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jalview.git
2022-06-03 Jim ProcterJAL-1953 fix test and expected for canonical name for... features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 commit | commitdiff | tree | snapshot
2022-06-03 Jim ProcterJAL-1953 update canonical db test for PFAM canonical... commit | commitdiff | tree | snapshot
2022-06-03 Jim ProcterJAL-1953 JAL-2889 don’t read additional lines when... commit | commitdiff | tree | snapshot
2022-06-03 Jim ProcterJAL-4021 todo & fix FileFormat tests commit | commitdiff | tree | snapshot
2022-06-03 Jim ProcterJAL-1953 2.11.2 with Archeopteryx! commit | commitdiff | tree | snapshot
2022-06-02 Jim ProcterRevert "JAL-2799 all tabs now get mouse listeners and... commit | commitdiff | tree | snapshot
2022-06-02 Jim Procterminimal fixes - probably not valid since forester jar... commit | commitdiff | tree | snapshot
2022-06-02 Jim ProcterMerge branch 'kjvdh/features/PhylogenyViewer_tabbedsupp... commit | commitdiff | tree | snapshot
2022-05-11 Jim ProcterMerge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into... commit | commitdiff | tree | snapshot
2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3 commit | commitdiff | tree | snapshot
2022-05-10 Jim ProcterJAL-4008 update jabaws client to 2.2.1 - definitely... patch/JAL-4008_jabaws_2_2_1_patch commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3365_extendedDSSP_via_stockholm... commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterMerge branch 'task/JAL-3992_update_docs' into bug/JAL... bug/JAL-3365_extendedDSSP_via_stockholm commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterJAL-3992 fix path commit | commitdiff | tree | snapshot
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... commit | commitdiff | tree | snapshot
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in... commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 release notes and what’s new Release_2_11_2_1 commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d... commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3983 release note for JAL-3985 commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterMerge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS... commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3085 update tests and mock responses, new P0dtd1... commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3985 formatting commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3976 fix mock PDBFTS query & responses patch/JAL-3976_3dbeaconsnull commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 known issue note for JAL-3984 commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 release notes for JAL-3975 and known issue... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterMerge branch 'bug/JAL-360+JAL-3975_keyboard_input_lost_... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog... commit | commitdiff | tree | snapshot
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 update release notes for JAL-3973 commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3973 exclude the original RELEASE file so gradle... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterMerge branch 'bug/JAL-3973_source_tarball_not_building... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 release 2.11.2.1 date and release notes commit | commitdiff | tree | snapshot
2022-03-25 Jim ProcterJAL-3980 JAL-3979 TODOs bug/JAL-3980_JAL-3981_tooltips_sequence_details commit | commitdiff | tree | snapshot
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug commit | commitdiff | tree | snapshot
2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps commit | commitdiff | tree | snapshot
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's... commit | commitdiff | tree | snapshot
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing commit | commitdiff | tree | snapshot
2022-03-23 Jim ProcterJAL-3976 update tests commit | commitdiff | tree | snapshot
2022-03-13 Ben SoaresAppend git.hash and git.branch to RELEASE file stored... commit | commitdiff | tree | snapshot
2022-03-11 Ben SoaresJAL-3973 This fixes the gradle build when not in a... commit | commitdiff | tree | snapshot
2022-03-10 Jalview Development... Merge branch 'master' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-10 Jalview Development... Merge branch 'develop' into releases/Release_2_11_2_Branch Release_2_11_2_0 commit | commitdiff | tree | snapshot
2022-03-10 Jalview Development... JAL-3746 bump release date to 10th March - after UoD... commit | commitdiff | tree | snapshot
2022-03-10 Jalview Development... JAL-3796 include entitlements when codesigning for... commit | commitdiff | tree | snapshot
2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-09 Jalview Development... JAL-3796 commit jni lib in Jmol library that is signed... commit | commitdiff | tree | snapshot
2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-09 Jim ProcterJAL-3746 JAL-3841 fix README typo commit | commitdiff | tree | snapshot
2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-09 Jim ProcterJAL-3746 more docs tweaking and release notes commit | commitdiff | tree | snapshot
2022-03-09 Jim ProcterMerge branch 'spike/try_spotless_JAL-3438' into develop commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3746 apply copyright to tests spike/try_spotless_JAL-3438 commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3746 apply copyright to source commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3746 JAL-3841 new README and finalising 2.11.2... commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3746 new release date for 2.11.2 commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterJAL-3746 JAL-3103 java.awt.Desktop.showURL method mecha... commit | commitdiff | tree | snapshot
2022-03-08 Jim ProcterMerge branch 'bug/JAL-3103_browser_launcher_problems_ma... commit | commitdiff | tree | snapshot
2022-03-08 Ben SoaresJAL-3103 updated help doc to remove default browser... commit | commitdiff | tree | snapshot
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser commit | commitdiff | tree | snapshot
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... commit | commitdiff | tree | snapshot
2022-03-08 Ben SoaresJAL-3103 add BrowserLauncher2 LGPLv2.1 to THIRDPARTYLIBS commit | commitdiff | tree | snapshot
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... commit | commitdiff | tree | snapshot
2022-03-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-07 Jim ProcterJAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881... commit | commitdiff | tree | snapshot
2022-03-07 Jim ProcterJAL-3685 - two single quotes when replacements are... commit | commitdiff | tree | snapshot
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3647 release notes for hdpi/laf scaling JAL-3608... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3746 structure mapping preference docs for JAL... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3608 JAL-3830 tweaked the what’s new text and updat... commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterJAL-3608 JAL-3830 simplified command line docs a bit commit | commitdiff | tree | snapshot
2022-03-04 Jim ProcterMerge branch 'doc/JAL-3608+JAL-3830_added_to_help_docs... commit | commitdiff | tree | snapshot
2022-03-04 Ben SoaresJAL-3830 added command line to whatsnew and releases commit | commitdiff | tree | snapshot
2022-03-04 Ben SoaresJAL-3830 Added new command line usage to docs commit | commitdiff | tree | snapshot
2022-03-04 Ben SoaresJAL-3608 added to LaF documentation commit | commitdiff | tree | snapshot
2022-03-03 Ben SoaresJAL-3830 fix broken/buggy install4j9 setting of execute... commit | commitdiff | tree | snapshot
2022-03-02 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
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