merge from 2_4_Release branch
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8571 AlignedCodonFrame.java
-rwxr-xr-x 18032 Alignment.java
-rwxr-xr-x 18721 AlignmentAnnotation.java
-rwxr-xr-x 9271 AlignmentI.java
-rwxr-xr-x 7553 AlignmentOrder.java
-rw-r--r-- 15922 AlignmentView.java
-rwxr-xr-x 3073 Annotation.java
-rwxr-xr-x 5416 BinaryNode.java
-rwxr-xr-x 3385 BinarySequence.java
-rw-r--r-- 7238 CigarArray.java
-rw-r--r-- 19802 CigarBase.java
-rw-r--r-- 1779 CigarCigar.java
-rw-r--r-- 1456 CigarSimple.java
-rw-r--r-- 24861 ColumnSelection.java
-rwxr-xr-x 4411 DBRefEntry.java
-rwxr-xr-x 3385 DBRefSource.java
-rw-r--r-- 1641 FeatureProperties.java
-rwxr-xr-x 1494 GraphLine.java
-rwxr-xr-x 6321 HiddenSequences.java
-rw-r--r-- 10510 Mapping.java
-rwxr-xr-x 2533 PDBEntry.java
-rwxr-xr-x 1429 Provenance.java
-rwxr-xr-x 1339 ProvenanceEntry.java
-rwxr-xr-x 3997 SearchResults.java
-rw-r--r-- 21288 SeqCigar.java
-rwxr-xr-x 25541 Sequence.java
-rwxr-xr-x 5922 SequenceFeature.java
-rwxr-xr-x 13155 SequenceGroup.java
-rwxr-xr-x 8192 SequenceI.java
-rwxr-xr-x 4141 SequenceNode.java
-rwxr-xr-x 1485 SequencePoint.java
-rwxr-xr-x 1909 UniprotEntry.java
-rwxr-xr-x 1107 UniprotFile.java
-rwxr-xr-x 1194 UniprotProteinName.java
-rwxr-xr-x 1333 UniprotSequence.java
drwxr-xr-x - xdb