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jalview.git
2017-11-15
kiramt
JAL-2831 ported to applet
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2017-11-14
kiramt
JAL-2831 tidies and tests
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2017-11-14
kjvdheide
JAL-2805 viewport is passed along to the tree parser
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2017-11-14
kjvdheide
JAL-2795 added duplication check when calculated nodes...
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2017-11-14
kjvdheide
JAL-2805 added getters for hashmaps filled with associa...
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2017-11-14
kjvdheide
JAL-2805 added static method for logging duplications...
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2017-11-14
kjvdheide
JAL-2805 more sensible interface method params
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2017-11-14
kiramt
JAL-2831 tidy
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2017-11-14
kjvdheide
JAL-2805 finished up interface comments
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2017-11-14
kjvdheide
JAL-2805 re-enabled one2many checks
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2017-11-14
kjvdheide
JAL-2805 interface comments, progress on associating...
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2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-14
kiramt
JAL-2811 Changed to overlay on via graphics context...
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2017-11-14
kiramt
JAL-2811 Missed commit
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2017-11-14
kiramt
JAL-2811 Made it work for hidden columns/seqs too
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2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
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2017-11-14
Jim Procter
JAL-2758 update uniprot retrieval test
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2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
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2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
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2017-11-14
kiramt
Merge branch 'imp/JAL-2774' into bug/JAL-2831
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2017-11-13
Jim Procter
JAL-2758 release notes
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2017-11-13
Jim Procter
JAL-2698 formatting
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2017-11-13
kjvdheide
JAL-2805 interface comments
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2017-11-13
kjvdheide
JAL-2805 some more name changes
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2017-11-13
kjvdheide
JAL-2805 more name changes for clarity
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2017-11-13
kjvdheide
JAL-2805 more interface name changing
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2017-11-13
kjvdheide
JAL-2805 name changed of interfaces for consistency
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2017-11-13
kjvdheide
JAL-2805 Jalview sequence binding interface expanded
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2017-11-13
kjvdheide
JAL-2805 TreeParser now interface based
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2017-11-13
kiramt
JAL-2811 Tidy
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2017-11-13
kjvdheide
JAL-2805 Added tree building interface
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2017-11-13
kjvdheide
JAL-2805 name change
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2017-11-13
kjvdheide
JAL-2805 deleted old Aptx class for loading just Newick...
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2017-11-13
kjvdheide
JAL-2805 more interface work
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2017-11-13
kjvdheide
JAL-2794 removed unused interface
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2017-11-13
kjvdheide
JAL-2805 undid accidental double (buggy) binding, more...
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2017-11-13
Jim Procter
Merge branch 'features/JAL-2758_shorteruniprot' into...
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2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
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2017-11-13
Jim Procter
JAL-2758 typo
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2017-11-13
kiramt
JAl-2811 Working for wrapped panels too
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2017-11-13
gmungoc
JAL-2662 tweak README, format code
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2017-11-13
Jim Procter
JAL-2698 what's new...
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2017-11-13
kiramt
JAL-2811 Add layer for cursor in SeqCanvas
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2017-11-13
kjvdheide
JAL-2805 warning messages added if Forester detects...
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2017-11-13
Jim Procter
JAL-2810 release notes
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2017-11-13
Jim Procter
Merge branch 'imp/JAL-2810_ftsIDtab' into develop
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2017-11-13
kjvdheide
JAL-2805 First try at loading tree through Forester...
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2017-11-13
Jim Procter
JAL-2698 stub for 2.10.3 new known issues entries
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2017-11-13
Jim Procter
JAL-2702 groovy interpreter update and java 9 jnlp...
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2017-11-13
Jim Procter
Merge branch 'bug/JAL-2702_groovyconsoleJava9' into...
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2017-11-13
Jim Procter
JAL-2702 --illegal-access=warn for JVM launch
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2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
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2017-11-13
Jim Procter
JAL-2702 update to groovy 2.4.12
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2017-11-13
Jim Procter
JAL-2810 updated help docs for auto search checkbox...
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2017-11-13
kiramt
JAL-2784 new checks for gg==null
bug/JAL-2784
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2017-11-13
Jim Procter
JAL-2810 updated screenshots in documentation
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2017-11-13
Jim Procter
JAL-2810 auto search checkbox state stored as user...
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2017-11-13
gmungoc
JAL-2679 example accession changed to CAD01290
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2017-11-13
Jim Procter
JAL-2810 mainFramTabs -> tabs
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2017-11-13
Jim Procter
JAL-2810 simpler tooltip (assume user will work out...
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2017-11-10
Jim Procter
JAL-2828 allow CalcId to match on String equivalence...
doc/JAL-2494_JAL-2828_mergefindAnnotation
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2017-11-10
Jim Procter
JAL-2828 refactored duplicate code for searching lists...
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2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
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2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
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2017-11-10
kjvdheide
JAL-2794 reorganized node select code, added subtree...
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2017-11-10
gmungoc
JAL-2829 unit tests for failing cases
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2017-11-10
kjvdheide
JAL-2794 comments comments comments
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2017-11-10
kjvdheide
JAL-2794 most method parameters/class variables made...
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2017-11-10
kjvdheide
JAL-2794 comments, selected node now doesn't have to...
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2017-11-10
kiramt
JAL-2827 related fixes for stem and non-canonical annot...
bug/JAL-2827
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2017-11-09
kiramt
JAL-2827 Fix notched repaint of helix annotation when...
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2017-11-09
kjvdheide
JAL-2794 PaintRefresher support, Aptx node selection...
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2017-11-09
kjvdheide
JAL-2794 interface comment
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2017-11-09
kjvdheide
JAL-2794 Made HashMap with Nodes as keys and sequences...
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2017-11-08
kjvdheide
JAL-2794 Aptx instances get their parent alignment...
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2017-11-08
kjvdheide
JAL-2794 Cleaning up tree conversion, sequences are...
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2017-11-08
kjvdheide
JAL-2794 getters and setters for finding nodes in fores...
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2017-11-08
kjvdheide
JAL-2795 created static class for forester conversions
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2017-11-08
kjvdheide
JAL-2794 Interface name change (oops)
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2017-11-08
kjvdheide
JAL-2794 made JalviewTreeViewerBinding an interface
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2017-11-08
kjvdheide
JAL-2794 Added getter for AlignmentViewport to TreeBuilder
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2017-11-08
Jim Procter
Merge branch 'bug/JAL-2742' into develop
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2017-11-08
Jim Procter
Revert "JAL-2742 release notes - pending confirmation...
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2017-11-08
Jim Procter
JAL-2225 release note
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2017-11-08
Jim Procter
Merge branch 'bug/JAL-2225mapMultipleChains' into develop
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2017-11-08
Jim Procter
Merge branch 'develop' into bug/JAL-2225mapMultipleChains
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2017-11-07
Jim Procter
JAL-2698 14 Nov 2017 release date for 2.10.3
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2017-11-07
Jim Procter
JAL-2775 release notes
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2017-11-07
Jim Procter
Merge branch 'imp/JAL-2775' into develop
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2017-11-07
Jim Procter
JAL-2810 i18n tab label
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2017-11-07
kiramt
JAL-2774 Added javadoc for new event parameters
imp/JAL-2774
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2017-11-07
Jim Procter
JAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher...
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2017-11-07
Jim Procter
JAL-2810 working back button shown for bulk ID retrieva...
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2017-11-07
kiramt
JAL-2774 Fix fastpaint of wrapped alignment
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2017-11-07
kiramt
JAL-2821 refactored drawPartialGroupOutline
bug/JAL-2821
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2017-11-07
Jim Procter
JAL-2810 bulk fetch for PDB IDs
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2017-11-07
Jim Procter
JAL-2804 clearer tooltip for autosearch checkbox
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2017-11-06
kjvdheide
JAL-2794 simplified/clarified associating leaves to...
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2017-11-06
Jim Procter
JAL-2756 release notes
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