build.xml

   1 <?xml version="1.0"?>
   2   <project name="jalviewX" default="build" basedir=".">
   3 <!-- we use jalopy to format our sources -->
   4 <taskdef name="jalopy"
   5          classname="de.hunsicker.jalopy.plugin.ant.AntPlugin">
   6   <classpath>
   7     <fileset dir="utils/jalopy/lib">
   8       <include name="*.jar" />
   9     </fileset>
  10   </classpath>
  11 </taskdef>
  12     <!-- utils is a class path to additional utilities needed for
  13     building docs, jars and webstart stuff -->
  14
  15 <!--
  16         Userdefined build property defaults
  17
  18         wsdl.server list (plus namespace mapping info ???)  - also want
  19                 ... to make this a dynamically generatable property
  20         WebStart Location
  21         Build location - provide a temporary root for speed
  22         jarsigner keystore and info
  23         Jakarta and axis classpath ?
  24         Default argument for starting Jalview (if it exists).
  25
  26 -->
  27
  28     <target name="init">
  29       <path id="axis.classpath">
  30 <!-->        <fileset dir="/usr/local/axis/lib">
  31           <include name="**/*.jar" />
  32         </fileset>
  33         <fileset dir="/usr/local/jakarta-tomcat-5/webapps/axis/WEB-INF/lib">
  34           <include name="**/*.jar"/>
  35           <include name="*.jar"/>
  36         </fileset> -->
  37       </path>
  38
  39       <property name="" value=""/>
  40       <property name="libDir" value="lib"/>
  41       <property name="resourceDir" value="resources"/>
  42       <property name="helpDir" value="help"/>
  43       <property name="docDir" value="doc"/>
  44       <property name="sourceDir" value="src" />
  45       <property name="outputDir" value="classes" />
  46       <property name="packageDir" value="dist" />
  47       <property name="outputJar" value="jalview.jar" />
  48       <property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
  49       <property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
  50       <property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
  51       <property name="wsdl.MsaWS2" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS?wsdl" />
  52       <property name="wsdl.MsaWS2" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS?wsdl" />
  53         <property name="WSInterf" value="MsaWS" />
  54       <property name="WebStartLocation" value="http://www.jalview.org/webstart"/>
  55       <property name="wsdl.Namespace" value="vamsas" />
  56       <property name="wsdl.ClientNS" value="ext.vamsas" />
  57
  58       <path id="build.classpath">
  59         <fileset dir="utils">
  60           <include name="*.jar"/>
  61           <include name="**/*.jar"/>
  62         </fileset>
  63         <fileset dir="${libDir}">
  64           <include name="*.jar"/>
  65           <include name="**/*.jar"/>
  66         </fileset>
  67 <!--        <fileset dir="old_lib_signed">
  68 <include name="lib_axis.jar"/>
  69
  70         </fileset>-->
  71       </path>
  72       <!-->    <uptodate property="help.uptodate"
  73       targetfile="${helpDir}/helpIndex.xml">
  74       <srcfiles
  75                  dir="${helpDir}"
  76                  includes="**/*.html" />
  77                </uptodate>
  78       -->
  79     </target>
  80
  81     <target name="clean" depends="init">
  82       <!-- not efficient yet. -->
  83       <delete dir="${outputDir}"/>
  84     </target>
  85
  86     <target name="distclean" depends="init, clean">
  87
  88       <echo message="REMOVING ALL BACKUP/AUTOSAVES!"/>
  89       <delete>
  90         <fileset dir=".">
  91           <include name="${outputJar}"/>
  92           <include name="#*#"/>
  93           <include name="#*.*#"/>
  94           <include name="**/#*#"/>
  95           <include name="**/#*.*#"/>
  96           <include name="*~"/>
  97           <include name="*.*~"/>
  98           <include name="**/*~"/>
  99           <include name="**/*.*~"/>
 100         </fileset>
 101       </delete>
 102     </target>
 103
 104     <target name="prepare" depends="init">
 105       <mkdir dir="${outputDir}"/>
 106       <copy todir="${outputDir}">
 107         <fileset dir=".">
 108
 109           <include name="${docDir}/**/*.*"/>
 110           <include name="${helpDir}/**/*.*"/>
 111           <include name="${libDir}/*.*"/>
 112         </fileset>
 113         <fileset dir="${resourceDir}">
 114           <include name="**/*.*"/>
 115         </fileset>
 116       </copy>
 117     </target>
 118
 119     <target name="build" depends="prepare">
 120       <!-- not efficient yet. -->
 121       <javac source="1.4" target="1.4" srcdir="${sourceDir}" destdir="${outputDir}"
 122       classpathref="build.classpath" />
 123     </target>
 124     <target name="buildindices" depends="init, prepare"
 125     unless="help.uptodate">
 126     <java
 127       classname="com.sun.java.help.search.Indexer"
 128       classpathref="build.classpath"
 129       fork="true"
 130       dir="${outputDir}/${helpDir}"
 131       >
 132       <arg line="html"/>
 133     </java>
 134     </target>
 135
 136     <target name="makejars" depends="build, buildindices">
 137       <!-- make the package jar -->
 138       <mkdir dir="${packageDir}"/>
 139
 140       <jar destfile="${packageDir}/${outputJar}">
 141         <fileset dir="${outputDir}/">
 142           <exclude name="*.jar" />
 143           <exclude name="*.jar.*" />
 144           <exclude name="**/*.jar" />
 145           <exclude name="**/*.jar.*" />
 146         </fileset>
 147       </jar>
 148
 149       <copy toDir="${packageDir}" flatten="true">
 150         <fileset dir="${outputDir}">
 151           <include name="*.jar"/>
 152           <include name="**/*.jar"/>
 153         </fileset>
 154       </copy>
 155 <!-- the default keystore details might need to be edited here -->
 156       <signjar
 157       storepass="alignmentisfun"
 158       keypass="alignmentisfun"
 159       keystore="keys/.keystore"
 160       alias="jalview"
 161       lazy="false"
 162       verbose="false"
 163       >
 164
 165       <fileset dir="${packageDir}">
 166         <include name="*.jar"/>
 167       </fileset>
 168       </signjar>
 169       <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
 170
 171       <!--    codebase="http://www.jalview.org/jalview/webstart" -->
 172       <jnlp toFile="${packageDir}/Jalview.jnlp" href="Jalview.jnlp"
 173       codebase="${WebStartLocation}">
 174       <information>
 175         <title>Jalview</title>
 176         <vendor>Barton Group</vendor>
 177         <homepage href="www.jalview.org"/>
 178         <description>Jalview Multiple Alignment Editor</description>
 179         <description kind="short">Jalview</description>
 180         <icon href="BartonGroupBanner.gif"/>
 181       </information>
 182         <resources>
 183           <j2se version="1.3+"/>
 184           <fileset dir="${packageDir}">
 185             <include name="jalview.jar"/>
 186           </fileset>
 187           <fileset dir="${packageDir}">
 188             <include name="*.jar"/>
 189             <exclude name="jalview.jar"/>
 190           </fileset>
 191         </resources>
 192         <application_desc main_class="jalview.bin.Jalview">
 193           </application_desc>
 194         <security>
 195           <all_permissions/>
 196         </security>
 197       </jnlp>
 198     </target>
 199     <target name="runenv" depends="init">
 200       <path id="run.classpath">
 201         <pathelement location="${outputDir}"/>
 202         <fileset dir="${outputDir}">
 203           <include name="${libDir}/*.jar"/>
 204         </fileset>
 205       </path>
 206       <pathconvert targetos="unix" refid="run.classpath" property="run.classpath"/>
 207
 208       <echo>java -classpath ${run.classpath} jalview.bin.Jalview
 209       </echo>
 210     </target>
 211
 212     <target name="buildextclients" depends="init">
 213 <!-- Currently, this doesn't happen automatically.
 214      1. Run WSDL2Java as below, which generates an ext.vamsas +
 215      vamsas.<datapackages> fileset.
 216      2. refactor ext.vamsas.SpecificserviceWS* to
 217      ext.vamsas.ServiceclassWS* that implements the ServiceclassWSI interface.
 218      3. Update the jalview.ws.*WServices classes to reflect the
 219      interface type, and all locations of this wsdl type that Jalview
 220      might be using.
 221
 222 -->
 223       <path id="axisbuild">
 224         <!--        <path refid="axis.classpath"/> -->
 225         <path refid="build.classpath"/>
 226       </path>
 227       <taskdef resource="axis-tasks.properties" classpathref="axisbuild"/>
 228       <move todir="./bak">
 229         <fileset dir="${sourceDir}" id="client">
 230           <include name="${wsdl.ClientNS}/*.*"/>
 231         </fileset>
 232       </move>
 233
 234       <axis-wsdl2java
 235       output="${sourceDir}"
 236       verbose="true"
 237       url="${wsdl.MsaWS2}"
 238       serverside="false"
 239       deployscope="Request"
 240       debug="false"
 241       helpergen="true"
 242       all="true"
 243       >
 244       <mappingSet>
 245         <mapping
 246         namespace="${wsdl.Namespace}"
 247         package="${wsdl.ClientNS}"
 248         />
 249         <mapping namespace="http://dataTypes.vamsas"
 250         package="${wsdl.ClientNS}"/>
 251         </mappingSet>
 252     </axis-wsdl2java>
 253
 254   </target>
 255   <target name="package" depends="init, build">
 256
 257   </target>
 258   <!-- jalopy code reformatter -->
 259   <target name="sourcescrub" depends="init,build">
 260     <jalopy destdir="jsrc" classpathref="run.classpath"
 261       convention="jalview-jalopy.xml">
 262       <fileset dir="${sourceDir}">
 263         <include name="*.java"/>
 264         <include name="**/*.java"/>
 265         <include name="**/**/*.java"/>
 266       </fileset>
 267       </jalopy>
 268   </target>
 269
 270 </project>