build.xml

   1 <?xml version="1.0"?>
   2   <project name="jalviewX" default="build" basedir=".">
   3     <!-- utils is a class path to additional utilities needed for
   4     building docs, jars and webstart stuff -->
   5
   6 <!--
   7         Userdefined build property defaults
   8
   9         wsdl.server list (plus namespace mapping info ???)  - also want
  10                 ... to make this a dynamically generatable property
  11         WebStart Location
  12         Build location - provide a temporary root for speed
  13         jarsigner keystore and info
  14         Jakarta and axis classpath ?
  15         Default argument for starting Jalview (if it exists).
  16
  17 -->
  18
  19     <target name="init">
  20       <path id="axis.classpath">
  21 <!-->        <fileset dir="/usr/local/axis/lib">
  22           <include name="**/*.jar" />
  23         </fileset>
  24         <fileset dir="/usr/local/jakarta-tomcat-5/webapps/axis/WEB-INF/lib">
  25           <include name="**/*.jar"/>
  26           <include name="*.jar"/>
  27         </fileset> -->
  28       </path>
  29
  30       <property name="" value=""/>
  31       <property name="libDir" value="lib"/>
  32       <property name="resourceDir" value="resources"/>
  33       <property name="helpDir" value="help"/>
  34       <property name="docDir" value="doc"/>
  35       <property name="sourceDir" value="src" />
  36       <property name="outputDir" value="classes" />
  37       <property name="packageDir" value="dist" />
  38       <property name="outputJar" value="jalview.jar" />
  39       <property name="wsdl.File" value="http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred?wsdl" />
  40       <property name="wsdl.Files" value="http://anaplog.compbio.dundee.ac.uk:8080/axis/services/vamsas?wsdlFiles" />
  41       <property name="wsdl.MsaWS" value="http://anaplog.compbio.dundee.ac.uk:8080/axis/services/MuscleWS?wsdl" />
  42
  43       <property name="WebStartLocation" value="http://www.compbio.dundee.ac.uk/~jimp/jalviewtest"/>
  44       <property name="wsdl.Namespace" value="vamsas" />
  45       <property name="wsdl.ClientNS" value="ext.vamsas" />
  46
  47       <path id="build.classpath">
  48         <fileset dir="utils">
  49           <include name="*.jar"/>
  50           <include name="**/*.jar"/>
  51         </fileset>
  52         <fileset dir="${libDir}">
  53           <include name="*.jar"/>
  54           <include name="**/*.jar"/>
  55         </fileset>
  56 <!--        <fileset dir="old_lib_signed">
  57 <include name="lib_axis.jar"/>
  58
  59         </fileset>-->
  60       </path>
  61       <!-->    <uptodate property="help.uptodate"
  62       targetfile="${helpDir}/helpIndex.xml">
  63       <srcfiles
  64                  dir="${helpDir}"
  65                  includes="**/*.html" />
  66                </uptodate>
  67       -->
  68     </target>
  69
  70     <target name="clean" depends="init">
  71       <!-- not efficient yet. -->
  72       <delete dir="${outputDir}"/>
  73     </target>
  74
  75     <target name="distclean" depends="init, clean">
  76
  77       <echo message="REMOVING ALL BACKUP/AUTOSAVES!"/>
  78       <delete>
  79         <fileset dir=".">
  80           <include name="${outputJar}"/>
  81           <include name="#*#"/>
  82           <include name="#*.*#"/>
  83           <include name="**/#*#"/>
  84           <include name="**/#*.*#"/>
  85           <include name="*~"/>
  86           <include name="*.*~"/>
  87           <include name="**/*~"/>
  88           <include name="**/*.*~"/>
  89         </fileset>
  90       </delete>
  91     </target>
  92
  93     <target name="prepare" depends="init">
  94       <mkdir dir="${outputDir}"/>
  95       <copy todir="${outputDir}">
  96         <fileset dir=".">
  97
  98           <include name="${docDir}/**/*.*"/>
  99           <include name="${helpDir}/**/*.*"/>
 100           <include name="${libDir}/*.*"/>
 101         </fileset>
 102         <fileset dir="${resourceDir}">
 103           <include name="**/*.*"/>
 104         </fileset>
 105       </copy>
 106     </target>
 107
 108     <target name="build" depends="prepare">
 109       <!-- not efficient yet. -->
 110       <javac source="1.4" target="1.4" srcdir="${sourceDir}" destdir="${outputDir}"
 111       classpathref="build.classpath" />
 112     </target>
 113     <target name="buildindices" depends="init, prepare"
 114     unless="help.uptodate">
 115     <java
 116       classname="com.sun.java.help.search.Indexer"
 117       classpathref="build.classpath"
 118       fork="true"
 119       dir="${outputDir}/${helpDir}"
 120       >
 121       <arg line="html"/>
 122     </java>
 123     </target>
 124
 125     <target name="makejars" depends="build, buildindices">
 126       <!-- make the package jar -->
 127       <mkdir dir="${packageDir}"/>
 128
 129       <jar destfile="${packageDir}/${outputJar}">
 130         <fileset dir="${outputDir}/">
 131           <exclude name="*.jar" />
 132           <exclude name="*.jar.*" />
 133           <exclude name="**/*.jar" />
 134           <exclude name="**/*.jar.*" />
 135         </fileset>
 136       </jar>
 137
 138       <copy toDir="${packageDir}" flatten="true">
 139         <fileset dir="${outputDir}">
 140           <include name="*.jar"/>
 141           <include name="**/*.jar"/>
 142         </fileset>
 143       </copy>
 144
 145       <signjar
 146       storepass="alignmentisfun"
 147       keypass="alignmentisfun"
 148       keystore="keys/.keystore"
 149       alias="jalview"
 150       lazy="false"
 151       verbose="false"
 152       >
 153
 154       <fileset dir="${packageDir}">
 155         <include name="*.jar"/>
 156       </fileset>
 157       </signjar>
 158       <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
 159
 160       <!--    codebase="http://www.jalview.org/jalview/webstart" -->
 161       <jnlp toFile="${packageDir}/Jalview.jnlp" href="Jalview.jnlp"
 162       codebase="${WebStartLocation}">
 163       <information>
 164         <title>Jalview</title>
 165         <vendor>Barton Group</vendor>
 166         <homepage href="www.jalview.org"/>
 167         <description>Jalview Multiple Alignment Editor</description>
 168         <description kind="short">Jalview</description>
 169         <icon href="BartonGroupBanner.gif"/>
 170       </information>
 171         <resources>
 172           <j2se version="1.3+"/>
 173           <fileset dir="${packageDir}">
 174             <include name="jalview.jar"/>
 175           </fileset>
 176           <fileset dir="${packageDir}">
 177             <include name="*.jar"/>
 178             <exclude name="jalview.jar"/>
 179           </fileset>
 180         </resources>
 181         <application_desc main_class="jalview.bin.Jalview">
 182           <argument>http://www.compbio.dundee.ac.uk/~andrew/jalview/glut.msf</argument>
 183         </application_desc>
 184         <security>
 185           <all_permissions/>
 186         </security>
 187       </jnlp>
 188     </target>
 189     <target name="runenv" depends="init">
 190       <path id="run.classpath">
 191         <pathelement location="${outputDir}"/>
 192         <fileset dir="${outputDir}">
 193           <include name="${libDir}/*.jar"/>
 194         </fileset>
 195       </path>
 196       <pathconvert targetos="unix" refid="run.classpath" property="run.classpath"/>
 197
 198       <echo>java -classpath ${run.classpath} jalview.bin.Jalview
 199       </echo>
 200     </target>
 201
 202     <target name="buildextclients" depends="init">
 203       <path id="axisbuild">
 204         <!--        <path refid="axis.classpath"/> -->
 205         <path refid="build.classpath"/>
 206       </path>
 207       <taskdef resource="axis-tasks.properties" classpathref="axisbuild"/>
 208       <move todir="./bak">
 209         <fileset dir="${sourceDir}" id="client">
 210           <include name="${wsdl.ClientNS}/*.*"/>
 211         </fileset>
 212       </move>
 213
 214       <axis-wsdl2java
 215       output="${sourceDir}"
 216       verbose="true"
 217       url="${wsdl.MsaWS}"
 218       serverside="false"
 219       deployscope="Request"
 220       debug="false"
 221       helpergen="true"
 222       all="true"
 223       >
 224       <mappingSet>
 225         <mapping
 226         namespace="${wsdl.Namespace}"
 227         package="${wsdl.ClientNS}"
 228         />
 229         <mapping namespace="http://dataTypes.vamsas"
 230         package="${wsdl.ClientNS}"/>
 231         </mappingSet>
 232     </axis-wsdl2java>
 233
 234   </target>
 235   <target name="package" depends="init, build">
 236
 237   </target>
 238 </project>