JAL-629 Tests for FileUtils. Tidying counter substitutions. Fixing PAE opening.
[jalview.git] / examples / test_fab41.result / argfile.txt
1 --nonews
2 --nosplash
3 --substitutions
4 --open={argfiledirname}/sample.a2m
5 --colour=gecos:flower
6 --structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
7 --paematrix="[label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json"
8 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
9 --paematrix="[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json"
10 --structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
11 --paematrix="[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json"
12 --structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
13 --paematrix="[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json"
14 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
15 --paematrix="[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json"
16 --image={dirname}/{basename}.html