3407 release notes for JAL-3449 JAL-3393 JAL-3420... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3541 docs for enabling OpenClover coverage reports... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3541 removed clover report generation debug flag... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3541 configurables for clover report generation... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 track own jalview.gui.Desktop clover source... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 2g heap for clover xml and clover html - remov... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 add verbose and heap setting for HTML Report... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 use javaExec to run clover tasks commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterMerge branch 'bug/JAL-3536getCrossrefTwice' into develop commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterJAL-3186 ensure transparency slider position is updated... commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterMerge branch 'features/JAL-3187_uitweaks' into develop commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 nice to have enabling/disabling of apply/cance... features/JAL-3187_uitweaks commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 i18n commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 use the recommended way of catching tab select... commit | commitdiff | tree | snapshot
2020-02-20 gmungocJAL-3187 repaint complement after loading on features commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 individual feature settings panel has revert... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3187 i18n for titles in windows/tabs commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3535 todo re titles for CDS and Protein views in... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3187 - tabbed pane is nulled when feature settings... commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresMerge branch 'develop' into improvement/JAL-3449_add_in... improvement/JAL-3449_add_install4j_installer_getdown_versions_to_jalview_console.2 commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3289 Improved the name of the channel_launch.jvl... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent... commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3337 Adding .settings/org.eclipse.jdt.core.jalview... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterMerge branch 'patch/JAL-3538_fontantialiasingbydefault... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3538 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3407 release next week :D commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3449 helper task to perform getdown digest on any dir commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3449 ensuring latest getdown jar files after merge commit | commitdiff | tree | snapshot
2020-02-18 Ben SoaresJAL-3449 merge from develop commit | commitdiff | tree | snapshot
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings... commit | commitdiff | tree | snapshot
2020-02-18 Mungo CarstairsJAL-3536 JAL-3187 don't create duplicate CDS-to-protein... bug/JAL-3536getCrossrefTwice commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3341 Increase number of lines looked at by test... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3289 Added option and documentation for a TEST... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3289 Updated doc/building.md to explain possible... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3252 download-jres.sh helper script for keeping... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3536 failing test and test data commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3534 patch for simple case (Protein or Nucleotide... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3252 tgz unpacking no longer needed by getdown... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3187 better semantics for feature settings closed... commit | commitdiff | tree | snapshot
2020-02-14 Ben SoaresJAL-3394 A little streamlining and fixing of helper... commit | commitdiff | tree | snapshot
2020-02-14 Ben SoaresJAL-3394 remove no longer used files commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3187 alternative solution - gather feature settings... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3449 getdown resilience change to launcher classpat... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3227 helper shell scripts for setting up a build... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3449 fix a getdownAppDir error introduced in previo... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3449 More tidying of build.gradle for CHANNEL selection commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 applet alignFrame needs new api method commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 first stab at ‘show CDS/Protein Settings’... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 view controller UI api method to show feature... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 convenience method on SplitContainerI to retri... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-1354 JAL-3528 report missing keys for MessageManage... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3407 release notes for JAL-3121 commit | commitdiff | tree | snapshot
2020-02-12 Ben SoaresJAL-3289 Updated doc/building.md to explain possible... commit | commitdiff | tree | snapshot
2020-02-12 Ben SoaresJAL-3523 No longer change CWD of getdown when invoked... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 release notes for JAL-3375 commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3376 highlighted in what’s new commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 - JAL-3376 JAL-3377 release notes commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 start of whats new for 2.11.1.0 commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3376 documentation for standard attributes for... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 release notes (JAL-3386 signoff, new-knowns... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 JAL-3508 move to 2.11.1.0 point release versio... commit | commitdiff | tree | snapshot
2020-02-08 Ben SoaresJAL-3179 Version fix for taskTree gradle task in gradle 6 commit | commitdiff | tree | snapshot
2020-02-03 Jim ProcterMerge branch 'task/JAL-3510-update-clover-to-4.4.1... commit | commitdiff | tree | snapshot
2020-02-03 Jim ProcterJAL-3510 JAL-3153 clover instrumentation for tests task/JAL-3510-update-clover-to-4.4.1 commit | commitdiff | tree | snapshot
2020-01-31 Ben SoaresJAL-3447 MSI installer for windows commit | commitdiff | tree | snapshot
2020-01-30 Jim ProcterJAL-3510 bump clover version in gradle build dependencies commit | commitdiff | tree | snapshot
2020-01-29 Ben SoaresJAL-3341 Increase number of lines looked at by test... commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-3341 debug for failing unit test bug/JAL-3341unitTestFails commit | commitdiff | tree | snapshot
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-3187 one more obsolete method removed commit | commitdiff | tree | snapshot
2020-01-24 Ben SoaresJAL-3394 Removed libjli.dylib symbolic link from embedd... commit | commitdiff | tree | snapshot
2020-01-24 Ben SoaresJAL-3394 Variable-ise output folders -- will work bette... commit | commitdiff | tree | snapshot
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap commit | commitdiff | tree | snapshot
2020-01-23 Ben SoaresJAL-3130 removed a debug message from build.gradle commit | commitdiff | tree | snapshot
2020-01-23 gmungocJAL-3121 update help page for GFF column 9 nested attri... commit | commitdiff | tree | snapshot
2020-01-23 Ben SoaresJAL-3130 Improved locations of AdoptOpenJDK JRE downloa... commit | commitdiff | tree | snapshot
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... commit | commitdiff | tree | snapshot
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