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jalview.git
2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque... commit | commitdiff | tree | snapshot
2016-04-29 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no... commit | commitdiff | tree | snapshot
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue... commit | commitdiff | tree | snapshot
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence commit | commitdiff | tree | snapshot
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2079 update GPL header for new Xfam tests commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling... commit | commitdiff | tree | snapshot
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterMerge branch 'bug/JAL-2080_javaws_slow_291' into develop commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2080 removed all 'Class-Path' references in libs commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2080 removed classpath references to Xerces and... commit | commitdiff | tree | snapshot
2016-04-26 Jim ProcterJAL-2080 mark jalview.jar as main jar resource commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS... commit | commitdiff | tree | snapshot
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-2071 changed extension for data column config files commit | commitdiff | tree | snapshot
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-2071 resolved fts data column config file path... commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-2071 House keeping commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-2074 removed hard-coded groovy lib path in classpath commit | commitdiff | tree | snapshot
2016-04-26 tcofoegbuJAL-2071 improvement to reduce webservice requests... commit | commitdiff | tree | snapshot
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-04-25 Jim ProcterJAL-2074 add the groovy 1.8.2 library back to classpath commit | commitdiff | tree | snapshot
2016-04-25 tcofoegbudevelop merge commit | commitdiff | tree | snapshot
2016-04-25 Jim ProcterJAL-2074 backed out groovy upgrade - back to 1.8.2 commit | commitdiff | tree | snapshot
2016-04-25 tcofoegbudevelop merge commit | commitdiff | tree | snapshot
2016-04-25 Jim ProcterJAL-2074 groovy-all didn’t get added :q commit | commitdiff | tree | snapshot
2016-04-25 Jim ProcterJAL-2074 switch to non-indy groovy to see if class... commit | commitdiff | tree | snapshot
2016-04-25 gmungocJAL-2078 fixed broken link to groovy page commit | commitdiff | tree | snapshot
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search commit | commitdiff | tree | snapshot
2016-04-25 gmungocJAL-1812 JAL-2068 only allow one Groovy console open... commit | commitdiff | tree | snapshot
2016-04-24 Jim ProcterJAL-1551 JAL-2077 formatting commit | commitdiff | tree | snapshot
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx commit | commitdiff | tree | snapshot
2016-04-24 Jim ProcterMerge branch 'JAL-2075_features_hiddeng' into develop commit | commitdiff | tree | snapshot
2016-04-24 Jim ProcterJAL-2075 test showing hidden columns bug in feature... commit | commitdiff | tree | snapshot
2016-04-24 Jim ProcterJAL-2075 refactor FeatureScoreModel to native testNG... commit | commitdiff | tree | snapshot
2016-04-24 Jim ProcterJAL-2075 make GroovyConsole a singleton so tests requir... commit | commitdiff | tree | snapshot
2016-04-23 Jim ProcterJAL-2075 fix: use AlignmentView.getVisibleContigs and... commit | commitdiff | tree | snapshot
2016-04-23 Jim ProcterJAL-2075 findPosition for SeqCigar (with test) commit | commitdiff | tree | snapshot
2016-04-23 Jim ProcterJAL-2075 formatting commit | commitdiff | tree | snapshot
2016-04-22 tcofoegbuJAL-1563 JAL-2071 Update and completed implementation... commit | commitdiff | tree | snapshot
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house... commit | commitdiff | tree | snapshot
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame... commit | commitdiff | tree | snapshot
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue commit | commitdiff | tree | snapshot
2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable... commit | commitdiff | tree | snapshot
2016-04-22 gmungocJAL-2068 Javadoc added commit | commitdiff | tree | snapshot
2016-04-22 gmungocJAL-2068 redundant implements clauses removed commit | commitdiff | tree | snapshot
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score... commit | commitdiff | tree | snapshot
2016-04-21 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-04-20 Jim ProcterMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into... commit | commitdiff | tree | snapshot
2016-04-20 Jim ProcterJAL-2074 updated URLs and removed 'how to get groovy... commit | commitdiff | tree | snapshot
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy commit | commitdiff | tree | snapshot
2016-04-20 Jim Procterfix for JAL-2072 commit | commitdiff | tree | snapshot
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... commit | commitdiff | tree | snapshot
2016-04-18 gmungocJAL-2067 fixed broken link commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur... commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-2049 small refactor of constructors to avoid code... commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-1421 type parameter added to some collections commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer... commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... commit | commitdiff | tree | snapshot
2016-04-14 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-653 test updated for 'use ID for description' commit | commitdiff | tree | snapshot
2016-04-14 gmungocJAL-1270 JAL-653 use 'parse immediately' FeaturesFile... commit | commitdiff | tree | snapshot
2016-04-14 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-14 tcofoegbuJAL-1994 Removed redistributed plugin.jar from applet... commit | commitdiff | tree | snapshot
2016-04-13 Jim ProcterJAL-2046 fix: patched SeqsetUtils so sequence features... commit | commitdiff | tree | snapshot
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug commit | commitdiff | tree | snapshot
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken... commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbuJAL-1270 Fixed failing tests due to race conditions... commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to... commit | commitdiff | tree | snapshot
2016-04-12 gmungocJAL-2050 only hide introns if exons are present! Remove... commit | commitdiff | tree | snapshot
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ... commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-1705 code/comment tidy only commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-391 help for reverse / complement options commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-1705 (new preference option to) hide introns when... commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbuRestored auto-deleted file from commit: ad54c1ae5bc1b93... commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to... commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterJAL-2053 JAL-1551 javadoc and simpler code commit | commitdiff | tree | snapshot
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo... commit | commitdiff | tree | snapshot
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