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2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the... commit | commitdiff | tree | snapshot
2014-04-21 Jim Proctertidy imports commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset... commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterdon't finness the alignment annotation modification... commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 menu entries for different score models availa... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservatio... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 show available score matrices for use in PCA... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1355 missing message commit | commitdiff | tree | snapshot
2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation... commit | commitdiff | tree | snapshot
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to... commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterJAL-1211 - pick up site-defined defined window geometry... commit | commitdiff | tree | snapshot
2014-04-04 Jim Procterfix for JAL-1461 - check that filetype setting in brows... commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2... commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterJAL-1335 typo and 'edit' action commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-1226' into Release_2_8_1_Branch_i18n commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-1226' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-26 Jim Procterfix for JAL-1226 commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-686' into Release_2_8_1_Branch_i18n commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-686' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot... commit | commitdiff | tree | snapshot
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating... commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterJAL-1355 typo in key commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report... commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterJAL-1454 increase max for tqli iterations and throw... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-21 Jim Procterpatch for JAL-1449 - continuance of JAL-1364 - check... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for readin... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1354 typo commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1354 quoted format strings are not substituted commit | commitdiff | tree | snapshot
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta... commit | commitdiff | tree | snapshot
2014-02-20 Jim Proctertest and data for JAL-1447 commit | commitdiff | tree | snapshot
2014-02-20 Jim ProcterJAL-1447 - more flexible testing for file format Identi... commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-18 Jim Procterclear out 2.8.0b1 what's new and add JAL-1445 to list... commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1445 basic help docs for feature commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1445 JAL-1354 english strings for select by feature commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1445 (shift+) double click on feature type in deskt... commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1446 use popup event trigger instead of right-click... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 added menu items to select containing/non... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 ported routine for selecting containing/non... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 expose columnSelection setter. commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 groovy script demonstrating how to select... commit | commitdiff | tree | snapshot
2014-02-03 Jim ProcterMerge branch 'try_r20b1_merge' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... commit | commitdiff | tree | snapshot
2014-02-03 Jim ProcterJAL-1358 JWS-69 add Daniel to the list of Jalview Authors commit | commitdiff | tree | snapshot
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge commit | commitdiff | tree | snapshot
2014-02-03 Jim ProcterMerge branch 'JAL-957_jbake' into r281_JAL-957 commit | commitdiff | tree | snapshot
2014-01-31 Jalview build... JAL-1432 ensure unsigned jmol jar is actually written Release_2_8_0b1_Branch commit | commitdiff | tree | snapshot
2014-01-30 Jim ProcterJAL-1432 'whats new' and release history commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-957 reinstate jnetfile parameter commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1432 patch broken comments in css commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1432 natasha's name on applet author list commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1432 AUTHORS file and updated authors properties... commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1432 update dependency and licensing info commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1432 bump version commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet... commit | commitdiff | tree | snapshot
2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 reinstate the PDBfile parameter commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-1400 sign the jnlp for arbitrary memory commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 JAL-1400 only sign specific jar artefacts for... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 neater boilerplate link to signed/unsigned... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 shorten title for linked applets example commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 removed cruft on appletParameters page commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 make a copy of the applet/Jmol applet jars... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-1400_sandboxapp' into JAL-957_jbake commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 permissions property for example pages (jbake... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 unsigned applet demo pages created with jbake commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 tidier source and ensure permissions is explici... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 new jbake-generated example pages commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 instructions on runnning Jbake to regenerate... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 standardise formatting for example preamble commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 standard link to signed/unsigned demo pages... commit | commitdiff | tree | snapshot
2014-01-28 Jim ProcterJAL-957 tidy jbake directory commit | commitdiff | tree | snapshot
2014-01-27 Jim ProcterMerge branch 'JAL-1430_mfa_ext' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files commit | commitdiff | tree | snapshot
2014-01-21 jprocterMerge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch commit | commitdiff | tree | snapshot
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