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jalview.git
2017-06-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
bug/JAL-2591
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2017-06-15
gmungoc
JAL-2418 typos
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2017-06-15
gmungoc
Merge branch 'bug/JAL-2589gapColour' into develop
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2017-06-12
gmungoc
JAL-2577 mirror select/hide by annotation in split...
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2017-06-12
kiramt
JAL-2591 Updates following code review
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2017-06-12
gmungoc
JAL-2577 mirror hide/select columns by annotation acros...
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2017-06-11
Jim Procter
JAL-2418 updated release branch/version and release...
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2017-06-09
gmungoc
JAL-2589 render colour scheme gap colour in overview
bug/JAL-2589gapColour
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2017-06-09
gmungoc
JAL-2594 avoid stack trace creating feature on gapped...
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2017-06-08
kiramt
Merge branch 'bug/JAL-2586' into develop
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2017-06-08
kiramt
JAL-2586 Clarification to URL link code
bug/JAL-2586
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2017-06-08
kiramt
JAL-2591 made redraw volatile
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2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
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2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
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2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
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2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
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2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
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2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
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2017-06-07
kiramt
JAL-2591 Overview changes ported to applet
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2017-06-07
kiramt
JAL-2591 More rationalising of hiddencols
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2017-06-07
kiramt
JAL-2591 Increased granularity of overview panel update...
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2017-06-07
kiramt
JAL-2591 simplifying hidden columns usage
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2017-06-06
kiramt
JAL-2591 Removed getHiddenRegions()==null checks which...
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2017-06-06
kiramt
JAL-2591 Added readwrite locking on HiddenColumns
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2017-06-06
gmungoc
JAL-2589 correct colour for Gap in Score and User Defin...
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2017-06-06
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2576'...
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2017-06-05
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-06-05
Jim Procter
JAL-2590 release notes
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2017-06-05
Jim Procter
Merge branch 'bug/JAL-2590' into develop
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2017-06-05
Jim Procter
JAL-2590 patch for rendering eggnog trees with polytomi...
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2017-06-05
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-06-05
Jim Procter
JAL-2576 release notes
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2017-06-05
Jim Procter
Merge branch 'bug/JAL-2576' into develop
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2017-06-05
Jim Procter
Merge branch 'bug/JAL-2586' into develop
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2017-06-05
kiramt
JAL-2586 Checkstyle flagged fix of unintended fall...
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2017-06-05
kiramt
JAL-2571 Missed (alwaysRun=true) for @BeforeMethod
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2017-06-04
Jim Procter
JAL-2228 java 1.7 compliance
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2017-06-04
Jim Procter
JAL-2291 updated docs
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2017-06-04
Jim Procter
JAL-2291 only hide/show columns intersecting with curre...
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2017-06-04
Jim Procter
JAL-2291 get bitset representing hidden columns
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2017-06-04
Jim Procter
JAL-2291 use HiddenColumns.hideMarkedBits and take...
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2017-06-04
Jim Procter
JAL-2291 method taking a BitSet for hiding columns
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2017-06-04
Jim Procter
JAL-2291 bug fix - BitSet.set is [start,end+1)
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2017-06-04
Jim Procter
JAL-2291 fixed broken asserts for SequenceI.getInsertio...
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2017-06-04
Jim Procter
JAL-2291 ‘Hide Insertions’ now operates on selection...
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2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
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2017-06-04
Jim Procter
JAL-2582 comment about IDs being lost if they resembl...
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2017-06-04
Jim Procter
JAL-2582 recognise ENS…P peptide IDs and make two getPa...
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2017-06-02
Jim Procter
Merge branch 'bug/JAL-2578' into develop
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2017-06-02
Jim Procter
Merge branch 'bug/JAL-2577' into develop
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2017-06-02
Jim Procter
Merge branch 'features/JAL-2228_featureSetCounts_minRan...
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2017-06-02
tcofoegbu
JAL-2473 revised default minimum dimension for Alignmen...
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2017-06-02
Jim Procter
JAL-2228 always create zero score annotations, since...
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2017-06-02
Jim Procter
JAL-2228 always set minimum for count to zero for annot...
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2017-06-02
kiramt
JAL-2576 Proposed fix
bug/JAL-2576
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2017-06-02
kiramt
JAL-2577 Don't allow viewport ranges below 0. Unit...
bug/JAL-2577
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2017-06-02
kiramt
JAL-2578 Moved hidden columns reveal to before selectio...
bug/JAL-2578
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2017-06-01
Jim Procter
Merge branch 'features/JAL-1648_cache_user_inputs'...
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2017-05-31
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-31
Jim Procter
JAL-2418 release notes for JAL-2547, JAL-2563, JAL...
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2017-05-31
Jim Procter
Merge branch 'JAL-2571' into develop
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2017-05-31
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-31
Jim Procter
JAL-2398 - updated groovy script for direct field modif...
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2017-05-31
Jim Procter
JAL-2418 JAL-2563 release notes
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2017-05-31
Jim Procter
JAL-2418 typo
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2017-05-31
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_rele...
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2017-05-31
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2017-05-31
tcofoegbu
JAL-2375 fix unit test to reflect improvement
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2017-05-31
tcofoegbu
Fixed failing tests
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2017-05-31
tcofoegbu
JAL-2533 updated unit test to reflect improvement
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2017-05-31
gmungoc
JAL-2547 handle contact features 'around' a gap correctly
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2017-05-30
kiramt
JAL-2573 Fixes for alignment < viewport width, and...
JAL-2571
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2017-05-30
gmungoc
JAL-2547 tooltip/AmendFeatures on gap straddled by...
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2017-05-30
kiramt
JAL-2571 Corrected alignment width/height checks to...
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2017-05-30
gmungoc
JAL-2570 don't zap group colour scheme when mapping...
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2034contextchange' into develop
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2017-05-29
Jim Procter
JAL-2388 release notes
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2017-05-29
tcofoegbu
JAL-1648 improvement on finder searchbox keyboard contr...
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2017-05-29
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29
Jim Procter
JAL-2520 properly documented as a fixed bug in release...
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2017-05-29
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29
Jim Procter
JAL-2465,JAL-2520,JAL-2533 release notes
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-29
Jim Procter
JAL-2533 update javadoc
features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url
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2017-05-29
Jim Procter
JAL-2465 fixed groups for JmolViewerTest.testStructureL...
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2017-05-29
tcofoegbu
JAL-1648 code fix - enter key should pick selected...
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
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2017-05-29
Jim Procter
JAL-2536 tweak javadoc wording
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2017-05-29
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29
Jim Procter
JAL-2517 release notes
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2517cancelAppletColour' into...
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2017-05-29
Jim Procter
release notes
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2017-05-29
Jim Procter
JAL-2418 updated JABAWS server in what’s new
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2017-05-29
Jim Procter
JAL-2491 JAL-2526 JAL-2566 JAL-2563 JAL-2547 release...
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2017-05-27
Jim Procter
Merge branch 'bug/JAL-2491' into develop
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2017-05-27
Jim Procter
Merge branch 'bug/JAL-2547tooltipOnGap' into develop
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2017-05-27
Jim Procter
Merge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27
Jim Procter
JAL-2563 failing test to verify SetStatus returns posit...
task/JAL-2562_SequenceI.findPosition
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2017-05-27
Jim Procter
JAL-2563 test to verify SetStatus returns -1 so mouseOv...
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2017-05-27
Jim Procter
Merge branch 'task/JAL-2562_SequenceI.findPosition...
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