JAL-2110 scalability todo

diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java
index 37f225c..e2f6749 100644 (file)
--- a/src/jalview/analysis/AlignmentUtils.java
+++ b/src/jalview/analysis/AlignmentUtils.java
@@ -2552,6 +2552,7 @@ public class AlignmentUtils
     int width = columnMap.size();
     char gap = unaligned.getGapCharacter();
     int realignedCount = 0;
+    // TODO: verify this loop scales sensibly for very wide/high alignments
 
     for (SequenceI seq : unaligned.getSequences())
     {