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jalview.git
2016-08-02
Jim Procter
JAL-2046 additional logic to suppress spurious implemen...
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2016-08-02
Jim Procter
Merge branch 'efficiency/JAL-2034_JAL-1421' into develop
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2016-08-02
Jim Procter
JAL-2034 show greyed out image during overview update
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-01
Jim Procter
JAL-2164 TODO: make test pass for JMOL_PARSER
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2016-08-01
Jim Procter
JAL-2164 JAL-1919 JAL-1270 use structure import setting...
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2016-08-01
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-08-01
tcofoegbu
JAL-2164 bugfix to convert insCodes of '\000' to '...
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2016-08-01
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into develop
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-2164 prevent jalview news from opening
task/JAL-2164_mcviewforoldjalviewprojects
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2016-08-01
Jim Procter
JAL-2164 clear the desktop before testStoreAndRecoverEx...
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
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2016-07-29
Jim Procter
JAL-1772 JAL-2164 make expanded view save/restore test...
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2016-07-29
Jim Procter
JAL-2164 JAL-1772 explodeViews can be static, so make...
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2016-07-29
tcofoegbu
JAL-1957 JAL-1479 updated SIFTS user docs
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2016-07-29
Jim Procter
JAL-2164 revert tests depending on import of legacy...
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2016-07-29
Jim Procter
JAL-2154 disable visual delay only after completed...
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2016-07-29
Jim Procter
JAL-2154 register any new dataset codon frames only...
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2016-07-29
Jim Procter
JAL-2154 only include mappings in dbref/alcodon in...
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2016-07-29
tcofoegbu
JAL-2157 fixed Jalview2xmlTest
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2016-07-27
Jim Procter
JAL-2154 toString for forward references
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2016-07-27
Jim Procter
Merge branch 'patch/JAL-2156_JAL-2163_saveSplitFrameFro...
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2016-07-27
Jim Procter
JAL-2163 set title for the alignframe from restored...
patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles
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2016-07-27
Jim Procter
JAL-2156 resolve and add complementary views for saveAl...
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2016-07-27
Jim Procter
JAL-2156 refactor saveState & saveAlignment to common...
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2016-07-27
Jim Procter
JAL-2156 getter for AlignFrame(s) held in a splitframe
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2016-07-27
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-07-27
tcofoegbu
JAL-1919 added codes for End-2-End scan for sequence...
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2016-07-26
Jim Procter
JAL-2157 todo: verify parser/file format enums and...
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2016-07-26
tcofoegbu
JAL-2157 bugfix for issues from enum refactoring
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2016-07-25
tcofoegbu
JAL-2157 bugfix for regression from commit 82a6c8e2e25b...
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2016-07-24
Jim Procter
JAL-2154 formatting
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2016-07-24
Jim Procter
JAL-2154 keep track of incomplete sequences and report...
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2016-07-24
Jim Procter
JAL-2154 systematic pattern for defining/resolving...
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2016-07-23
Jim Procter
JAL-2154 patch the hack (Jalview2XML tests pass)
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2016-07-22
tcofoegbu
JAL-2148 Bugfix in structureImportSettings string-to...
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2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
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2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
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2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-07-20
gmungoc
JAL-2154 poke JSeq start/end into Vamsas sequence
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 fix name for flag controlling additio...
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 don’t use PDB database constant as...
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA...
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 remove startRes/endRes fields - not...
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2016-07-20
gmungoc
JAL-2023 stronger check for whether to start cdna consensus
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2016-07-20
gmungoc
JAL-2023 avoid writing / loading empty mappings
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2016-07-20
gmungoc
JAL-2023 JAL-1681 fixed bug in computing '+' for co...
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2016-07-20
gmungoc
JAL-2068 AnnotationWorker create/update annotation...
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2016-07-19
gmungoc
JAL-2068 small refactor to reuse shared method
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2016-07-19
gmungoc
JAL-2068 update rather than recreate AlignmentAnnotatio...
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2016-07-19
gmungoc
JAL-391 corrected handling of gapped sequences
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2016-07-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
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2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-07-18
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-07-18
Jim Procter
JAL-666 patch JAL-1947 in applet where overview is...
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2016-07-18
gmungoc
JAL-2105 check content of Ensembl REST ping response
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2016-07-18
gmungoc
JAL-2099 ensure initial setting of scaleAbove reaches...
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2016-07-18
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-07-18
gmungoc
JAL-2099 JAL-2100 port scale number / hidden column...
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2016-07-18
Jim Procter
JAL-2068 clearer instructions on how to use script...
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2016-07-18
Jim Procter
JAL-2068 clarify comments
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2016-07-18
Jim Procter
JAL-2068 scale annotation display character to width...
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2016-07-18
Jim Procter
JAL-2121 cleanup TODO
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2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
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2016-07-18
gmungoc
JAL-1976 Spanish version of new message
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2016-07-18
gmungoc
JAL-2015 restore check for null colour in paint()
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2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
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2016-07-18
Jim Procter
JAL-2145 improvement: ensure conservation calculation...
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2016-07-18
Jim Procter
JAL-2145 documentation of getWidth()
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2016-07-18
Jim Procter
JAL-2145 JAL-1551 formatting
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2016-07-18
Jim Procter
JAL-2145 fix: build alignments before building AlignFra...
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2016-07-14
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-07-14
tcofoegbu
JAL-1919 house-keeping
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2016-07-14
Jim Procter
fix for JAL-2147
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2016-07-14
Jim Procter
JAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
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2016-07-14
Jim Procter
JAL-1115 change implementation to avoid possibility...
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2016-07-14
Jim Procter
JAL-1270 test coverage TODO Alignment.append(AlignmentI)
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2016-07-14
Jim Procter
JAL-2110 JAL-2147 JAL-2145 - pad CDS alignment reconstr...
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2016-07-13
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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2016-07-13
Jim Procter
Merge branch 'develop' into features/JAL-2110_crossRefD...
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2016-07-13
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-07-13
tcofoegbu
JAL-2135 minor house-keeping
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2016-07-12
Jim Procter
JAL-2144 TODO - new methods for canonicalisation and...
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2016-07-12
Jim Procter
JAL-2110 avoid potential race condition where user...
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2016-07-12
Jim Procter
JAL-2110 TODO for JAL-2131
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2016-07-12
Jim Procter
JAL-2110 note about use case for when alignAsSameSequen...
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2016-07-12
Jim Procter
JAL-2110 test demonstrating limitation of current imple...
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2016-07-12
Jim Procter
JAL-2110 javadoc and TODO re shortcomings of implementation
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2016-07-12
Jim Procter
JAL-2110 javadoc
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2016-07-12
Jim Procter
JAL-2110 scalability todo
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2016-07-12
Jim Procter
JAL-1381 JAL-2110 efficiency TODO
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2016-07-12
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-07-12
Jim Procter
JAL-1369 release notes for patch of save/restore repres...
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2016-07-12
tcofoegbu
JAL-2135 NPE bugfix when parsing a structure file with...
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2016-07-09
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
features/JAL-2110_crossRefDuplications
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