JAL-1705 code/comment tidy only

diff --git a/src/jalview/ext/ensembl/EnsemblRestClient.java b/src/jalview/ext/ensembl/EnsemblRestClient.java
index 34f8816..441ec7c 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblRestClient.java
+++ b/src/jalview/ext/ensembl/EnsemblRestClient.java
@@ -69,6 +69,12 @@ abstract class EnsemblRestClient extends EnsemblSequenceFetcher
     domain = d;
   }
 
+  /**
+   * Returns the domain name to query e.g. http://rest.ensembl.org or
+   * http://rest.ensemblgenomes.org
+   * 
+   * @return
+   */
   String getDomain()
   {
     return domain;

diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
index 0ceb29c..8fb668a 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java
+++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
@@ -36,8 +36,6 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
 {
   private static final String ALLELES = "alleles";
 
-  protected static final String CONSEQUENCE_TYPE = "consequence_type";
-
   protected static final String PARENT = "Parent";
 
   protected static final String ID = "ID";
@@ -57,7 +55,7 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
     GENOMIC("genomic"),
 
     /**
-     * type=cdna to fetch dna including UTRs
+     * type=cdna to fetch coding dna including UTRs
      */
     CDNA("cdna"),