examples/groovy/parseproperties.groovy

   1 import jalview.analysis.*;
   2 import jalview.datamodel.*;
   3 import jalview.gui.AlignFrame;
   4 import jalview.gui.AlignViewport;
   5
   6 def af = Jalview.getAlignFrames();
   7 def al = af[0].viewport.alignment;
   8 ParseProperties pp = new ParseProperties(al);
   9 pp.getScoresFromDescription("Score", "ScanPS Raw Score", "([-0-9.+]+)");
  10 def sqs = al.getSequenceAt(0);
  11 def annots = sqs.getAnnotation();
  12
  13