examples/embedded.html

   1 <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">\r
   2 <html xmlns="http://www.w3.org/1999/xhtml">\r
   3 <title>\r
   4 Embedded viewing of Alignments\r
   5 </title>\r
   6 <body>\r
   7 <h1>Embedded viewing of Alignments</h1>\r
   8 <p>The alignment below was generated from the following files:\r
   9 <ul>\r
  10         <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in\r
  11         FASTA format</li>\r
  12         <li><a href="plantfdx.features">plantfdx.features</a> - Jalview\r
  13         Format Sequence Features file</li>\r
  14         <li><a href="plantfdx.annotations">plantfdx.annotations</a> -\r
  15         Jalview Alignment Annotations File</li>\r
  16 </ul>\r
  17 <applet code="jalview.bin.JalviewLite"\r
  18                         width="756" height="560" archive="../../jalviewApplet.jar">\r
  19                         <param name="file" value="plantfdx.fa">\r
  20                         <param name="annotations" value="plantfdx.annotations">\r
  21                         <param name="features" value="plantfdx.features">\r
  22                         <param name="embedded" value="true">\r
  23                         <param name="userDefinedColour"\r
  24                                 value="C=yellow; R,K,H=FF5555; D,E=5555FF">\r
  25                         <param name="showFullId" value="false">\r
  26                         <param name="RGB" value="F2F2FF">\r
  27                         <param name="linkLabel_1" value="SRS">\r
  28                         <param name="linkUrl_1"\r
  29                                 value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">\r
  30                         <param name="linkLabel_2" value="Uniprot">\r
  31                         <param name="linkUrl_2"\r
  32                                 value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">\r
  33                         <param name="APPLICATION_URL"\r
  34                                 value="http://www.jalview.org/services/launchApp">\r
  35                 </applet>\r
  36 </p>\r
  37 </body>\r
  38 </html>\r