examples/includes/header_jv.html

   1 <!--
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
   3  * Copyright (C) 2015 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  * The Jalview Authors are detailed in the 'AUTHORS' file.
  18 -->
  19
  20
  21 <body
  22         class="html not-front not-logged-in page-node page-node- page-node-18 node-type-basic-page context-about">
  23         <div id="skip-link">
  24                 <a href="#main-content" class="element-invisible element-focusable">Skip
  25                         to main content</a>
  26         </div>
  27         <div class="page clearfix" id="page">
  28                 <header id="section-header" class="section section-header">
  29                 <div id="zone-branding-wrapper"
  30                         class="zone-wrapper zone-branding-wrapper clearfix">
  31                         <div id="zone-branding"
  32                                 class="zone zone-branding clearfix container-12">
  33                                 <div class="grid-6 region region-branding" id="region-branding">
  34                                         <div class="region-inner region-branding-inner">
  35                                                 <div
  36                                                         class="block block-views block-main-logo-block block-views-main-logo-block odd block-without-title"
  37                                                         id="block-views-main-logo-block">
  38                                                         <div class="block-inner clearfix">
  39                                                                 <div class="content clearfix">
  40                                                                         <div
  41                                                                                 class="view view-main-logo view-id-main_logo view-display-id-block view-dom-id-1828f18ab2b5b41781dad3bdfec6156b">
  42                                                                                 <div class="view-content">
  43                                                                                         <div class="item-list">
  44                                                                                                 <ul>
  45                                                                                                         <li
  46                                                                                                                 class="views-row views-row-1 views-row-odd views-row-first views-row-last">
  47                                                                                                                 <div class="views-field views-field-field-logo-image">
  48                                                                                                                         <div class="field-content">
  49                                                                                                                                 <a href="http://www.jalview.org/"><img
  50                                                                                                                                         class="adaptive-image" typeof="foaf:Image"
  51                                                                                                                                         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/styles/adaptive/adaptive-image/public/jalviewHome_0.jpg?itok=xoZsVtTd"
  52                                                                                                                                         alt="" /></a>
  53                                                                                                                         </div>
  54                                                                                                                 </div>
  55                                                                                                         </li>
  56                                                                                                 </ul>
  57                                                                                         </div>
  58                                                                                 </div>
  59                                                                         </div>
  60                                                                 </div>
  61                                                         </div>
  62                                                 </div>
  63                                         </div>
  64                                 </div>
  65                                 <div class="grid-6 region region-launch-buttons"
  66                                         id="region-launch-buttons">
  67                                         <div class="region-inner region-launch-buttons-inner">
  68                                                 <div
  69                                                         class="block block-views block-launch-buttons-block block-views-launch-buttons-block odd block-without-title"
  70                                                         id="block-views-launch-buttons-block">
  71                                                         <div class="block-inner clearfix">
  72                                                                 <div class="content clearfix">
  73                                                                         <div
  74                                                                                 class="view view-launch-buttons view-id-launch_buttons view-display-id-block view-dom-id-be0b33b57f9a461aaaf77cdeab66e60c">
  75                                                                                 <div class="view-content">
  76                                                                                         <div class="item-list">
  77                                                                                                 <ul>
  78                                                                                                         <li
  79                                                                                                                 class="views-row views-row-1 views-row-odd views-row-first">
  80                                                                                                                 <div class="views-field views-field-field-button-image">
  81                                                                                                                         <div class="field-content">
  82                                                                                                                                 <a href="http://www.jalview.org/webstart/jalview.jnlp"><img
  83                                                                                                                                         typeof="foaf:Image"
  84                                                                                                                                         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/desk.jpg"
  85                                                                                                                                         width="250" height="40" alt="" /></a>
  86                                                                                                                         </div>
  87                                                                                                                 </div>
  88                                                                                                         </li>
  89                                                                                                         <li
  90                                                                                                                 class="views-row views-row-2 views-row-even views-row-last">
  91                                                                                                                 <div class="views-field views-field-field-button-image">
  92                                                                                                                         <div class="field-content">
  93                                                                                                                                 <a href="http://www.jalview.org/examples/applets.html"><img
  94                                                                                                                                         typeof="foaf:Image"
  95                                                                                                                                         src="http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/applet.jpg"
  96                                                                                                                                         width="250" height="40" alt="" /></a>
  97                                                                                                                         </div>
  98                                                                                                                 </div>
  99                                                                                                         </li>
 100                                                                                                 </ul>
 101                                                                                         </div>
 102                                                                                 </div>
 103                                                                         </div>
 104                                                                 </div>
 105                                                         </div>
 106                                                 </div>
 107                                         </div>
 108                                 </div>
 109                         </div>
 110                 </div>
 111                 <div id="zone-menu-wrapper"
 112                         class="zone-wrapper zone-menu-wrapper clearfix">
 113                         <div id="zone-menu" class="zone zone-menu clearfix container-12">
 114                                 <div class="grid-12 region region-menu" id="region-menu">
 115                                         <div class="region-inner region-menu-inner">
 116                                                 <section
 117                                                         class="block block-nice-menus block-1 block-nice-menus-1 odd"
 118                                                         id="block-nice-menus-1">
 119                                                 <div class="block-inner clearfix">
 120                                                         <h2 class="block-title">
 121                                                                 <span class="nice-menu-hide-title">Main menu</span>
 122                                                         </h2>
 123                                                         <div class="content clearfix">
 124                                                                 <ul class="nice-menu nice-menu-down" id="nice-menu-1">
 125                                                                         <li class="menu-346 menu-path-front  first   odd  "><a
 126                                                                                 href="/" title="">Home</a></li>
 127                                                                         <li
 128                                                                                 class="menu-355 menuparent  menu-path-node-18 active-trail   even  "><a
 129                                                                                 href="/About">About</a>
 130                                                                                 <ul>
 131                                                                                         <li class="menu-356 menu-path-node-19  first   odd  "><a
 132                                                                                                 href="/about/citation">Publications</a></li>
 133                                                                                         <li class="menu-357 menu-path-node-20   even  "><a
 134                                                                                                 href="/about/credits">Credits</a></li>
 135                                                                                         <li class="menu-494 menu-path-node-310   odd   last "><a
 136                                                                                                 href="/about/jalview-scientific-advisory-committee">Advisory
 137                                                                                                         Committee</a></li>
 138                                                                                 </ul></li>
 139                                                                         <li class="menu-437 menuparent  menu-path-node-340   odd  "><a
 140                                                                                 href="/Help" class="help-colour-scheme">Help</a>
 141                                                                                 <ul>
 142                                                                                         <li class="menu-579 menu-path-node-576  first   odd  "><a
 143                                                                                                 href="/Help/Getting-Started"
 144                                                                                                 title="Getting Starting with jalview">Getting Started</a></li>
 145                                                                                         <li class="menu-511 menu-path-faq   even  "><a
 146                                                                                                 href="/faq">FAQ</a></li>
 147                                                                                         <li class="menu-513 menu-path-node-2   odd  "><a
 148                                                                                                 href="/about/documentation">Documentation</a></li>
 149                                                                                         <li
 150                                                                                                 class="menu-514 menu-path-jalvieworg-mailman-listinfo-jalview-discuss   even  "><a
 151                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
 152                                                                                                 class="new-window" target="_blank">Discussion Mailing
 153                                                                                                         List</a></li>
 154                                                                                         <li class="menu-773 menu-path-node-618   odd   last "><a
 155                                                                                                 href="/Help/About-Jalview" title="About Jalview">Other
 156                                                                                                         Resources</a></li>
 157                                                                                 </ul></li>
 158                                                                         <li class="menu-363 menuparent  menu-path-node-25   even  "><a
 159                                                                                 href="/community" class="community">Community</a>
 160                                                                                 <ul>
 161                                                                                         <li
 162                                                                                                 class="menu-364 menu-path-jalvieworg-mailman-listinfo-jalview-announce  first   odd  "><a
 163                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-announce"
 164                                                                                                 class="new-window" target="_blank">News Mailing List</a></li>
 165                                                                                         <li
 166                                                                                                 class="menu-365 menu-path-jalvieworg-mailman-listinfo-jalview-discuss   even  "><a
 167                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
 168                                                                                                 class="new-window" target="_blank">Discussion Mailing
 169                                                                                                         List</a></li>
 170                                                                                         <li class="menu-441 menu-path-community-links   odd  "><a
 171                                                                                                 href="/community/links">Links</a></li>
 172                                                                                         <li
 173                                                                                                 class="menu-457 menu-path-community-community-news   even   last "><a
 174                                                                                                 href="/community/community-news">Community News</a></li>
 175                                                                                 </ul></li>
 176                                                                         <li class="menu-366 menuparent  menu-path-node-26   odd  "><a
 177                                                                                 href="/development" class="development">Development</a>
 178                                                                                 <ul>
 179                                                                                         <li
 180                                                                                                 class="menu-436 menu-path-issuesjalvieworg-secure-Dashboardjspa  first   odd  "><a
 181                                                                                                 href="http://issues.jalview.org/secure/Dashboard.jspa"
 182                                                                                                 name="new-window" class="new-window" target="_blank">Jalview
 183                                                                                                         Bug Tracker</a></li>
 184                                                                                         <li class="menu-367 menu-path-node-27   even  "><a
 185                                                                                                 href="/development/development-builds">Development
 186                                                                                                         Version</a></li>
 187                                                                                         <li
 188                                                                                                 class="menu-453 menu-path-sourcejalvieworg-gitweb-pjalviewgit;asummary   odd  "><a
 189                                                                                                 href="http://source.jalview.org/gitweb/?p=jalview.git;a=summary"
 190                                                                                                 class="new-window" target="_blank">Jalview Git Web</a></li>
 191                                                                                         <li class="menu-512 menu-path-node-341   even  "><a
 192                                                                                                 href="/development/Version-Archive">Version Archive</a></li>
 193                                                                                         <li
 194                                                                                                 class="menu-462 menu-path-development-release-history   odd  "><a
 195                                                                                                 href="/development/release-history">Release History</a></li>
 196                                                                                         <li
 197                                                                                                 class="menu-456 menu-path-development-development-news   even   last "><a
 198                                                                                                 href="/development/development-news">Development News</a></li>
 199                                                                                 </ul></li>
 200                                                                         <li class="menu-369 menuparent  menu-path-node-29   even  "><a
 201                                                                                 href="/training" class="training">Training</a>
 202                                                                                 <ul>
 203                                                                                         <li
 204                                                                                                 class="menu-440 menu-path-training-training-courses  first   odd  "><a
 205                                                                                                 href="/training/training-courses">Training Courses</a></li>
 206                                                                                         <li class="menu-1374 menu-path-node-654   even  "><a
 207                                                                                                 href="/training/Training-Videos"
 208                                                                                                 title="Jalview Online Training Videos">Training Videos</a></li>
 209                                                                                         <li class="menu-458 menu-path-training-training-news   odd  "><a
 210                                                                                                 href="/training/training-news">Training News</a></li>
 211                                                                                         <li class="menu-610 menu-path-node-606   even   last "><a
 212                                                                                                 href="/ISMB-2014-Presentation">Jalview &amp; JABA Slides</a></li>
 213                                                                                 </ul></li>
 214                                                                         <li class="menu-358 menu-path-node-21   odd   last "><a
 215                                                                                 href="/Download" class="download-right">Download</a></li>
 216                                                                 </ul>
 217                                                         </div>
 218                                                 </div>
 219                                                 </section>
 220                                         </div>
 221                                 </div>
 222                         </div>
 223                 </div>
 224                 <div id="zone-header-wrapper"
 225                         class="zone-wrapper zone-header-wrapper clearfix">
 226                         <div id="zone-header" class="zone zone-header clearfix container-12">
 227                                 <div class="grid-12 region region-header-first"
 228                                         id="region-header-first">
 229                                         <div class="region-inner region-header-first-inner">
 230                                                 <div
 231                                                         class="block block-menu-block primary-nav block-3 block-menu-block-3 odd block-without-title"
 232                                                         id="block-menu-block-3">
 233                                                         <div class="block-inner clearfix">
 234
 235                                                                 <div class="content clearfix">
 236                                                                         <div
 237                                                                                 class="menu-block-wrapper menu-block-3 menu-name-main-menu parent-mlid-0 menu-level-1">
 238                                                                                 <ul class="menu">
 239                                                                                         <li class="first leaf menu-mlid-346"><a href="/"
 240                                                                                                 title="">Home</a></li>
 241                                                                                         <li class="expanded active-trail active menu-mlid-355"><a
 242                                                                                                 href="/About" class="active-trail active">About</a>
 243                                                                                                 <ul class="menu">
 244                                                                                                         <li class="first leaf menu-mlid-356"><a
 245                                                                                                                 href="/about/citation">Publications</a></li>
 246                                                                                                         <li class="leaf menu-mlid-357"><a
 247                                                                                                                 href="/about/credits">Credits</a></li>
 248                                                                                                         <li class="last leaf menu-mlid-494"><a
 249                                                                                                                 href="/about/jalview-scientific-advisory-committee">Advisory
 250                                                                                                                         Committee</a></li>
 251                                                                                                 </ul></li>
 252                                                                                         <li class="expanded menu-mlid-437"><a href="/Help"
 253                                                                                                 class="help-colour-scheme">Help</a>
 254                                                                                                 <ul class="menu">
 255                                                                                                         <li class="first leaf menu-mlid-579"><a
 256                                                                                                                 href="/Help/Getting-Started"
 257                                                                                                                 title="Getting Starting with jalview">Getting Started</a></li>
 258                                                                                                         <li class="leaf menu-mlid-511"><a href="/faq">FAQ</a></li>
 259                                                                                                         <li class="leaf menu-mlid-513"><a
 260                                                                                                                 href="/about/documentation">Documentation</a></li>
 261                                                                                                         <li class="leaf menu-mlid-514"><a
 262                                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
 263                                                                                                                 class="new-window" target="_blank">Discussion Mailing
 264                                                                                                                         List</a></li>
 265                                                                                                         <li class="last leaf menu-mlid-773"><a
 266                                                                                                                 href="/Help/About-Jalview" title="About Jalview">Other
 267                                                                                                                         Resources</a></li>
 268                                                                                                 </ul></li>
 269                                                                                         <li class="expanded menu-mlid-363"><a href="/community"
 270                                                                                                 class="community">Community</a>
 271                                                                                                 <ul class="menu">
 272                                                                                                         <li class="first leaf menu-mlid-364"><a
 273                                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-announce"
 274                                                                                                                 class="new-window" target="_blank">News Mailing List</a></li>
 275                                                                                                         <li class="leaf menu-mlid-365"><a
 276                                                                                                                 href="http://www.jalview.org/mailman/listinfo/jalview-discuss"
 277                                                                                                                 class="new-window" target="_blank">Discussion Mailing
 278                                                                                                                         List</a></li>
 279                                                                                                         <li class="leaf menu-mlid-441"><a
 280                                                                                                                 href="/community/links">Links</a></li>
 281                                                                                                         <li class="last leaf menu-mlid-457"><a
 282                                                                                                                 href="/community/community-news">Community News</a></li>
 283                                                                                                 </ul></li>
 284                                                                                         <li class="expanded menu-mlid-366"><a
 285                                                                                                 href="/development" class="development">Development</a>
 286                                                                                                 <ul class="menu">
 287                                                                                                         <li class="first leaf menu-mlid-436"><a
 288                                                                                                                 href="http://issues.jalview.org/secure/Dashboard.jspa"
 289                                                                                                                 name="new-window" class="new-window" target="_blank">Jalview
 290                                                                                                                         Bug Tracker</a></li>
 291                                                                                                         <li class="leaf menu-mlid-367"><a
 292                                                                                                                 href="/development/development-builds">Development
 293                                                                                                                         Version</a></li>
 294                                                                                                         <li class="leaf menu-mlid-453"><a
 295                                                                                                                 href="http://source.jalview.org/gitweb/?p=jalview.git;a=summary"
 296                                                                                                                 class="new-window" target="_blank">Jalview Git Web</a></li>
 297                                                                                                         <li class="leaf menu-mlid-512"><a
 298                                                                                                                 href="/development/Version-Archive">Version Archive</a></li>
 299                                                                                                         <li class="leaf menu-mlid-462"><a
 300                                                                                                                 href="/development/release-history">Release History</a></li>
 301                                                                                                         <li class="last leaf menu-mlid-456"><a
 302                                                                                                                 href="/development/development-news">Development News</a></li>
 303                                                                                                 </ul></li>
 304                                                                                         <li class="expanded menu-mlid-369"><a href="/training"
 305                                                                                                 class="training">Training</a>
 306                                                                                                 <ul class="menu">
 307                                                                                                         <li class="first leaf menu-mlid-440"><a
 308                                                                                                                 href="/training/training-courses">Training Courses</a></li>
 309                                                                                                         <li class="leaf menu-mlid-1374"><a
 310                                                                                                                 href="/training/Training-Videos"
 311                                                                                                                 title="Jalview Online Training Videos">Training Videos</a></li>
 312                                                                                                         <li class="leaf menu-mlid-458"><a
 313                                                                                                                 href="/training/training-news">Training News</a></li>
 314                                                                                                         <li class="last leaf menu-mlid-610"><a
 315                                                                                                                 href="/ISMB-2014-Presentation">Jalview &amp; JABA
 316                                                                                                                         Slides</a></li>
 317                                                                                                 </ul></li>
 318                                                                                         <li class="last expanded menu-mlid-358"><a
 319                                                                                                 href="/Download" class="download-right">Download</a></li>
 320                                                                                 </ul>
 321                                                                         </div>
 322                                                                 </div>
 323                                                         </div>
 324                                                 </div>
 325                                         </div>
 326                                 </div>
 327                                 <div class="grid-6 region region-header-second"
 328                                         id="region-header-second">
 329                                         <div class="region-inner region-header-second-inner">
 330                                                 <div
 331                                                         class="block block-delta-blocks block-breadcrumb block-delta-blocks-breadcrumb odd block-without-title"
 332                                                         id="block-delta-blocks-breadcrumb">
 333                                                         <div class="block-inner clearfix">
 334
 335                                                                 <div class="content clearfix">
 336                                                                         <div id="breadcrumb" class="clearfix">
 337                                                                                 <ul class="breadcrumb">
 338                                                                                         <li class="depth-1 odd first"><a href="/">Home</a></li>
 339                                                                                         <li class="depth-2 even last"><a href="/About"
 340                                                                                                 class="active">About</a></li>
 341                                                                                 </ul>
 342                                                                         </div>
 343                                                                 </div>
 344                                                         </div>
 345                                                 </div>
 346                                         </div>
 347                                 </div>
 348                         </div>
 349                 </div>
 350                 </header>
 351
 352
 353                 <form name="custom_form" id="custom_form" action="jalview_examples.php" method="post">
 354                 <input type="hidden" name="target" id="target" value="APPLETS"><br>
 355                 </form>