build.xml

   1 <?xml version="1.0"?>
   2 <!--
   3  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   4  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   5  *
   6  * This file is part of Jalview.
   7  *
   8  * Jalview is free software: you can redistribute it and/or
   9  * modify it under the terms of the GNU General Public License
  10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  18  * The Jalview Authors are detailed in the 'AUTHORS' file.
  19 -->
  20 <project name="jalviewX" default="usage" basedir="."
  21  xmlns:if="ant:if"
  22     xmlns:unless="ant:unless">
  23   <taskdef classpath="${clover.jar}" resource="cloverlib.xml" if:set="clover.jar"/>
  24   <clover-env if:set="clover.jar"/>
  25
  26   <target name="help" depends="usage" />
  27   <target name="usage" depends="init">
  28     <echo message="~~~Jalview Ant build.xml Usage~~~~" />
  29     <echo message="Targets include:" />
  30     <echo message="usage - default target, displays this message" />
  31     <echo message="buildindices - generates JavaHelpSearch from the help files" />
  32     <echo message="build - compiles all necessary files for Application" />
  33     <echo message="makedist - compiles and places all necessary jar files into directory dist" />
  34     <echo message="makefulldist - signs all jar files and builds jnlp file for full distribution" />
  35     <echo message="              this needs a keystore and key."/>
  36     <echo message="              Add -Dtimestamp to timestamp signed jars"/>
  37     <echo message="              -Djalview.keyalg and -Djalview.keydig are SHA1/SHA1withRSA"/>
  38     <echo message="              See docs/building.html for more information." />
  39     <echo message="compileApplet - compiles all necessary files for Applet" />
  40     <echo message="makeApplet - compiles, then packages and obfuscates the Applet" />
  41     <echo message="testng - run jalview's tests via testNG. Default group is '${testng-groups}'" />
  42     <echo message="      you can specify particular test groups as a list via -Dtestng-groups=" />
  43     <echo message="See docs/building.html and the comments in build file for other targets." />
  44     <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
  45     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
  46     <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
  47   </target>
  48
  49
  50   <!-- utils is a class path to additional utilities needed for
  51     building docs, jars and webstart stuff -->
  52   <!--
  53         Userdefined build property defaults
  54
  55         wsdl.server list (plus namespace mapping info ???)  - also want
  56                 ... to make this a dynamically generatable property
  57         WebStart Location
  58         Build location - provide a temporary root for speed
  59         jarsigner keystore and info
  60         Jakarta and axis classpath ?
  61         Default argument for starting Jalview (if it exists).
  62
  63 -->
  64
  65   <target name="init">
  66     <path id="axis.classpath">
  67       <!-->
  68       <fileset dir="/usr/local/axis/lib">
  69         <include name="**/*.jar" />
  70       </fileset>
  71       <fileset dir="/usr/local/jakarta-tomcat-5/webapps/axis/WEB-INF/lib">
  72         <include name="**/*.jar"/>
  73         <include name="*.jar"/>
  74       </fileset> -->
  75       </path>
  76
  77     <!-- Jalview Version String displayed by application on startup and used to check for updates -->
  78     <property name="JALVIEW_VERSION" value="DEVELOPMENT" />
  79
  80     <property name="INSTALLATION" value="Source" />
  81
  82     <!-- 2.4 (VAMSAS)" -->
  83     <!-- Include debugging information in javac true or false -->
  84     <property name="javac.debug" value="true" />
  85
  86     <!-- JarSigner Key Store for Webstart Distribution -->
  87     <property name="jalview.keystore" value="./keys/.keystore" />
  88     <!-- Keystore Password -->
  89     <property name="jalview.keystore.pass" value="alignmentisfun" />
  90     <!-- Key Name -->
  91     <property name="jalview.key" value="jalview" />
  92     <!-- Key Password -->
  93     <property name="jalview.key.pass" value="alignmentisfun" />
  94     <!-- time stamp server URL -->
  95     <property name="jalview.tsaurl" value="" />
  96     <!-- locally valid proxy for signing with external time server -->
  97     <property name="proxyPort" value="80"/>
  98     <property name="proxyHost" value="sqid"/>
  99     <!-- key sign/digest algorithms -->
 100     <property name="jalview.keyalg" value="SHA1withRSA" description="key algorithm for signing"/>
 101     <property name="jalview.keydig" value="SHA1" description="algorithm for jar digest"/>
 102
 103     <!-- default TestNG groups to run -->
 104     <property name="testng-groups" value="Functional" />
 105     <!-- Java 9 JVM args -->
 106     <condition property="java9">
 107       <equals arg1="${ant.java.version}" arg2="9"/>
 108     </condition>
 109     <!-- Java 10 JVM args -->
 110     <condition property="java10">
 111       <equals arg1="${ant.java.version}" arg2="10"/>
 112     </condition>
 113     <!-- Java 11 JVM args -->
 114     <condition property="java11">
 115       <equals arg1="${ant.java.version}" arg2="11"/>
 116     </condition>
 117     <echo message="ant.java.version is ${ant.java.version}"/>
 118
 119     <!-- Don't change anything below here unless you know what you are doing! -->
 120     <!-- Url path for WebStart in JNLP file -->
 121     <property name="WebStartLocation" value="http://www.jalview.org/webstart" />
 122     <!-- Webstart Image - looked for in resources/images -->
 123     <property name="WebStartImage" value="JalviewLogo_big.png" />
 124     <!-- J2SE version needed for webstart launch -->
 125     <!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
 126     <property name="j2sev" value="1.7+" />
 127     <!-- Java Compilation settings - source and target javac version -->
 128     <property name="javac.source" value="11" if:set="java11" />
 129     <property name="javac.target" value="11" if:set="java11" />
 130     <property name="javac.source" value="1.8" unless:set="java11" />
 131     <property name="javac.target" value="1.8" unless:set="java11" />
 132     <echo message="javac.source is ${javac.source}"/>
 133     <echo message="javac.target is ${javac.target}"/>
 134
 135     <!-- Permissions for running Java applets and applications. -->
 136     <!-- Defaults are those suitable for deploying jalview webstart www.jalview.org -->
 137     <property name="application.codebase" value="*.jalview.org" />
 138     <!-- and allowing the applet to be deployed from any URL -->
 139     <!-- note - if you want to make sure LiveConnect works without any warnings, please rebuild and sign your applet jar with your own domain included in the codebase/allowable-codebase properties -->
 140     <property name="applet.codebase" value="*.jalview.org *.dundee.ac.uk *" />
 141     <property name="applet.caller-codebase" value="${applet.codebase}" />
 142
 143     <!-- build directory configuration -->
 144     <property name="libDir" value="lib" />
 145     <property name="j11libDir" value="j11lib" />
 146     <property name="resourceDir" value="resources" />
 147     <property name="helpDir" value="help" />
 148     <property name="docDir" value="doc" />
 149     <property name="sourceDir" value="src" />
 150     <property name="schemaDir" value="schemas" />
 151     <property name="outputDir" value="classes" unless:set="clover.jar"/>
 152     <property name="outputDir" value="cloverclasses" if:set="clover.jar"/>
 153     <property name="packageDir" value="dist" />
 154     <property name="outputJar" value="jalview.jar" />
 155     <!-- Jalview Applet JMol Jar Dependency -->
 156     <property name="jmolJar" value="JmolApplet-14.6.4_2016.10.26.jar" />
 157     <property name="varnaJar" value="VARNAv3-93.jar" />
 158     <property name="jsoup" value="jsoup-1.8.1.jar" />
 159     <property name="jsonSimple" value="json_simple-1.1.jar" />
 160     <property name="javaJson" value="java-json.jar" />
 161     <property name="jalviewLiteJar" value="jalviewApplet.jar" />
 162     <property name="reportDir" value="test-reports" />
 163     <property name="testDir" value="test" />
 164     <property name="testOutputDir" value="tests" />
 165     <!-- switch to indicate if we should obfuscate jalviewLite -->
 166     <!-- <property name="donotobfuscate" value="true"/> -->
 167     <!-- switch to exclude associations from generated jnlp files -->
 168     <!-- <property name="nojnlpfileassocs" value="true"/> -->
 169
 170     <!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
 171     <property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
 172     <property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
 173     <property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
 174     <property name="wsdl.MsaWS2" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS?wsdl" />
 175     <property name="WSInterf" value="MsaWS" />
 176     <property name="wsdl.Namespace" value="vamsas" />
 177     <property name="wsdl.ClientNS" value="ext.vamsas" />
 178     <!-- the class path for building the application -->
 179     <path id="build.classpath">
 180       <fileset dir="utils">
 181         <include name="*.jar" />
 182         <include name="**/*.jar" />
 183       </fileset>
 184       <fileset dir="${j11libDir}">
 185         <include name="*.jar" />
 186         <include name="**/*.jar" />
 187       </fileset>
 188       <fileset dir="${libDir}">
 189         <include name="*.jar" />
 190         <include name="**/*.jar" />
 191       </fileset>
 192       <fileset dir="${java.home}/lib">
 193         <include name="plugin.jar" />
 194       </fileset>
 195       <fileset dir="appletlib">
 196         <!-- the JmolApplet includes the JmolApplet console and the application javac seems to always try and build all packages
 197                                 -->
 198         <include name="${jmolJar}" />
 199         <include name="${varnaJar}" />
 200       </fileset>
 201       <pathelement location="${clover.jar}" if:set="clover.jar"/>
 202     </path>
 203     <path id="test.classpath">
 204       <pathelement path="${outputDir}" />
 205       <path refid="build.classpath" />
 206     </path>
 207     <property name="source.dist.name" value="${basedir}/jalview-src.tar.gz" />
 208     <!-- The Location of the java 1.1.8 jdk -->
 209     <property name="java118.home" value="${java.home}" />
 210     <!-- jre for 1.4 version -->
 211     <property name="applet.jre.tools" value="${java118.home}/lib/rt.jar" />
 212
 213     <!-- the classpath for building the 1.1 applet -->
 214     <path id="jalviewlite.deps">
 215       <fileset dir="${java118.home}">
 216         <include name="lib/rt.jar" />
 217       </fileset>
 218       <fileset dir="${java.home}/lib">
 219         <include name="plugin.jar" />
 220       </fileset>
 221       <pathelement location="appletlib/${jmolJar}" />
 222       <pathelement location="lib/${varnaJar}" />
 223       <pathelement location="appletlib/${jsoup}" />
 224       <pathelement location="appletlib/${jsonSimple}" />
 225       <pathelement location="appletlib/${javaJson}" />
 226
 227     </path>
 228     <!-- default location for outputting javadoc -->
 229     <property name="javadocDir" value="${packageDir}/javadoc" />
 230   </target>
 231
 232
 233   <taskdef classpath="utils/roxes-ant-tasks-1.2-2004-01-30.jar" resource="com/roxes/tools/ant/taskdefs.properties" />
 234   <target name="buildPropertiesFile" depends="init">
 235     <tstamp prefix="build">
 236       <format property="date" pattern="dd MMMM yyyy" />
 237     </tstamp>
 238     <exec executable="/usr/bin/git" outputproperty="git.commit" failifexecutionfails="false">
 239       <arg value="rev-parse" />
 240       <arg value="--short" />
 241       <arg value="HEAD" />
 242     </exec>
 243     <exec executable="/usr/bin/git" outputproperty="git.branch" failifexecutionfails="false">
 244       <arg value="rev-parse" />
 245       <arg value="--abbrev-ref" />
 246       <arg value="HEAD" />
 247     </exec>
 248     <properties file="${outputDir}/.build_properties">
 249       <header>
 250           ---Jalview Build Details---
 251         </header>
 252       <property name="VERSION" value="${JALVIEW_VERSION}" />
 253       <property name="INSTALLATION" value="${INSTALLATION} git-commit:${git.commit} [${git.branch}]" />
 254       <property name="BUILD_DATE" value="${build.date}" />
 255     </properties>
 256   </target>
 257
 258
 259   <target name="clean" depends="init">
 260     <!-- not efficient yet. -->
 261     <delete dir="${outputDir}" includes="*,**/*" />
 262   </target>
 263
 264   <target name="distclean" depends="init, clean">
 265
 266     <echo message="REMOVING ALL BACKUP/AUTOSAVES!" />
 267     <delete>
 268       <fileset dir=".">
 269         <include name="${outputJar}" />
 270         <include name="#*#" />
 271         <include name="#*.*#" />
 272         <include name="**/#*#" />
 273         <include name="**/#*.*#" />
 274         <include name="*~" />
 275         <include name="*.*~" />
 276         <include name="**/*~" />
 277         <include name="**/*.*~" />
 278       </fileset>
 279     </delete>
 280   </target>
 281
 282   <target name="prepare" depends="init">
 283     <mkdir dir="${outputDir}" />
 284     <copy todir="${outputDir}">
 285       <fileset dir=".">
 286         <include name="${docDir}/**/*.*" />
 287         <include name="${helpDir}/**/*.*" />
 288         <include name="${libDir}/*.jar" />
 289       </fileset>
 290       <fileset dir="${resourceDir}">
 291         <include name="**/*.*" />
 292       </fileset>
 293     </copy>
 294   </target>
 295
 296   <target name="build" depends="prepare">
 297     <!-- not efficient yet. -->
 298     <!-- Echo the build.classpath
 299     <pathconvert property="echoClasspath" refid="build.classpath" />
 300     <echo message="build.classpath is '${echoClasspath}'" />
 301     -->
 302     <echo message="javac.target is '${javac.target}'" />
 303     <javac includeantruntime="false" source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="build.classpath">
 304       <exclude name="jalview/*applet*" />
 305       <exclude name="jalview/appletgui/**" />
 306       <exclude name="com/stevesoft/**" />
 307     </javac>
 308   </target>
 309
 310
 311   <target name="testclean" depends="init">
 312     <delete dir="${testOutputDir}" includes="*,**/*" />
 313   </target>
 314
 315   <target name="prepareTests" depends="init,testclean">
 316     <mkdir dir="${testOutputDir}" />
 317   </target>
 318
 319   <target name="buildTests" depends="build,buildindices,prepareTests">
 320     <javac source="${javac.source}" target="${javac.target}" srcdir="${testDir}" destdir="${testOutputDir}" debug="${javac.debug}" classpathref="test.classpath" includeantruntime="false">
 321     </javac>
 322   </target>
 323
 324   <taskdef resource="testngtasks" classpath="utils/testnglibs/testng.jar" />
 325
 326   <target name="testng" depends="buildTests">
 327     <testng outputDir="${reportDir}" haltOnFailure="false" groups="${testng-groups}" mode="testng"
 328       verbose="2">
 329       <classpath>
 330         <pathelement location="${testOutputDir}" />
 331         <pathelement location="${clover.jar}" if:set="clover.jar"/>
 332         <path refid="test.classpath" />
 333       </classpath>
 334       <jvmarg value="--module-path=${j11libDir}:${java.home}/jmods" if:set="java11"/>
 335       <jvmarg value="--add-modules=java.se.ee" if:set="java9"/>
 336       <jvmarg value="--illegal-access=warn" if:set="java9"/>
 337       <classfileset dir="${testOutputDir}" includes="**/*.class" />
 338     </testng>
 339   </target>
 340
 341   <target name="buildindices" depends="init, prepare" unless="help.uptodate">
 342     <replace value="${JALVIEW_VERSION}">
 343       <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
 344       <fileset dir="${outputDir}/${helpDir}">
 345         <include name="help.jhm" />
 346       </fileset>
 347     </replace>
 348
 349     <java classname="com.sun.java.help.search.Indexer" classpathref="build.classpath" fork="true" dir="${outputDir}/${helpDir}">
 350       <arg line="html" />
 351     </java>
 352   </target>
 353
 354   <target name="preparejnlp" depends="makedist">
 355     <copy todir="${packageDir}">
 356       <fileset dir="${resourceDir}/images">
 357         <include name="${WebStartImage}" />
 358       </fileset>
 359     </copy>
 360
 361     <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties" />
 362
 363     <!-- create a dummy jar which will eventually contain the jnlp template -->
 364     <jar destfile="${packageDir}/jalview_jnlp_vm.jar" index="true">
 365       <fileset dir="${packageDir}">
 366         <include name="jalview.jar" />
 367       </fileset>
 368     </jar>
 369
 370     <mkdir dir="${packageDir}/JNLP-INF" />
 371     <antcall target="writejnlpf">
 372       <param name="jnlpFile" value="${packageDir}/JNLP-INF/APPLICATION-TEMPLATE.JNLP" />
 373       <param name="inih" value="*" />
 374       <param name="maxh" value="*" />
 375     </antcall>
 376
 377     <jar destfile="${packageDir}/jalview_jnlp_vm.jar" index="true">
 378       <fileset dir="${packageDir}">
 379         <include name="JNLP-INF/APPLICATION-TEMPLATE.JNLP" />
 380       </fileset>
 381     </jar>
 382
 383     <antcall target="writejnlpf">
 384       <param name="jnlpFile" value="${packageDir}/jalview_256M.jnlp" />
 385       <param name="inih" value="10M" />
 386       <param name="maxh" value="256M" />
 387     </antcall>
 388     <antcall target="writejnlpf">
 389       <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
 390       <param name="inih" value="800M" />
 391       <param name="maxh" value="1024M" />
 392     </antcall>
 393
 394     <antcall target="writejnlpf">
 395       <param name="jnlpFile" value="${packageDir}/jalview_1G.jnlp" />
 396       <param name="inih" value="128M" />
 397       <param name="maxh" value="512M" />
 398     </antcall>
 399
 400     <antcall target="writejnlpf">
 401       <param name="jnlpFile" value="${packageDir}/jalview_2G.jnlp" />
 402       <param name="inih" value="800M" />
 403       <param name="maxh" value="1024M" />
 404     </antcall>
 405
 406     <!-- finally, need to postprocess to add in associations at end of 'information' element
 407
 408                         <xslt in="${packageDir}/jalview_noa_1G.jnlp" out="${packageDir}/jalview_1G.jnlp">
 409
 410                 </xslt>
 411
 412
 413                         -->
 414     <!--
 415                                 <association mime-type="application-x/ext-file" extensions="fa"/>
 416         <association mime-type="application-x/ext-file" extensions="fasta"/>
 417         <association mime-type="application-x/ext-file" extensions="mfa"/>
 418         <association mime-type="application-x/ext-file" extensions="fastq"/>
 419         <association mime-type="application-x/ext-file" extensions="blc"/>
 420         <association mime-type="application-x/ext-file" extensions="msf"/>
 421         <association mime-type="application-x/ext-file" extensions="pfam"/>
 422         <association mime-type="application-x/ext-file" extensions="aln"/>
 423         <association mime-type="application-x/ext-file" extensions="pir"/>
 424         <association mime-type="application-x/ext-file" extensions="amsa"/>
 425         <association mime-type="application-x/ext-file" extensions="stk"/>
 426         <association mime-type="application-x/ext-file" extensions="jar"/>-->
 427   </target>
 428
 429   <target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp" unless="nosign">
 430     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}"
 431       tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
 432       <fileset dir="${packageDir}">
 433         <include name="*.jar" />
 434       </fileset>
 435     </signjar>
 436   </target>
 437   <target name="-jarsignnotsa" depends="makedist,preparejnlp" if:blank="timestamp" unless="nosign">
 438     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}">
 439       <fileset dir="${packageDir}">
 440         <include name="*.jar" />
 441       </fileset>
 442     </signjar>
 443   </target>
 444
 445   <target name="makefulldist" depends="makedist,preparejnlp,-jarsignwithtsa,-jarsignnotsa">
 446     <!-- and sign the jars -->
 447     <!-- the default keystore details might need to be edited here -->
 448   </target>
 449
 450   <target name="runenv" depends="init">
 451     <path id="run.classpath">
 452       <pathelement location="${outputDir}" />
 453       <fileset dir="${outputDir}">
 454         <include name="${libDir}/*.jar" />
 455       </fileset>
 456     </path>
 457     <pathconvert targetos="unix" refid="run.classpath" property="run.classpath" />
 458
 459     <echo>java -classpath ${run.classpath} jalview.bin.Jalview
 460       </echo>
 461   </target>
 462
 463   <target name="-generatejnlpf">
 464     <presetdef name="jnlpf">
 465       <jnlp codebase="${WebStartLocation}">
 466         <information>
 467           <title>Jalview</title>
 468           <vendor>The Barton Group</vendor>
 469           <homepage href="http://www.jalview.org" />
 470           <description>Jalview Multiple Alignment Editor</description>
 471           <description kind="short">Jalview</description>
 472           <icon href="${WebStartImage}" />
 473           <offline_allowed />
 474         </information>
 475         <resources>
 476           <j2se version="1.8+" />
 477           <jar main="true" href="jalview.jar"/>
 478           <fileset dir="${packageDir}">
 479             <exclude name="jalview.jar" />
 480             <include name="*.jar" />
 481             <include name="*_*.jar" />
 482             <exclude name="*quaqua*.jar" />
 483           </fileset>
 484           <property name="jalview.version" value="${JALVIEW_VERSION}" />
 485         </resources>
 486         <resources os="Mac OS X">
 487           <fileset dir="${packageDir}">
 488                  <include name="quaqua-filechooser-only-8.0.jar"/>
 489             <include name="*quaqua64*.jnilib.jar" />
 490           </fileset>
 491         </resources>
 492
 493         <application_desc main_class="jalview.bin.Jalview">
 494         </application_desc>
 495         <security>
 496           <all_permissions />
 497         </security>
 498       </jnlp>
 499     </presetdef>
 500
 501     <jnlpf toFile="${jnlpFile}" />
 502     <!-- add the add-modules j2se attribute for java 9 -->
 503     <replace file="${jnlpFile}" value="j2se version=&quot;1.8+&quot; initial-heap-size=&quot;${inih}&quot; max-heap-size=&quot;${maxh}&quot; java-vm-args=&quot;--add-modules=java.se.ee --illegal-access=warn&quot;">
 504           <replacetoken>j2se version="1.8+"</replacetoken>
 505     </replace>
 506   </target>
 507
 508   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
 509     <echo message="Not adding JNLP File Associations" />
 510   </target>
 511
 512   <target name="-dojnlpfileassoc" depends="-generatejnlpf" unless="nojnlpfileassocs">
 513     <replace file="${jnlpFile}">
 514       <replacetoken>
 515         <![CDATA[</information>]]></replacetoken>
 516       <replacevalue>
 517         <![CDATA[
 518           <association mime-type="application-x/ext-file" extensions="fa" />
 519         <association mime-type="application-x/ext-file" extensions="fasta" />
 520         <association mime-type="application-x/ext-file" extensions="mfa" />
 521         <association mime-type="application-x/ext-file" extensions="fastq" />
 522         <association mime-type="application-x/ext-file" extensions="blc" />
 523         <association mime-type="application-x/ext-file" extensions="msf" />
 524         <association mime-type="application-x/ext-file" extensions="pfam" />
 525         <association mime-type="application-x/ext-file" extensions="aln"/>
 526         <association mime-type="application-x/ext-file" extensions="pir"/>
 527         <association mime-type="application-x/ext-file" extensions="amsa"/>
 528         <association mime-type="application-x/ext-file" extensions="stk"/>
 529         <association mime-type="application-x/ext-file" extensions="jvp"/>
 530       </information>]]></replacevalue>
 531   </replace>
 532   <echo message="Added file associations to JNLP file" />
 533 </target>
 534 <target name="writejnlpf" depends="-dojnlpfileassoc,-dofakejnlpfileassoc">
 535 </target>
 536
 537 <target name="buildextclients" depends="init">
 538   <input message="Building external client source from WSDLs - Do you really want to do this ? (Yy/Nn)" validargs="Y,y,n,N" defaultvalue="N" addproperty="doextbuild.response" />
 539   <condition property="dontextbuild">
 540     <equals arg1="n" arg2="${doextbuild.response}" />
 541   </condition>
 542   <condition property="dontextbuild">
 543     <equals arg1="N" arg2="${doextbuild.response}" />
 544   </condition>
 545   <fail if="dontextbuild">
 546         Build External Client Code process aborted by user. Jalview source is unchanged.
 547       </fail>
 548   <!-- Currently, this doesn't happen automatically.
 549      1. Run WSDL2Java as below, which generates an ext.vamsas +
 550      vamsas.<datapackages> fileset.
 551      2. refactor ext.vamsas.SpecificserviceWS* to
 552      ext.vamsas.ServiceclassWS* that implements the ServiceclassWSI interface.
 553      3. Update the jalview.ws.*WServices classes to reflect the
 554      interface type, and all locations of this wsdl type that Jalview
 555      might be using.
 556
 557 -->
 558   <path id="axisbuild">
 559     <path refid="build.classpath" />
 560   </path>
 561   <taskdef resource="axis-tasks.properties" classpathref="axisbuild" />
 562   <move todir="./bak">
 563     <fileset dir="${sourceDir}" id="client">
 564       <include name="${wsdl.ClientNS}/*.*" />
 565     </fileset>
 566   </move>
 567
 568   <axis-wsdl2java output="${sourceDir}" verbose="true" url="${wsdl.MsaWS2}" serverside="false" deployscope="Request" debug="false" helpergen="true" all="true">
 569     <mappingSet>
 570       <mapping namespace="${wsdl.Namespace}" package="${wsdl.ClientNS}" />
 571       <mapping namespace="http://dataTypes.vamsas" package="${wsdl.ClientNS}" />
 572     </mappingSet>
 573   </axis-wsdl2java>
 574 </target>
 575
 576 <target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
 577   <fail if="clover.jar">
 578     Ignoring request to build jalview distribution with clover-instrumented classes
 579   </fail>
 580   <!-- make the package jar if not already existing -->
 581   <mkdir dir="${packageDir}" />
 582   <!-- clean dir if it already existed -->
 583   <delete>
 584     <fileset dir="${packageDir}">
 585       <include name="*.jar" />
 586     </fileset>
 587   </delete>
 588   <jar destfile="${packageDir}/${outputJar}" index="true">
 589     <manifest>
 590       <attribute name="Main-Class" value="jalview.bin.Jalview" />
 591       <attribute name="Permissions" value="all-permissions" />
 592       <attribute name="Application-Name" value="Jalview Desktop" />
 593       <attribute name="Codebase" value="${application.codebase}" />
 594     </manifest>
 595     <fileset dir="${outputDir}/">
 596       <exclude name="cache*/**" />
 597       <exclude name="*.jar" />
 598       <exclude name="*.jar.*" />
 599       <exclude name="**/*.jar" />
 600       <exclude name="**/*.jar.*" />
 601     </fileset>
 602   </jar>
 603
 604   <copy toDir="${packageDir}" flatten="true">
 605     <fileset dir="${outputDir}">
 606       <include name="*.jar" />
 607       <include name="**/*.jar" />
 608     </fileset>
 609   </copy>
 610 </target>
 611
 612
 613 <!-- jalopy code reformatter -->
 614 <target name="sourcescrub" depends="init,build">
 615   <jalopy destdir="jsrc" classpathref="run.classpath" convention="jalview-jalopy.xml">
 616     <fileset dir="${sourceDir}">
 617       <include name="*.java" />
 618       <include name="**/*.java" />
 619       <include name="**/**/*.java" />
 620     </fileset>
 621   </jalopy>
 622 </target>
 623
 624
 625
 626 <!-- Compile, package and obfuscate Jalview Applet -->
 627 <target name="makeApplet" depends="obfuscate" description="assemble the final jalviewLite applet jar with or without obfuscation" />
 628
 629 <target name="compileApplet" depends="init,clean">
 630   <mkdir dir="${outputDir}" />
 631   <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**,jalview/ext/ensembl/**,jalview/ext/so/**" />
 632 </target>
 633
 634 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
 635   <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
 636   <copy todir="${outputDir}/lang">
 637     <fileset dir="${resourceDir}/lang">
 638       <include name="**.*" />
 639     </fileset>
 640   </copy>
 641   <jar destfile="in.jar" index="true">
 642     <manifest>
 643       <attribute name="Main-Class" value="jalview.bin.JalviewLite" />
 644       <attribute name="Application-Name" value="JalviewLite" />
 645       <attribute name="Codebase" value="${applet.codebase}" />
 646     </manifest>
 647     <fileset dir="${outputDir}">
 648       <include name="com/**" />
 649       <include name="MCview/**" />
 650       <include name="jalview/**" />
 651       <include name=".build_properties" />
 652       <include name="images/link.gif" />
 653       <include name="lang/**" />
 654     </fileset>
 655   </jar>
 656 </target>
 657 <target name="obfuscate" depends="-obfuscatefake,-obfuscatereally">
 658 </target>
 659 <target name="-obfuscatefake" depends="packageApplet" if="donotobfuscate">
 660   <copy file="in.jar" tofile="${jalviewLiteJar}" overwrite="true" />
 661   <delete file="in.jar" />
 662 </target>
 663 <target name="-obfuscatereally" unless="donotobfuscate">
 664
 665   <path id="obfuscateDeps.path">
 666     <pathelement location="${applet.jre.tools}" />
 667     <pathelement location="appletlib/${jmolJar}" />
 668     <pathelement location="lib/${varnaJar}" />
 669     <pathelement location="appletlib/${jsoup}" />
 670     <pathelement location="appletlib/${jsonSimple}" />
 671     <pathelement location="appletlib/${javaJson}" />
 672     <fileset dir="${java.home}/lib">
 673       <include name="plugin.jar" />
 674     </fileset>
 675   </path>
 676   <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard_5.3.3.jar" />
 677
 678   <proguard verbose="true" >
 679     <injar file="in.jar" />
 680     <outjar file="${jalviewLiteJar}" />
 681     <libraryjar refid="obfuscateDeps.path" />
 682     <dontwarn />
 683     <keep access="public" type="class" name="jalview.bin.JalviewLite">
 684       <field access="public" />
 685       <method access="public" />
 686       <constructor access="public" />
 687     </keep>
 688     <keep access="public" type="class" name="jalview.appletgui.AlignFrame">
 689       <field access="public" />
 690       <method access="public" />
 691       <constructor access="public" />
 692     </keep>
 693
 694     <keep name="jalview.json.binding**">
 695       <constructor/>
 696       <method name="*"/>
 697     </keep>
 698
 699     <keep access="public" type="class" name="MCview.PDBfile">
 700       <field access="public" />
 701       <method access="public" />
 702       <constructor access="public" />
 703     </keep>
 704
 705     <keep access="public" type="class" name="jalview.ws.jws1.Annotate3D">
 706       <field access="public" />
 707       <method access="public" />
 708       <constructor access="public" />
 709     </keep>
 710
 711     <keep access="public" type="class" name="jalview.ext.jmol.JmolParser">
 712       <field access="public" />
 713       <method access="public" />
 714       <constructor access="public" />
 715     </keep>
 716
 717
 718     <!--      -libraryjars "${obfuscateDeps}"
 719       -injars      in.jar
 720       -outjars     jalviewApplet.jar
 721       -keep public class jalview.bin.JalviewLite
 722        { public * ; } -->
 723   </proguard>
 724   <delete file="in.jar" />
 725 </target>
 726
 727 <target name="sourcedist" description="create jalview source distribution" depends="init">
 728   <delete file="${source.dist.name}" />
 729   <!-- temporary copy of source to update timestamps -->
 730   <copy todir="_sourcedist">
 731     <fileset dir=".">
 732       <exclude name=".*" />
 733       <exclude name="**/.*" />
 734       <exclude name="*.class" />
 735       <exclude name="**/*.class" />
 736       <include name="LICENSE" />
 737       <include name="README" />
 738       <include name="build.xml" />
 739       <include name="jalview-jalopy.xml" />
 740       <include name="JalviewApplet.jpx" />
 741       <include name="JalviewX.jpx" />
 742       <include name="nbbuild.xml" />
 743       <include name="nbproject/genfiles.properties" />
 744       <include name="nbproject/project.properties" />
 745       <include name="nbproject/project.xml" />
 746       <include name="${sourceDir}/*.java" />
 747       <include name="${sourceDir}/**/*.java" />
 748       <include name="${sourceDir}/**/*.cdr" />
 749       <include name="${libDir}/**/*" />
 750       <include name="${resourceDir}/**/*" />
 751       <include name="${helpDir}/**/*" />
 752       <include name="appletlib/${jmolJar}" />
 753       <include name="appletlib/${jsonSimple}" />
 754       <include name="appletlib/${javaJson}" />
 755       <exclude name="**/*locales" />
 756       <exclude name="*locales/**" />
 757       <exclude name="utils/InstallAnywhere/**Build.iap_xml" />
 758       <exclude name="utils/InstallAnywhere/**Build*/**" />
 759       <exclude name="utils/InstallAnywhere/**Build*/**" />
 760       <exclude name="utils/InstallAnywhere/.build*.*/**" />
 761       <exclude name="utils/InstallAnywhere/**locale*" />
 762       <exclude name="utils/InstallAnywhere/**locale*/**" />
 763       <exclude name="utils/InstallAnywhere/**locale*/**" />
 764       <include name="${schemaDir}/**/*" />
 765       <include name="utils/**/*" />
 766       <include name="${docDir}/**/*" />
 767       <include name="examples/**/*" />
 768     </fileset>
 769   </copy>
 770
 771   <tstamp prefix="build">
 772     <format property="year" pattern="yyyy" />
 773   </tstamp>
 774   <!-- each replacetoken CDATA body must be on one line -
 775        otherwise the pattern doesn't match -->
 776   <replace value="${JALVIEW_VERSION}">
 777     <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
 778     <fileset dir="_sourcedist">
 779       <include name="**/*" />
 780     </fileset>
 781   </replace>
 782   <replace dir="_sourcedist" value="${build.year}">
 783     <replacetoken><![CDATA[$$Year-Rel$$]]></replacetoken>
 784     <fileset dir="_sourcedist">
 785       <include name="**/*" />
 786     </fileset>
 787   </replace>
 788
 789   <tar destfile="${source.dist.name}" compression="gzip">
 790     <tarfileset dir="_sourcedist/" prefix="jalview" preserveLeadingSlashes="true">
 791     </tarfileset>
 792   </tar>
 793
 794   <delete dir="_sourcedist" />
 795 </target>
 796 <target name="prepubapplet_1" depends="makeApplet">
 797   <copy todir="${packageDir}/examples">
 798     <fileset dir="examples">
 799       <include name="**/*" />
 800       <include name="javascript/*" />
 801       <include name="jmol/*" />
 802     </fileset>
 803     <fileset dir=".">
 804       <include name="${jalviewLiteJar}" />
 805     </fileset>
 806     <fileset dir="appletlib">
 807       <include name="**/*" />
 808     </fileset>
 809   </copy>
 810   <jar update="true" index="true" jarfile="${packageDir}/examples/${jalviewLiteJar}" />
 811   <jar update="true" index="true" jarfile="${packageDir}/examples/${javaJson}" />
 812   <jar update="true" index="true" jarfile="${packageDir}/examples/${jsonSimple}" />
 813   <jar update="true" index="true" jarfile="${packageDir}/examples/${jmolJar}">
 814     <manifest>
 815       <attribute name="Application-Name" value="Jmol (bundled with JalviewLite)" />
 816       <!--          <attribute name="Permissions" value="sandbox" /> -->
 817       <!--<attribute name="Trusted-Lib" value="true" /> -->
 818       <attribute name="Codebase" value="${applet.codebase}" />
 819       <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
 820     </manifest>
 821   </jar>
 822
 823   <presetdef name="ap_applet.jar">
 824     <!-- build a signed applet with 'all-permissions' -
 825                           Needs 'param name="permissions' value="all-permissions"' in applet tag
 826                           JalviewLite+JmolApplet linked sequence/structure fails
 827                           Mixed code warnings are raised
 828                           -->
 829     <jar update="true" index="true">
 830       <manifest>
 831         <attribute name="Application-Name" value="JalviewLite" />
 832         <attribute name="Permissions" value="all-permissions" />
 833         <attribute name="Codebase" value="${applet.codebase}" />
 834         <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
 835         <attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}" />
 836       </manifest>
 837     </jar>
 838   </presetdef>
 839   <presetdef name="applet.jar">
 840     <!-- build signed applet with sandbox permissions -
 841                           Needs 'param name="permissions' value="sandbox"' in applet tag
 842                          Preserves Pre-Java 1.7_u45 behavior once 'permissions' parameter added to applet tag
 843                         -->
 844
 845     <jar update="true" index="true">
 846       <manifest>
 847         <attribute name="Application-Name" value="JalviewLite" />
 848         <attribute name="Permissions" value="sandbox" />
 849         <attribute name="Codebase" value="${applet.codebase}" />
 850         <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
 851         <attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}" />
 852       </manifest>
 853     </jar>
 854   </presetdef>
 855   <presetdef name="tl_applet.jar">
 856     <!-- build signed applet with trusted library/trusted permissions -
 857                                 Needs 'param name="permissions' value="all-permissions"' in applet tag
 858                                j1.7_45:
 859                                No mixed code warnings raised
 860                                Jmol/JalviewLite sequence/structure example doesn't link structures
 861                                Raises dialog asking user to allow page to control applet via LiveConnect javascript
 862
 863                               -->
 864
 865     <jar update="true" index="true">
 866       <manifest>
 867         <attribute name="Application-Name" value="JalviewLite" />
 868         <attribute name="Permissions" value="all-permissions" />
 869         <attribute name="Codebase" value="${applet.codebase}" />
 870         <attribute name="Trusted-Only" value="true" />
 871         <attribute name="Trusted-Library" value="true" />
 872       </manifest>
 873     </jar>
 874   </presetdef>
 875   <presetdef name="to_applet.jar">
 876     <!-- not fully test variant (yet) -->
 877     <jar update="true" index="true">
 878       <manifest>
 879         <attribute name="Application-Name" value="JalviewLite" />
 880         <attribute name="Permissions" value="all-permissions" />
 881         <attribute name="Codebase" value="${applet.codebase}" />
 882         <attribute name="Trusted-Only" value="true" />
 883       </manifest>
 884     </jar>
 885   </presetdef>
 886   <!-- create differently privileged artefacts -->
 887   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/u_${jalviewLiteJar}" />
 888   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
 889   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/u_${javaJson}" overwrite="true" />
 890   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/u_${jsonSimple}" overwrite="true" />
 891   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/ap_${jalviewLiteJar}" />
 892   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/ap_${jmolJar}" />
 893   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/ap_${javaJson}" />
 894   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/ap_${jsonSimple}" />
 895   <ap_applet.jar jarfile="${packageDir}/examples/ap_${jalviewLiteJar}" />
 896   <ap_applet.jar jarfile="${packageDir}/examples/ap_${jmolJar}" />
 897   <ap_applet.jar jarfile="${packageDir}/examples/ap_${javaJson}" />
 898   <ap_applet.jar jarfile="${packageDir}/examples/ap_${jsonSimple}" />
 899   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/tl_${jalviewLiteJar}" />
 900   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/tl_${jmolJar}" />
 901   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/tl_${javaJson}" />
 902   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/tl_${jsonSimple}" />
 903   <tl_applet.jar jarfile="${packageDir}/examples/tl_${jalviewLiteJar}" />
 904   <tl_applet.jar jarfile="${packageDir}/examples/tl_${jmolJar}" />
 905   <tl_applet.jar jarfile="${packageDir}/examples/tl_${javaJson}" />
 906   <tl_applet.jar jarfile="${packageDir}/examples/tl_${jsonSimple}" />
 907   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/to_${jalviewLiteJar}" />
 908   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/to_${jmolJar}" />
 909   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/to_${javaJson}" />
 910   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/to_${jsonSimple}" />
 911   <to_applet.jar jarfile="${packageDir}/examples/to_${jalviewLiteJar}" />
 912   <to_applet.jar jarfile="${packageDir}/examples/to_${jmolJar}" />
 913   <to_applet.jar jarfile="${packageDir}/examples/to_${javaJson}" />
 914   <to_applet.jar jarfile="${packageDir}/examples/to_${jsonSimple}" />
 915   <!-- finally, create manifest for original jars -->
 916   <applet.jar jarfile="${packageDir}/examples/${jalviewLiteJar}" />
 917   <applet.jar jarfile="${packageDir}/examples/${jmolJar}" />
 918   <applet.jar jarfile="${packageDir}/examples/${javaJson}" />
 919   <applet.jar jarfile="${packageDir}/examples/${jsonSimple}" />
 920
 921   <!-- todo - write examples/downloads for alternate versions of the applet
 922     probably don't need to do this now since we don't have alternate versions anymore !-->
 923 </target>
 924 <target name="-signapplet" depends="prepubapplet_1">
 925   <fileset id="signappletjarset" dir="${packageDir}/examples">
 926     <exclude name="u_*.jar" />
 927     <include name="${jalviewLiteJar}" />
 928     <include name="${jmolJar}" />
 929     <include name="${javaJson}" />
 930     <include name="${jsonSimple}" />
 931     <include name="to_${jalviewLiteJar}" />
 932     <include name="to_${jmolJar}" />
 933     <include name="to_${javaJson}" />
 934     <include name="to_${jsonSimple}" />
 935     <include name="tl_${jalviewLiteJar}" />
 936     <include name="tl_${jmolJar}" />
 937     <include name="tl_${javaJson}" />
 938     <include name="tl_${jsonSimple}" />
 939     <include name="ap_${jalviewLiteJar}" />
 940     <include name="ap_${jmolJar}" />
 941     <include name="ap_${javaJson}" />
 942     <include name="ap_${jsonSimple}" />
 943   </fileset>
 944 </target>
 945 <target name="-signappletnotsa" if:blank="timestamp" depends="-signapplet" unless="nosign">
 946   <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
 947     <fileset refid="signappletjarset" />
 948   </signjar>
 949 </target>
 950
 951 <target name="-signapplettsa" if="timestamp" depends="-signapplet" unless="nosign">
 952   <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
 953     <fileset refid="signappletjarset" />
 954   </signjar>
 955 </target>
 956
 957 <target name="signApplet" description="internal target to sign applet" depends="-signappletnotsa,-signapplettsa" />
 958
 959 <target name="pubapplet" description="installs the jalviewLite applet and dependent jars into an applet examples directory built under ${outputDir}" depends="makeApplet, signApplet">
 960
 961   <!-- bizarre bug causes JmolApplet to always get signed, even if excluded from above. so copy explicitly -->
 962   <copy file="appletlib/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
 963   <copy file="appletlib/${jsonSimple}" tofile="${packageDir}/examples/u_${jsonSimple}" overwrite="true" />
 964   <copy file="appletlib/${javaJson}" tofile="${packageDir}/examples/u_${javaJson}" overwrite="true" />
 965   <!-- finally, replace any launchApp servlet tags with a version specification -->
 966   <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}&quot;">
 967     <replacetoken>
 968       <![CDATA[http://www.jalview.org/services/launchApp"]]>
 969     </replacetoken>
 970     <fileset dir="${packageDir}/examples">
 971       <include name="**/*.html" />
 972     </fileset>
 973   </replace>
 974   <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}'">
 975     <replacetoken>
 976       <![CDATA[http://www.jalview.org/services/launchApp']]>
 977     </replacetoken>
 978     <fileset dir="${packageDir}/examples">
 979       <include name="**/*.html" />
 980     </fileset>
 981   </replace>
 982
 983 </target>
 984 <target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
 985   <javadoc destdir="${javadocDir}">
 986     <packageset dir="${sourceDir}" includes="jalview/*,MCView/*">
 987     </packageset>
 988   </javadoc>
 989 </target>
 990 <target name="linkcheck" depends="init,prepare">
 991   <javac srcdir="utils" destdir="utils" includes="HelpLinksChecker.java"/>
 992   <java fork="true" dir="${helpDir}" classpath="utils" classname="HelpLinksChecker" failonerror="true">
 993     <arg file="${helpDir}"/>
 994     <arg value="-nointernet"/>
 995   </java>
 996 </target>
 997 </project>