| 2010-02-09 |
jprocter | qsort objects on integers |
commit | commitdiff | tree | snapshot |
| 2010-01-28 |
jprocter | quick fix for very broken checkin - see Mantis bug... |
commit | commitdiff | tree | snapshot |
| 2010-01-28 |
jprocter | todo for bug #0058199 |
commit | commitdiff | tree | snapshot |
| 2010-01-28 |
jprocter | more rigorous annotation row content check to limit... |
commit | commitdiff | tree | snapshot |
| 2009-11-23 |
jprocter | initialise current and defaultAlignFrame and debug... |
commit | commitdiff | tree | snapshot |
| 2009-11-13 |
jprocter | make fileparse errors easier to debug by dumping file... |
commit | commitdiff | tree | snapshot |
| 2009-11-11 |
jprocter | additional instructions and use of -jar for launching |
commit | commitdiff | tree | snapshot |
| 2009-11-09 |
jprocter | more spin on GA prompt |
commit | commitdiff | tree | snapshot |
| 2009-11-09 |
jprocter | no Vector(Vector) copy constructor in 1.2 |
commit | commitdiff | tree | snapshot |
| 2009-11-09 |
jprocter | user friendly GA and privacy statement |
commit | commitdiff | tree | snapshot |
| 2009-11-06 |
jprocter | only append score if it is not NaN |
commit | commitdiff | tree | snapshot |
| 2009-11-06 |
jprocter | properly import column selection from message |
commit | commitdiff | tree | snapshot |
| 2009-11-06 |
jprocter | potential null pointer fix |
commit | commitdiff | tree | snapshot |
| 2009-11-06 |
jprocter | setting and merging selected columns from another selec... |
commit | commitdiff | tree | snapshot |
| 2009-11-06 |
jprocter | better formed generic select residue X expression |
commit | commitdiff | tree | snapshot |
| 2009-11-04 |
jprocter | empty row removed |
commit | commitdiff | tree | snapshot |
| 2009-11-04 |
jprocter | removed duplicate descriptions, documented nodisplay... |
commit | commitdiff | tree | snapshot |
| 2009-11-03 |
jprocter | updated dependencies and versions for example jnlp |
commit | commitdiff | tree | snapshot |
| 2009-11-03 |
jprocter | pasted file contents should never be added to the recen... |
commit | commitdiff | tree | snapshot |
| 2009-11-02 |
jprocter | gracefully cope with non-standard nucleotide or amino... |
commit | commitdiff | tree | snapshot |
| 2009-11-02 |
jprocter | gracefully cope with non-standard nucleotide or amino... |
commit | commitdiff | tree | snapshot |
| 2009-10-30 |
jprocter | na pdb: highlight any part of a residue, not just the... |
commit | commitdiff | tree | snapshot |
| 2009-10-30 |
jprocter | na pdb: recognise NA residue names |
commit | commitdiff | tree | snapshot |
| 2009-10-30 |
jprocter | na pdb: detect P backbone |
commit | commitdiff | tree | snapshot |
| 2009-10-29 |
jprocter | add JGoogleAnalytics webstart resource |
commit | commitdiff | tree | snapshot |
| 2009-10-27 |
jprocter | todo |
commit | commitdiff | tree | snapshot |
| 2009-10-27 |
jprocter | typo |
commit | commitdiff | tree | snapshot |
| 2009-10-27 |
jprocter | finish privacy statement |
commit | commitdiff | tree | snapshot |
| 2009-10-27 |
jprocter | synchronized documentation between development and... |
commit | commitdiff | tree | snapshot |
| 2009-10-27 |
jprocter | fix null pointer exception in redraw for short sequence... |
commit | commitdiff | tree | snapshot |
| 2009-10-14 |
jprocter | quick fix for nullpointer in column selection when... |
commit | commitdiff | tree | snapshot |
| 2009-10-14 |
jprocter | fix from acresso for black bg in inner panel |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | fix for pfam files with empty annotation or sequence... |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | prototype Java log window and sticky configuration |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | desktop window scaled to current window geometry, proto... |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | prompt user to enable usage stats |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | added preferences for usage stats, questionnaire check... |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | use Pdb database source for fetching and warn user... |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | safer OOM handling when importing from XML |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | enact on a boolean configuration option, prompting... |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | fix potential race condition |
commit | commitdiff | tree | snapshot |
| 2009-10-13 |
jprocter | documented privacy settings, versioncheck controlled... |
commit | commitdiff | tree | snapshot |
| 2009-10-12 |
jprocter | ensure id string doesn't get set to the empty string... |
commit | commitdiff | tree | snapshot |
| 2009-10-05 |
jprocter | immediately show memory usage |
commit | commitdiff | tree | snapshot |
| 2009-09-22 |
jprocter | allow the display character below a graph to be explici... |
commit | commitdiff | tree | snapshot |
| 2009-09-10 |
jprocter | fix null pointer exception when using blosum colourscheme |
commit | commitdiff | tree | snapshot |
| 2009-09-03 |
jprocter | allow middle-button drag to change height of annotation... |
commit | commitdiff | tree | snapshot |
| 2009-08-25 |
jprocter | jga browser string: java/version (arch; os version) |
commit | commitdiff | tree | snapshot |
| 2009-08-24 |
jprocter | modified JGA module to report java+version as user... |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | 1.1 compatibility |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | render sequence logo over consensus histogram |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | single-click highlights, double click selectes th assoc... |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | group consensus/conservation calculated from start... |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | viewport setting for displaying sequence logos |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | reversed order of addition of group consensus and conse... |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | prototype make groups from selection function and shift... |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | prototype make groups from selection function |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | new sortbyPID for specific start/end region |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | race condition null pointer bugfix |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | bugfix |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | todo for 2.5 |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | null pointer exception bug fix |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | commented debug lines indicating calculation progress |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | start/stop for per-group consensus calculation |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | store symbol profile and extract it for display |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | pir format ambiguity and todo regarding 'format overrid... |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | basic implementation of profile display and todos |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | todo |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | routines for creating groups over an alignment |
commit | commitdiff | tree | snapshot |
| 2009-08-21 |
jprocter | asparagine is polar but not charged |
commit | commitdiff | tree | snapshot |
| 2009-08-03 |
jprocter | fix feature creation for selected region beyond end... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | explicitly grab all permissions for application executi... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | update annotation when group state is changed |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | show group annotation menu entries |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | colour by label prototype flag |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | catch null pointer exception in headless context |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | get consensus sequence and set ignore gaps flag for... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | annotation update method synchronises group annotation |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | headless warning messages, prototype group annotation... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | refactored conservation thread, added showgroupannotati... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | conservation thread refactored from AlignViewport |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | feature colour by label flag/style |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | headless test |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | todo |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | implement new insert annotation row method and ensure... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | insert annotation at specific position |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | optional sequencegroup ref for annotation row |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | sequence groups carry their own conservation and consen... |
commit | commitdiff | tree | snapshot |
| 2009-07-24 |
jprocter | complete alignment annotation row procedure |
commit | commitdiff | tree | snapshot |
| 2009-06-24 |
jprocter | ensure annotation row height is honoured for new VAMSAS... |
commit | commitdiff | tree | snapshot |
| 2009-06-24 |
jprocter | all alignment sequences associated with a dataset seque... |
commit | commitdiff | tree | snapshot |
| 2009-06-24 |
jprocter | can use whitespace, comma or semicolon to separate IDs |
commit | commitdiff | tree | snapshot |
| 2009-06-24 |
jprocter | fix to cope with EMBL records containing a CDS fragment... |
commit | commitdiff | tree | snapshot |
| 2009-06-24 |
jprocter | take the average of the three consecutive codon sites... |
commit | commitdiff | tree | snapshot |
| 2009-06-19 |
jprocter | implementation error warning todo |
commit | commitdiff | tree | snapshot |
| 2009-06-19 |
jprocter | debug and cyclefix for dbrefs with embedded sequences |
commit | commitdiff | tree | snapshot |
| 2009-06-19 |
jprocter | javadoc and datastoreitem registry support for binding... |
commit | commitdiff | tree | snapshot |
| 2009-06-19 |
jprocter | more efficient synchronized methods |
commit | commitdiff | tree | snapshot |
| 2009-06-19 |
jprocter | bugfix mapped reference transfer and made picr ID retri... |
commit | commitdiff | tree | snapshot |
| 2009-06-19 |
jprocter | selection handler and sender bugfix |
commit | commitdiff | tree | snapshot |
| next |
git://source.jalview.org / jalview.git / shortlog