examples/groovy/removeFeaturesByGroup.groovy

   1 import jalview.analysis.*;
   2 import jalview.datamodel.*;
   3 import jalview.gui.AlignFrame;
   4 import jalview.gui.AlignViewport;
   5
   6 def af = Jalview.getAlignFrames();
   7
   8 def todie = "PDBFile"; // about to delete this type of group
   9 for (ala in af)
  10 {
  11         def al = ala.viewport.alignment.getDataset();
  12         if (al!=null)
  13         {
  14                 SequenceI[] seqs = al.getSequencesArray();
  15                 for (sq in seqs)
  16                 {
  17                         if (sq!=null) {
  18                                 SequenceFeature[] sf = sq.getSequenceFeatures();
  19                                 for (sfpos in sf)
  20                                 {
  21                                     if (sfpos!=null && sfpos.getFeatureGroup().equals(todie))
  22                                         {
  23                                                 sq.deleteFeature(sfpos);
  24                                         }
  25                                 }
  26                         }
  27                 }
  28         }
  29 }
  30
  31