examples-jbake/templates/jvl_embedded.ftl

   1
   2 <h1>Embedded viewing of Alignments</h1>
   3 <p>The alignment below was generated from the following files:
   4   <ul>
   5     <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
   6       FASTA format</li>
   7     <li><a href="plantfdx.features">plantfdx.features</a> - Jalview
   8       Format Sequence Features file</li>
   9     <li><a href="plantfdx.annotations">plantfdx.annotations</a> -
  10       Jalview Alignment Annotations File</li>
  11   </ul>
  12   <@jvlitebutton appjar="${content.jvl}" width=756 height=560
  13                  params={
  14                  "file":"plantfdx.fa",
  15                  "annotations":"plantfdx.annotations",
  16                  "features":"plantfdx.features",
  17                  "embedded":"true",
  18                  "userDefinedColour":"C=yellow; R,K,H=FF5555; D,E=5555FF",
  19                  "showFullId":"false"}
  20   >
  21   </@jvlitebutton>
  22 </p>