build.xml

   1 <?xml version="1.0"?>
   2 <!--
   3  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   4  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   5  *
   6  * This file is part of Jalview.
   7  *
   8  * Jalview is free software: you can redistribute it and/or
   9  * modify it under the terms of the GNU General Public License
  10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  18  * The Jalview Authors are detailed in the 'AUTHORS' file.
  19 -->
  20 <project name="jalviewX" default="usage" basedir="."
  21  xmlns:if="ant:if"
  22     xmlns:unless="ant:unless">
  23   <target name="help" depends="usage" />
  24   <target name="usage" depends="init">
  25     <echo message="~~~Jalview Ant build.xml Usage~~~~" />
  26     <echo message="Targets include:" />
  27     <echo message="usage - default target, displays this message" />
  28     <echo message="buildindices - generates JavaHelpSearch from the help files" />
  29     <echo message="build - compiles all necessary files for Application" />
  30     <echo message="makedist - compiles and places all necessary jar files into directory dist" />
  31     <echo message="makefulldist - signs all jar files and builds jnlp file for full distribution" />
  32     <echo message="              this needs a keystore and key."/>
  33     <echo message="              Add -Dtimestamp to timestamp signed jars"/>
  34     <echo message="              -Djalview.keyalg and -Djalview.keydig are SHA1/SHA1withRSA"/>
  35     <echo message="              See docs/building.html for more information." />
  36     <echo message="compileApplet - compiles all necessary files for Applet" />
  37     <echo message="makeApplet - compiles, then packages and obfuscates the Applet" />
  38     <echo message="testng - run jalview's tests via testNG. Default group is '${testng-groups}'" />
  39     <echo message="      you can specify particular test groups as a list via -Dtestng-groups=" />
  40     <echo message="See docs/building.html and the comments in build file for other targets." />
  41     <echo message="note: compile and makeApplet require the property java118.home to be set to point to a java 1.1.8 jdk." />
  42     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
  43   </target>
  44
  45
  46   <!-- utils is a class path to additional utilities needed for
  47     building docs, jars and webstart stuff -->
  48   <!--
  49         Userdefined build property defaults
  50
  51         wsdl.server list (plus namespace mapping info ???)  - also want
  52                 ... to make this a dynamically generatable property
  53         WebStart Location
  54         Build location - provide a temporary root for speed
  55         jarsigner keystore and info
  56         Jakarta and axis classpath ?
  57         Default argument for starting Jalview (if it exists).
  58
  59 -->
  60
  61   <target name="init">
  62     <path id="axis.classpath">
  63       <!-->
  64       <fileset dir="/usr/local/axis/lib">
  65         <include name="**/*.jar" />
  66       </fileset>
  67       <fileset dir="/usr/local/jakarta-tomcat-5/webapps/axis/WEB-INF/lib">
  68         <include name="**/*.jar"/>
  69         <include name="*.jar"/>
  70       </fileset> -->
  71       </path>
  72
  73     <!-- Jalview Version String displayed by application on startup and used to check for updates -->
  74     <property name="JALVIEW_VERSION" value="DEVELOPMENT" />
  75
  76     <property name="INSTALLATION" value="Source" />
  77
  78     <!-- 2.4 (VAMSAS)" -->
  79     <!-- Include debugging information in javac true or false -->
  80     <property name="javac.debug" value="true" />
  81
  82     <!-- JarSigner Key Store for Webstart Distribution -->
  83     <property name="jalview.keystore" value="./keys/.keystore" />
  84     <!-- Keystore Password -->
  85     <property name="jalview.keystore.pass" value="alignmentisfun" />
  86     <!-- Key Name -->
  87     <property name="jalview.key" value="jalview" />
  88     <!-- Key Password -->
  89     <property name="jalview.key.pass" value="alignmentisfun" />
  90     <!-- time stamp server URL -->
  91     <property name="jalview.tsaurl" value="" />
  92     <!-- locally valid proxy for signing with external time server -->
  93     <property name="proxyPort" value="80"/>
  94     <property name="proxyHost" value="sqid"/>
  95     <!-- key sign/digest algorithms -->
  96     <property name="jalview.keyalg" value="SHA1withRSA" description="key algorithm for signing"/>
  97     <property name="jalview.keydig" value="SHA1" description="algorithm for jar digest"/>
  98
  99     <!-- default TestNG groups to run -->
 100     <property name="testng-groups" value="Functional" />
 101     <!-- Java 9 JVM args -->
 102     <condition property="java9">
 103       <equals arg1="${ant.java.version}" arg2="9"/>
 104     </condition>
 105
 106     <!-- Don't change anything below here unless you know what you are doing! -->
 107     <!-- Url path for WebStart in JNLP file -->
 108     <property name="WebStartLocation" value="http://www.jalview.org/webstart" />
 109     <!-- Webstart Image - looked for in resources/images -->
 110     <property name="WebStartImage" value="JalviewLogo_big.png" />
 111     <!-- J2SE version needed for webstart launch -->
 112     <!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
 113     <property name="j2sev" value="1.7+" />
 114     <!-- Java Compilation settings - source and target javac version -->
 115     <property name="javac.source" value="1.7" />
 116     <property name="javac.target" value="1.7" />
 117
 118     <!-- Permissions for running Java applets and applications. -->
 119     <!-- Defaults are those suitable for deploying jalview webstart www.jalview.org -->
 120     <property name="application.codebase" value="*.jalview.org" />
 121     <!-- and allowing the applet to be deployed from any URL -->
 122     <!-- note - if you want to make sure LiveConnect works without any warnings, please rebuild and sign your applet jar with your own domain included in the codebase/allowable-codebase properties -->
 123     <property name="applet.codebase" value="*.jalview.org *.dundee.ac.uk *" />
 124     <property name="applet.caller-codebase" value="${applet.codebase}" />
 125
 126     <!-- build directory configuration -->
 127     <property name="libDir" value="lib" />
 128     <property name="resourceDir" value="resources" />
 129     <property name="helpDir" value="help" />
 130     <property name="docDir" value="doc" />
 131     <property name="sourceDir" value="src" />
 132     <property name="schemaDir" value="schemas" />
 133     <property name="outputDir" value="classes" />
 134     <property name="packageDir" value="dist" />
 135     <property name="outputJar" value="jalview.jar" />
 136     <!-- Jalview Applet JMol Jar Dependency -->
 137     <property name="jmolJar" value="JmolApplet-14.6.4_2016.10.26.jar" />
 138     <property name="varnaJar" value="VARNAv3-93.jar" />
 139     <property name="jsoup" value="jsoup-1.8.1.jar" />
 140     <property name="jsonSimple" value="json_simple-1.1.jar" />
 141     <property name="javaJson" value="java-json.jar" />
 142     <property name="jalviewLiteJar" value="jalviewApplet.jar" />
 143     <property name="reportDir" value="test-reports" />
 144     <property name="testDir" value="test" />
 145     <property name="testOutputDir" value="tests" />
 146     <!-- switch to indicate if we should obfuscate jalviewLite -->
 147     <!-- <property name="donotobfuscate" value="true"/> -->
 148     <!-- switch to exclude associations from generated jnlp files -->
 149     <!-- <property name="nojnlpfileassocs" value="true"/> -->
 150
 151     <!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
 152     <property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
 153     <property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
 154     <property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
 155     <property name="wsdl.MsaWS2" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS?wsdl" />
 156     <property name="WSInterf" value="MsaWS" />
 157     <property name="wsdl.Namespace" value="vamsas" />
 158     <property name="wsdl.ClientNS" value="ext.vamsas" />
 159     <!-- the class path for building the application -->
 160     <path id="build.classpath">
 161       <fileset dir="utils">
 162         <include name="*.jar" />
 163         <include name="**/*.jar" />
 164       </fileset>
 165       <fileset dir="${libDir}">
 166         <include name="*.jar" />
 167         <include name="**/*.jar" />
 168       </fileset>
 169       <fileset dir="${java.home}/lib">
 170         <include name="plugin.jar" />
 171       </fileset>
 172       <fileset dir="appletlib">
 173         <!-- the JmolApplet includes the JmolApplet console and the application javac seems to always try and build all packages
 174                                 -->
 175         <include name="${jmolJar}" />
 176         <include name="${varnaJar}" />
 177       </fileset>
 178     </path>
 179     <path id="test.classpath">
 180       <pathelement path="${outputDir}" />
 181       <path refid="build.classpath" />
 182     </path>
 183     <property name="source.dist.name" value="${basedir}/jalview-src.tar.gz" />
 184     <!-- The Location of the java 1.1.8 jdk -->
 185     <!--<property name="java118.home" value="C:\Sun\jdk1.1.8" /> -->
 186     <property name="java118.home" value="${java.home}" />
 187     <!-- <property name="applet.jre.tools" value="${java118.home}/lib/classes.zip" />
 188                 -->
 189     <!-- jre for 1.4 version -->
 190     <property name="applet.jre.tools" value="${java.home}/lib/rt.jar" />
 191
 192     <!-- the classpath for building the 1.1 applet -->
 193     <path id="jalviewlite.deps">
 194       <fileset dir="${java118.home}">
 195         <include name="lib/classes.zip" />
 196       </fileset>
 197       <fileset dir="${java.home}/lib">
 198         <include name="plugin.jar" />
 199       </fileset>
 200       <pathelement location="appletlib/${jmolJar}" />
 201       <pathelement location="lib/${varnaJar}" />
 202       <pathelement location="appletlib/${jsoup}" />
 203       <pathelement location="appletlib/${jsonSimple}" />
 204       <pathelement location="appletlib/${javaJson}" />
 205
 206     </path>
 207     <!-- default location for outputting javadoc -->
 208     <property name="javadocDir" value="${packageDir}/javadoc" />
 209   </target>
 210
 211
 212   <taskdef classpath="utils/roxes-ant-tasks-1.2-2004-01-30.jar" resource="com/roxes/tools/ant/taskdefs.properties" />
 213   <target name="buildPropertiesFile" depends="init">
 214     <tstamp prefix="build">
 215       <format property="date" pattern="dd MMMM yyyy" />
 216     </tstamp>
 217     <exec executable="/usr/bin/git" outputproperty="git.commit" failifexecutionfails="false">
 218       <arg value="rev-parse" />
 219       <arg value="--short" />
 220       <arg value="HEAD" />
 221     </exec>
 222     <exec executable="/usr/bin/git" outputproperty="git.branch" failifexecutionfails="false">
 223       <arg value="rev-parse" />
 224       <arg value="--abbrev-ref" />
 225       <arg value="HEAD" />
 226     </exec>
 227     <properties file="${outputDir}/.build_properties">
 228       <header>
 229           ---Jalview Build Details---
 230         </header>
 231       <property name="VERSION" value="${JALVIEW_VERSION}" />
 232       <property name="INSTALLATION" value="${INSTALLATION} git-commit:${git.commit} [${git.branch}]" />
 233       <property name="BUILD_DATE" value="${build.date}" />
 234     </properties>
 235   </target>
 236
 237
 238   <target name="clean" depends="init">
 239     <!-- not efficient yet. -->
 240     <delete dir="${outputDir}" includes="*,**/*" />
 241   </target>
 242
 243   <target name="distclean" depends="init, clean">
 244
 245     <echo message="REMOVING ALL BACKUP/AUTOSAVES!" />
 246     <delete>
 247       <fileset dir=".">
 248         <include name="${outputJar}" />
 249         <include name="#*#" />
 250         <include name="#*.*#" />
 251         <include name="**/#*#" />
 252         <include name="**/#*.*#" />
 253         <include name="*~" />
 254         <include name="*.*~" />
 255         <include name="**/*~" />
 256         <include name="**/*.*~" />
 257       </fileset>
 258     </delete>
 259   </target>
 260
 261   <target name="prepare" depends="init">
 262     <mkdir dir="${outputDir}" />
 263     <copy todir="${outputDir}">
 264       <fileset dir=".">
 265         <include name="${docDir}/**/*.*" />
 266         <include name="${helpDir}/**/*.*" />
 267         <include name="${libDir}/*.jar" />
 268       </fileset>
 269       <fileset dir="${resourceDir}">
 270         <include name="**/*.*" />
 271       </fileset>
 272     </copy>
 273   </target>
 274
 275   <target name="build" depends="prepare">
 276     <!-- not efficient yet. -->
 277     <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="build.classpath">
 278       <exclude name="jalview/*applet*" />
 279       <exclude name="jalview/appletgui/**" />
 280       <exclude name="com/stevesoft/**" />
 281     </javac>
 282   </target>
 283
 284
 285   <target name="testclean" depends="init">
 286     <delete dir="${testOutputDir}" includes="*,**/*" />
 287   </target>
 288
 289   <target name="prepareTests" depends="init,testclean">
 290     <mkdir dir="${testOutputDir}" />
 291   </target>
 292
 293   <target name="buildTests" depends="build,buildindices,prepareTests">
 294     <javac source="${javac.source}" target="${javac.target}" srcdir="${testDir}" destdir="${testOutputDir}" debug="${javac.debug}" classpathref="test.classpath" includeantruntime="false">
 295     </javac>
 296   </target>
 297
 298   <taskdef resource="testngtasks" classpath="utils/testnglibs/testng.jar" />
 299
 300   <target name="testng" depends="buildTests">
 301     <testng outputDir="${reportDir}" haltOnFailure="false" groups="${testng-groups}" mode="testng"
 302       verbose="2">
 303       <classpath>
 304         <pathelement location="${testOutputDir}" />
 305         <path refid="test.classpath" />
 306       </classpath>
 307       <jvmarg value="--add-modules=java.se.ee" if:set="java9"/>
 308       <jvmarg value="--illegal-access=warn" if:set="java9"/>
 309       <classfileset dir="${testOutputDir}" includes="**/*.class" />
 310     </testng>
 311   </target>
 312
 313   <target name="buildindices" depends="init, prepare" unless="help.uptodate">
 314     <java classname="com.sun.java.help.search.Indexer" classpathref="build.classpath" fork="true" dir="${outputDir}/${helpDir}">
 315       <arg line="html" />
 316     </java>
 317   </target>
 318
 319   <target name="preparejnlp" depends="makedist">
 320     <copy todir="${packageDir}">
 321       <fileset dir="${resourceDir}/images">
 322         <include name="${WebStartImage}" />
 323       </fileset>
 324     </copy>
 325
 326     <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties" />
 327
 328     <!-- create a dummy jar which will eventually contain the jnlp template -->
 329     <jar destfile="${packageDir}/jalview_jnlp_vm.jar" index="true">
 330       <fileset dir="${packageDir}">
 331         <include name="jalview.jar" />
 332       </fileset>
 333     </jar>
 334
 335     <mkdir dir="${packageDir}/JNLP-INF" />
 336     <antcall target="writejnlpf">
 337       <param name="jnlpFile" value="${packageDir}/JNLP-INF/APPLICATION-TEMPLATE.JNLP" />
 338       <param name="inih" value="*" />
 339       <param name="maxh" value="*" />
 340     </antcall>
 341
 342     <jar destfile="${packageDir}/jalview_jnlp_vm.jar" index="true">
 343       <fileset dir="${packageDir}">
 344         <include name="JNLP-INF/APPLICATION-TEMPLATE.JNLP" />
 345       </fileset>
 346     </jar>
 347
 348     <antcall target="writejnlpf">
 349       <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
 350       <param name="inih" value="10M" />
 351       <param name="maxh" value="256M" />
 352     </antcall>
 353
 354     <antcall target="writejnlpf">
 355       <param name="jnlpFile" value="${packageDir}/jalview_1G.jnlp" />
 356       <param name="inih" value="128M" />
 357       <param name="maxh" value="512M" />
 358     </antcall>
 359
 360     <antcall target="writejnlpf">
 361       <param name="jnlpFile" value="${packageDir}/jalview_2G.jnlp" />
 362       <param name="inih" value="256M" />
 363       <param name="maxh" value="1024M" />
 364     </antcall>
 365
 366     <!-- finally, need to postprocess to add in associations at end of 'information' element
 367
 368                         <xslt in="${packageDir}/jalview_noa_1G.jnlp" out="${packageDir}/jalview_1G.jnlp">
 369
 370                 </xslt>
 371
 372
 373                         -->
 374     <!--
 375                                 <association mime-type="application-x/ext-file" extensions="fa"/>
 376         <association mime-type="application-x/ext-file" extensions="fasta"/>
 377         <association mime-type="application-x/ext-file" extensions="mfa"/>
 378         <association mime-type="application-x/ext-file" extensions="fastq"/>
 379         <association mime-type="application-x/ext-file" extensions="blc"/>
 380         <association mime-type="application-x/ext-file" extensions="msf"/>
 381         <association mime-type="application-x/ext-file" extensions="pfam"/>
 382         <association mime-type="application-x/ext-file" extensions="aln"/>
 383         <association mime-type="application-x/ext-file" extensions="pir"/>
 384         <association mime-type="application-x/ext-file" extensions="amsa"/>
 385         <association mime-type="application-x/ext-file" extensions="stk"/>
 386         <association mime-type="application-x/ext-file" extensions="jar"/>-->
 387   </target>
 388
 389   <target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp">
 390     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}"
 391       tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
 392       <fileset dir="${packageDir}">
 393         <include name="*.jar" />
 394       </fileset>
 395     </signjar>
 396   </target>
 397   <target name="-jarsignnotsa" depends="makedist,preparejnlp" unless="timestamp">
 398     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}">
 399       <fileset dir="${packageDir}">
 400         <include name="*.jar" />
 401       </fileset>
 402     </signjar>
 403   </target>
 404
 405   <target name="makefulldist" depends="makedist,preparejnlp,-jarsignwithtsa,-jarsignnotsa">
 406     <!-- and sign the jars -->
 407     <!-- the default keystore details might need to be edited here -->
 408   </target>
 409
 410   <target name="runenv" depends="init">
 411     <path id="run.classpath">
 412       <pathelement location="${outputDir}" />
 413       <fileset dir="${outputDir}">
 414         <include name="${libDir}/*.jar" />
 415       </fileset>
 416     </path>
 417     <pathconvert targetos="unix" refid="run.classpath" property="run.classpath" />
 418
 419     <echo>java -classpath ${run.classpath} jalview.bin.Jalview
 420       </echo>
 421   </target>
 422
 423   <target name="-generatejnlpf">
 424     <presetdef name="jnlpf">
 425       <jnlp codebase="${WebStartLocation}">
 426         <information>
 427           <title>Jalview</title>
 428           <vendor>The Barton Group</vendor>
 429           <homepage href="http://www.jalview.org" />
 430           <description>Jalview Multiple Alignment Editor</description>
 431           <description kind="short">Jalview</description>
 432           <icon href="${WebStartImage}" />
 433           <offline_allowed />
 434         </information>
 435         <resources>
 436           <j2se version="1.7+" />
 437           <jar main="true" href="jalview.jar"/>
 438           <fileset dir="${packageDir}">
 439             <exclude name="jalview.jar" />
 440             <include name="*.jar" />
 441             <include name="*_*.jar" />
 442             <exclude name="*quaqua*.jar" />
 443           </fileset>
 444           <property name="jalview.version" value="${JALVIEW_VERSION}" />
 445         </resources>
 446         <resources os="Mac OS X">
 447           <fileset dir="${packageDir}">
 448                  <include name="quaqua-filechooser-only-8.0.jar"/>
 449             <include name="*quaqua64*.jnilib.jar" />
 450           </fileset>
 451         </resources>
 452
 453         <application_desc main_class="jalview.bin.Jalview">
 454         </application_desc>
 455         <security>
 456           <all_permissions />
 457         </security>
 458       </jnlp>
 459     </presetdef>
 460
 461     <jnlpf toFile="${jnlpFile}" />
 462     <!-- add the add-modules j2se attribute for java 9 -->
 463     <replace file="${jnlpFile}" value="j2se version=&quot;1.7+&quot; initial-heap-size=&quot;${inih}&quot; max-heap-size=&quot;${maxh}&quot; java-vm-args=&quot;--add-modules=java.se.ee --illegal-access=warn&quot;">
 464           <replacetoken>j2se version="1.7+"</replacetoken>
 465
 466         </replace>
 467   </target>
 468
 469   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
 470     <echo message="Not adding JNLP File Associations" />
 471   </target>
 472
 473   <target name="-dojnlpfileassoc" depends="-generatejnlpf" unless="nojnlpfileassocs">
 474     <replace file="${jnlpFile}">
 475       <replacetoken>
 476         <![CDATA[</information>]]></replacetoken>
 477       <replacevalue>
 478         <![CDATA[
 479           <association mime-type="application-x/ext-file" extensions="fa" />
 480         <association mime-type="application-x/ext-file" extensions="fasta" />
 481         <association mime-type="application-x/ext-file" extensions="mfa" />
 482         <association mime-type="application-x/ext-file" extensions="fastq" />
 483         <association mime-type="application-x/ext-file" extensions="blc" />
 484         <association mime-type="application-x/ext-file" extensions="msf" />
 485         <association mime-type="application-x/ext-file" extensions="pfam" />
 486         <association mime-type="application-x/ext-file" extensions="aln"/>
 487         <association mime-type="application-x/ext-file" extensions="pir"/>
 488         <association mime-type="application-x/ext-file" extensions="amsa"/>
 489         <association mime-type="application-x/ext-file" extensions="stk"/>
 490         <association mime-type="application-x/ext-file" extensions="jvp"/>
 491       </information>]]></replacevalue>
 492   </replace>
 493   <echo message="Added file associations to JNLP file" />
 494 </target>
 495 <target name="writejnlpf" depends="-dojnlpfileassoc,-dofakejnlpfileassoc">
 496 </target>
 497
 498 <target name="buildextclients" depends="init">
 499   <input message="Building external client source from WSDLs - Do you really want to do this ? (Yy/Nn)" validargs="Y,y,n,N" defaultvalue="N" addproperty="doextbuild.response" />
 500   <condition property="dontextbuild">
 501     <equals arg1="n" arg2="${doextbuild.response}" />
 502   </condition>
 503   <condition property="dontextbuild">
 504     <equals arg1="N" arg2="${doextbuild.response}" />
 505   </condition>
 506   <fail if="dontextbuild">
 507         Build External Client Code process aborted by user. Jalview source is unchanged.
 508       </fail>
 509   <!-- Currently, this doesn't happen automatically.
 510      1. Run WSDL2Java as below, which generates an ext.vamsas +
 511      vamsas.<datapackages> fileset.
 512      2. refactor ext.vamsas.SpecificserviceWS* to
 513      ext.vamsas.ServiceclassWS* that implements the ServiceclassWSI interface.
 514      3. Update the jalview.ws.*WServices classes to reflect the
 515      interface type, and all locations of this wsdl type that Jalview
 516      might be using.
 517
 518 -->
 519   <path id="axisbuild">
 520     <path refid="build.classpath" />
 521   </path>
 522   <taskdef resource="axis-tasks.properties" classpathref="axisbuild" />
 523   <move todir="./bak">
 524     <fileset dir="${sourceDir}" id="client">
 525       <include name="${wsdl.ClientNS}/*.*" />
 526     </fileset>
 527   </move>
 528
 529   <axis-wsdl2java output="${sourceDir}" verbose="true" url="${wsdl.MsaWS2}" serverside="false" deployscope="Request" debug="false" helpergen="true" all="true">
 530     <mappingSet>
 531       <mapping namespace="${wsdl.Namespace}" package="${wsdl.ClientNS}" />
 532       <mapping namespace="http://dataTypes.vamsas" package="${wsdl.ClientNS}" />
 533     </mappingSet>
 534   </axis-wsdl2java>
 535 </target>
 536
 537 <target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
 538   <!-- make the package jar if not already existing -->
 539   <mkdir dir="${packageDir}" />
 540   <!-- clean dir if it already existed -->
 541   <delete>
 542     <fileset dir="${packageDir}">
 543       <include name="*.jar" />
 544     </fileset>
 545   </delete>
 546   <jar destfile="${packageDir}/${outputJar}" index="true">
 547     <manifest>
 548       <attribute name="Main-Class" value="jalview.bin.Jalview" />
 549       <attribute name="Permissions" value="all-permissions" />
 550       <attribute name="Application-Name" value="Jalview Desktop" />
 551       <attribute name="Codebase" value="${application.codebase}" />
 552     </manifest>
 553     <fileset dir="${outputDir}/">
 554       <exclude name="cache*/**" />
 555       <exclude name="*.jar" />
 556       <exclude name="*.jar.*" />
 557       <exclude name="**/*.jar" />
 558       <exclude name="**/*.jar.*" />
 559     </fileset>
 560   </jar>
 561
 562   <copy toDir="${packageDir}" flatten="true">
 563     <fileset dir="${outputDir}">
 564       <include name="*.jar" />
 565       <include name="**/*.jar" />
 566     </fileset>
 567   </copy>
 568 </target>
 569
 570
 571 <!-- jalopy code reformatter -->
 572 <target name="sourcescrub" depends="init,build">
 573   <jalopy destdir="jsrc" classpathref="run.classpath" convention="jalview-jalopy.xml">
 574     <fileset dir="${sourceDir}">
 575       <include name="*.java" />
 576       <include name="**/*.java" />
 577       <include name="**/**/*.java" />
 578     </fileset>
 579   </jalopy>
 580 </target>
 581
 582
 583
 584 <!-- Compile, package and obfuscate Jalview Applet -->
 585 <target name="makeApplet" depends="obfuscate" description="assemble the final jalviewLite applet jar with or without obfuscation" />
 586
 587 <target name="compileApplet" depends="init,clean">
 588   <mkdir dir="${outputDir}" />
 589   <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**,jalview/ext/ensembl/**,jalview/ext/so/**" />
 590 </target>
 591
 592 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
 593   <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
 594   <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
 595   <copy todir="${outputDir}/lang">
 596     <fileset dir="${resourceDir}/lang">
 597       <include name="**.*" />
 598     </fileset>
 599   </copy>
 600   <jar destfile="in.jar" index="true">
 601     <manifest>
 602       <attribute name="Main-Class" value="jalview.bin.JalviewLite" />
 603       <attribute name="Application-Name" value="JalviewLite" />
 604       <attribute name="Codebase" value="${applet.codebase}" />
 605     </manifest>
 606     <fileset dir="${outputDir}">
 607       <include name="com/**" />
 608       <include name="MCview/**" />
 609       <include name="jalview/**" />
 610       <include name=".build_properties" />
 611       <include name="images/idwidth.gif" />
 612       <include name="images/link.gif" />
 613       <include name="lang/**" />
 614     </fileset>
 615   </jar>
 616 </target>
 617 <target name="obfuscate" depends="-obfuscatefake,-obfuscatereally">
 618 </target>
 619 <target name="-obfuscatefake" depends="packageApplet" if="donotobfuscate">
 620   <copy file="in.jar" tofile="${jalviewLiteJar}" overwrite="true" />
 621   <delete file="in.jar" />
 622 </target>
 623 <target name="-obfuscatereally" unless="donotobfuscate">
 624
 625   <path id="obfuscateDeps.path">
 626     <pathelement location="${applet.jre.tools}" />
 627     <pathelement location="appletlib/${jmolJar}" />
 628     <pathelement location="lib/${varnaJar}" />
 629     <pathelement location="appletlib/${jsoup}" />
 630     <pathelement location="appletlib/${jsonSimple}" />
 631     <pathelement location="appletlib/${javaJson}" />
 632     <fileset dir="${java.home}/lib">
 633       <include name="plugin.jar" />
 634     </fileset>
 635   </path>
 636   <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
 637
 638   <proguard verbose="true" >
 639     <injar file="in.jar" />
 640     <outjar file="${jalviewLiteJar}" />
 641     <libraryjar refid="obfuscateDeps.path" />
 642     <dontwarn />
 643     <keep access="public" type="class" name="jalview.bin.JalviewLite">
 644       <field access="public" />
 645       <method access="public" />
 646       <constructor access="public" />
 647     </keep>
 648     <keep access="public" type="class" name="jalview.appletgui.AlignFrame">
 649       <field access="public" />
 650       <method access="public" />
 651       <constructor access="public" />
 652     </keep>
 653
 654     <keep name="jalview.json.binding**">
 655       <constructor/>
 656       <method name="*"/>
 657     </keep>
 658
 659     <keep access="public" type="class" name="MCview.PDBfile">
 660       <field access="public" />
 661       <method access="public" />
 662       <constructor access="public" />
 663     </keep>
 664
 665     <keep access="public" type="class" name="jalview.ws.jws1.Annotate3D">
 666       <field access="public" />
 667       <method access="public" />
 668       <constructor access="public" />
 669     </keep>
 670
 671     <keep access="public" type="class" name="jalview.ext.jmol.JmolParser">
 672       <field access="public" />
 673       <method access="public" />
 674       <constructor access="public" />
 675     </keep>
 676
 677
 678     <!--      -libraryjars "${obfuscateDeps}"
 679       -injars      in.jar
 680       -outjars     jalviewApplet.jar
 681       -keep public class jalview.bin.JalviewLite
 682        { public * ; } -->
 683   </proguard>
 684   <delete file="in.jar" />
 685 </target>
 686
 687 <target name="castorbinding" depends="init" description="Generate Java bindings to supported Jalview XML models.">
 688   <taskdef name="castor-srcgen" classname="org.castor.anttask.CastorCodeGenTask" classpathref="build.classpath" />
 689   <delete>
 690     <fileset dir="${sourceDir}/jalview/schemabinding/version2">
 691       <include name="*.java" />
 692       <include name="descriptors/*.java" />
 693     </fileset>
 694   </delete>
 695   <castor-srcgen file="${schemaDir}/vamsas.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
 696   <castor-srcgen file="${schemaDir}/JalviewUserColours.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
 697   <castor-srcgen file="${schemaDir}/JalviewWsParamSet.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
 698   <castor-srcgen file="${schemaDir}/jalview.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
 699   <!--
 700                 now build the jalview.binding package with the old schema set
 701                 -->
 702   <delete>
 703     <fileset dir="${sourceDir}/jalview/binding/">
 704       <include name="**" />
 705     </fileset>
 706   </delete>
 707   <castor-srcgen file="${schemaDir}/vamsasJvV1.xsd" todir="${sourceDir}" package="jalview.binding" warnings="false" nodesc="true" verbose="true" properties="${schemaDir}/jalview.nodesc.properties" />
 708   <castor-srcgen file="${schemaDir}/JalviewUserColours.xsd" todir="${sourceDir}" package="jalview.binding" warnings="false" nodesc="true" verbose="true" properties="${schemaDir}/jalview.nodesc.properties" />
 709   <castor-srcgen file="${schemaDir}/jalviewJvV1.xsd" todir="${sourceDir}" package="jalview.binding" warnings="false" nodesc="true" verbose="true" properties="${schemaDir}/jalview.nodesc.properties" />
 710 </target>
 711 <target name="sourcedist" description="create jalview source distribution" depends="init">
 712   <delete file="${source.dist.name}" />
 713   <!-- temporary copy of source to update timestamps -->
 714   <copy todir="_sourcedist">
 715     <fileset dir=".">
 716       <exclude name=".*" />
 717       <exclude name="**/.*" />
 718       <exclude name="*.class" />
 719       <exclude name="**/*.class" />
 720       <include name="LICENSE" />
 721       <include name="README" />
 722       <include name="build.xml" />
 723       <include name="jalview-jalopy.xml" />
 724       <include name="JalviewApplet.jpx" />
 725       <include name="JalviewX.jpx" />
 726       <include name="nbbuild.xml" />
 727       <include name="nbproject/genfiles.properties" />
 728       <include name="nbproject/project.properties" />
 729       <include name="nbproject/project.xml" />
 730       <include name="${sourceDir}/*.java" />
 731       <include name="${sourceDir}/**/*.java" />
 732       <include name="${sourceDir}/**/*.cdr" />
 733       <include name="${libDir}/**/*" />
 734       <include name="${resourceDir}/**/*" />
 735       <include name="${helpDir}/**/*" />
 736       <include name="appletlib/${jmolJar}" />
 737       <include name="appletlib/${jsonSimple}" />
 738       <include name="appletlib/${javaJson}" />
 739       <exclude name="**/*locales" />
 740       <exclude name="*locales/**" />
 741       <exclude name="utils/InstallAnywhere/**Build.iap_xml" />
 742       <exclude name="utils/InstallAnywhere/**Build*/**" />
 743       <exclude name="utils/InstallAnywhere/**Build*/**" />
 744       <exclude name="utils/InstallAnywhere/.build*.*/**" />
 745       <exclude name="utils/InstallAnywhere/**locale*" />
 746       <exclude name="utils/InstallAnywhere/**locale*/**" />
 747       <exclude name="utils/InstallAnywhere/**locale*/**" />
 748       <include name="${schemaDir}/**/*" />
 749       <include name="utils/**/*" />
 750       <include name="${docDir}/**/*" />
 751       <include name="examples/**/*" />
 752     </fileset>
 753   </copy>
 754
 755   <tstamp prefix="build">
 756     <format property="year" pattern="yyyy" />
 757   </tstamp>
 758   <!-- each replacetoken CDATA body must be on one line -
 759        otherwise the pattern doesn't match -->
 760   <replace value="${JALVIEW_VERSION}">
 761     <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
 762     <fileset dir="_sourcedist">
 763       <include name="**/*" />
 764     </fileset>
 765   </replace>
 766   <replace dir="_sourcedist" value="${build.year}">
 767     <replacetoken><![CDATA[$$Year-Rel$$]]></replacetoken>
 768     <fileset dir="_sourcedist">
 769       <include name="**/*" />
 770     </fileset>
 771   </replace>
 772
 773   <tar destfile="${source.dist.name}" compression="gzip">
 774     <tarfileset dir="_sourcedist/" prefix="jalview" preserveLeadingSlashes="true">
 775     </tarfileset>
 776   </tar>
 777
 778   <delete dir="_sourcedist" />
 779 </target>
 780 <target name="prepubapplet_1" depends="makeApplet">
 781   <copy todir="${packageDir}/examples">
 782     <fileset dir="examples">
 783       <include name="**/*" />
 784       <include name="javascript/*" />
 785       <include name="jmol/*" />
 786     </fileset>
 787     <fileset dir=".">
 788       <include name="${jalviewLiteJar}" />
 789     </fileset>
 790     <fileset dir="appletlib">
 791       <include name="**/*" />
 792     </fileset>
 793   </copy>
 794   <jar update="true" index="true" jarfile="${packageDir}/examples/${jalviewLiteJar}" />
 795   <jar update="true" index="true" jarfile="${packageDir}/examples/${javaJson}" />
 796   <jar update="true" index="true" jarfile="${packageDir}/examples/${jsonSimple}" />
 797   <jar update="true" index="true" jarfile="${packageDir}/examples/${jmolJar}">
 798     <manifest>
 799       <attribute name="Application-Name" value="Jmol (bundled with JalviewLite)" />
 800       <!--          <attribute name="Permissions" value="sandbox" /> -->
 801       <!--<attribute name="Trusted-Lib" value="true" /> -->
 802       <attribute name="Codebase" value="${applet.codebase}" />
 803       <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
 804     </manifest>
 805   </jar>
 806
 807   <presetdef name="ap_applet.jar">
 808     <!-- build a signed applet with 'all-permissions' -
 809                           Needs 'param name="permissions' value="all-permissions"' in applet tag
 810                           JalviewLite+JmolApplet linked sequence/structure fails
 811                           Mixed code warnings are raised
 812                           -->
 813     <jar update="true" index="true">
 814       <manifest>
 815         <attribute name="Application-Name" value="JalviewLite" />
 816         <attribute name="Permissions" value="all-permissions" />
 817         <attribute name="Codebase" value="${applet.codebase}" />
 818         <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
 819         <attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}" />
 820       </manifest>
 821     </jar>
 822   </presetdef>
 823   <presetdef name="applet.jar">
 824     <!-- build signed applet with sandbox permissions -
 825                           Needs 'param name="permissions' value="sandbox"' in applet tag
 826                          Preserves Pre-Java 1.7_u45 behavior once 'permissions' parameter added to applet tag
 827                         -->
 828
 829     <jar update="true" index="true">
 830       <manifest>
 831         <attribute name="Application-Name" value="JalviewLite" />
 832         <attribute name="Permissions" value="sandbox" />
 833         <attribute name="Codebase" value="${applet.codebase}" />
 834         <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
 835         <attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}" />
 836       </manifest>
 837     </jar>
 838   </presetdef>
 839   <presetdef name="tl_applet.jar">
 840     <!-- build signed applet with trusted library/trusted permissions -
 841                                 Needs 'param name="permissions' value="all-permissions"' in applet tag
 842                                j1.7_45:
 843                                No mixed code warnings raised
 844                                Jmol/JalviewLite sequence/structure example doesn't link structures
 845                                Raises dialog asking user to allow page to control applet via LiveConnect javascript
 846
 847                               -->
 848
 849     <jar update="true" index="true">
 850       <manifest>
 851         <attribute name="Application-Name" value="JalviewLite" />
 852         <attribute name="Permissions" value="all-permissions" />
 853         <attribute name="Codebase" value="${applet.codebase}" />
 854         <attribute name="Trusted-Only" value="true" />
 855         <attribute name="Trusted-Library" value="true" />
 856       </manifest>
 857     </jar>
 858   </presetdef>
 859   <presetdef name="to_applet.jar">
 860     <!-- not fully test variant (yet) -->
 861     <jar update="true" index="true">
 862       <manifest>
 863         <attribute name="Application-Name" value="JalviewLite" />
 864         <attribute name="Permissions" value="all-permissions" />
 865         <attribute name="Codebase" value="${applet.codebase}" />
 866         <attribute name="Trusted-Only" value="true" />
 867       </manifest>
 868     </jar>
 869   </presetdef>
 870   <!-- create differently privileged artefacts -->
 871   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/u_${jalviewLiteJar}" />
 872   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
 873   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/u_${javaJson}" overwrite="true" />
 874   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/u_${jsonSimple}" overwrite="true" />
 875   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/ap_${jalviewLiteJar}" />
 876   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/ap_${jmolJar}" />
 877   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/ap_${javaJson}" />
 878   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/ap_${jsonSimple}" />
 879   <ap_applet.jar jarfile="${packageDir}/examples/ap_${jalviewLiteJar}" />
 880   <ap_applet.jar jarfile="${packageDir}/examples/ap_${jmolJar}" />
 881   <ap_applet.jar jarfile="${packageDir}/examples/ap_${javaJson}" />
 882   <ap_applet.jar jarfile="${packageDir}/examples/ap_${jsonSimple}" />
 883   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/tl_${jalviewLiteJar}" />
 884   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/tl_${jmolJar}" />
 885   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/tl_${javaJson}" />
 886   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/tl_${jsonSimple}" />
 887   <tl_applet.jar jarfile="${packageDir}/examples/tl_${jalviewLiteJar}" />
 888   <tl_applet.jar jarfile="${packageDir}/examples/tl_${jmolJar}" />
 889   <tl_applet.jar jarfile="${packageDir}/examples/tl_${javaJson}" />
 890   <tl_applet.jar jarfile="${packageDir}/examples/tl_${jsonSimple}" />
 891   <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/to_${jalviewLiteJar}" />
 892   <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/to_${jmolJar}" />
 893   <copy file="${packageDir}/examples/${javaJson}" tofile="${packageDir}/examples/to_${javaJson}" />
 894   <copy file="${packageDir}/examples/${jsonSimple}" tofile="${packageDir}/examples/to_${jsonSimple}" />
 895   <to_applet.jar jarfile="${packageDir}/examples/to_${jalviewLiteJar}" />
 896   <to_applet.jar jarfile="${packageDir}/examples/to_${jmolJar}" />
 897   <to_applet.jar jarfile="${packageDir}/examples/to_${javaJson}" />
 898   <to_applet.jar jarfile="${packageDir}/examples/to_${jsonSimple}" />
 899   <!-- finally, create manifest for original jars -->
 900   <applet.jar jarfile="${packageDir}/examples/${jalviewLiteJar}" />
 901   <applet.jar jarfile="${packageDir}/examples/${jmolJar}" />
 902   <applet.jar jarfile="${packageDir}/examples/${javaJson}" />
 903   <applet.jar jarfile="${packageDir}/examples/${jsonSimple}" />
 904
 905   <!-- todo - write examples/downloads for alternate versions of the applet
 906     probably don't need to do this now since we don't have alternate versions anymore !-->
 907 </target>
 908 <target name="-signapplet" depends="prepubapplet_1">
 909   <fileset id="signappletjarset" dir="${packageDir}/examples">
 910     <exclude name="u_*.jar" />
 911     <include name="${jalviewLiteJar}" />
 912     <include name="${jmolJar}" />
 913     <include name="${javaJson}" />
 914     <include name="${jsonSimple}" />
 915     <include name="to_${jalviewLiteJar}" />
 916     <include name="to_${jmolJar}" />
 917     <include name="to_${javaJson}" />
 918     <include name="to_${jsonSimple}" />
 919     <include name="tl_${jalviewLiteJar}" />
 920     <include name="tl_${jmolJar}" />
 921     <include name="tl_${javaJson}" />
 922     <include name="tl_${jsonSimple}" />
 923     <include name="ap_${jalviewLiteJar}" />
 924     <include name="ap_${jmolJar}" />
 925     <include name="ap_${javaJson}" />
 926     <include name="ap_${jsonSimple}" />
 927   </fileset>
 928 </target>
 929 <target name="-signappletnotsa" unless="timestamp" depends="-signapplet">
 930   <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
 931     <fileset refid="signappletjarset" />
 932   </signjar>
 933 </target>
 934
 935 <target name="-signapplettsa" if="timestamp" depends="-signapplet">
 936   <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
 937     <fileset refid="signappletjarset" />
 938   </signjar>
 939 </target>
 940
 941 <target name="signApplet" description="internal target to sign applet" depends="-signappletnotsa,-signapplettsa" />
 942
 943 <target name="pubapplet" description="installs the jalviewLite applet and dependent jars into an applet examples directory built under ${outputDir}" depends="makeApplet, signApplet">
 944
 945   <!-- bizarre bug causes JmolApplet to always get signed, even if excluded from above. so copy explicitly -->
 946   <copy file="appletlib/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
 947   <copy file="appletlib/${jsonSimple}" tofile="${packageDir}/examples/u_${jsonSimple}" overwrite="true" />
 948   <copy file="appletlib/${javaJson}" tofile="${packageDir}/examples/u_${javaJson}" overwrite="true" />
 949   <!-- finally, replace any launchApp servlet tags with a version specification -->
 950   <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}&quot;">
 951     <replacetoken>
 952       <![CDATA[http://www.jalview.org/services/launchApp"]]>
 953     </replacetoken>
 954     <fileset dir="${packageDir}/examples">
 955       <include name="**/*.html" />
 956     </fileset>
 957   </replace>
 958   <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}'">
 959     <replacetoken>
 960       <![CDATA[http://www.jalview.org/services/launchApp']]>
 961     </replacetoken>
 962     <fileset dir="${packageDir}/examples">
 963       <include name="**/*.html" />
 964     </fileset>
 965   </replace>
 966
 967 </target>
 968 <target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
 969   <javadoc destdir="${javadocDir}">
 970     <packageset dir="${sourceDir}" includes="jalview/*,MCView/*">
 971     </packageset>
 972   </javadoc>
 973 </target>
 974 <target name="linkcheck" depends="init,prepare">
 975   <javac srcdir="utils" destdir="utils" includes="HelpLinksChecker.java"/>
 976   <java fork="true" dir="${helpDir}" classpath="utils" classname="HelpLinksChecker" failonerror="true">
 977     <arg file="${helpDir}"/>
 978     <arg value="-nointernet"/>
 979   </java>
 980 </target>
 981 </project>