JAL-3992 fix path
[jalview.git] / examples / testdata / test.pileup
1 PileUp
2
3    MSF: 157   Type: P    Check:  1935   ..
4
5
6  Name: FER_CAPAA/1-97 oo  Len:  157  Check:  5701  Weight:  1.00
7  Name: FER_CAPAN/1-144 oo  Len:  157  Check:  8823  Weight:  1.00
8  Name: FER1_SOLLC/1-144 oo  Len:  157  Check:  41  Weight:  1.00
9  Name: Q93XJ9_SOLTU/1-144 oo  Len:  157  Check:  466  Weight:  1.00
10  Name: FER1_PEA/1-149 oo  Len:  157  Check:  5889  Weight:  1.00
11  Name: Q7XA98_TRIPR/1-152 oo  Len:  157  Check:  1438  Weight:  1.00
12  Name: FER1_MESCR/1-148 oo  Len:  157  Check:  3943  Weight:  1.00
13  Name: FER1_SPIOL/1-147 oo  Len:  157  Check:  2139  Weight:  1.00
14  Name: FER3_RAPSA/1-96 oo  Len:  157  Check:  7694  Weight:  1.00
15  Name: FER1_ARATH/1-148 oo  Len:  157  Check:  6163  Weight:  1.00
16  Name: FER_BRANA/1-96 oo  Len:  157  Check:  6628  Weight:  1.00
17  Name: FER2_ARATH/1-148 oo  Len:  157  Check:  7866  Weight:  1.00
18  Name: Q93Z60_ARATH/1-118 oo  Len:  157  Check:  3003  Weight:  1.00
19  Name: FER1_MAIZE/1-150 oo  Len:  157  Check:  4097  Weight:  1.00
20  Name: O80429_MAIZE/1-140 oo  Len:  157  Check:  1696  Weight:  1.00
21  Name: 1A70|/1-97 oo  Len:  156  Check:  6348  Weight:  1.00
22
23
24 //
25
26 FER_CAPAA/1-97 ---------- ---------- ---------- ---------- ----------
27 FER_CAPAN/1-144 MA------SV SATMISTSFM PRKPAVTSL- KPIPNVGE-- ALFGLKS-A-
28 FER1_SOLLC/1-144 MA------SI SGTMISTSFL PRKPAVTSL- KAISNVGE-- ALFGLKS-G-
29 Q93XJ9_SOLTU/1-144 MA------SI SGTMISTSFL PRKPVVTSL- KAISNVGE-- ALFGLKS-G-
30 FER1_PEA/1-149 MATT---PAL YGTAVSTSFL RTQPMPMSV- TTTKAFSN-- GFLGLKT-SL
31 Q7XA98_TRIPR/1-152 MATT---PAL YGTAVSTSFM RRQPVPMSV- ATTTTTKAFP SGFGLKSVST
32 FER1_MESCR/1-148 MAAT--TAAL SGATMSTAFA PK--TPPMTA ALPTNVGR-- ALFGLKS-SA
33 FER1_SPIOL/1-147 MAAT--TTTM MG--MATTFV PKPQAPPMMA ALPSNTGR-- SLFGLKT-GS
34 FER3_RAPSA/1-96 ---------- ---------- ---------- ---------- ----------
35 FER1_ARATH/1-148 MAST----AL SSAIVGTSFI RRSPAPISLR SLPSANTQ-- SLFGLKS-GT
36 FER_BRANA/1-96 ---------- ---------- ---------- ---------- ----------
37 FER2_ARATH/1-148 MAST----AL SSAIVSTSFL RRQQTPISLR SLPFANTQ-- SLFGLKS-ST
38 Q93Z60_ARATH/1-118 MAST----AL SSAIVSTSFL RRQQTPISLR SLPFANTQ-- SLFGLKS-ST
39 FER1_MAIZE/1-150 MATVLGSPRA PAFFFSSSSL RAAPAPTAV- -ALPAAKV-- GIMGRSA-SS
40 O80429_MAIZE/1-140 MAAT------ ---ALSMSIL R---APPPCF SSPLRLRV-- AVAKPLA-AP
41 1A70|/1-97   ---------- ---------- ---------- ---------- ----------
42
43 FER_CAPAA/1-97 ---------A SYKVKLITPD GPIEFDCPDD VYILDQAEEA GHDLPYSCRA
44 FER_CAPAN/1-144 -NGGKVTCMA SYKVKLITPD GPIEFDCPDN VYILDQAEEA GHDLPYSCRA
45 FER1_SOLLC/1-144 -RNGRITCMA SYKVKLITPE GPIEFECPDD VYILDQAEEE GHDLPYSCRA
46 Q93XJ9_SOLTU/1-144 -RNGRITCMA SYKVKLITPD GPIEFECPDD VYILDQAEEE GHDLPYSCRA
47 FER1_PEA/1-149 KRGDLAVAMA SYKVKLVTPD GTQEFECPSD VYILDHAEEV GIDLPYSCRA
48 Q7XA98_TRIPR/1-152 KRGDLAVAMA TYKVKLITPE GPQEFDCPDD VYILDHAEEV GIELPYSCRA
49 FER1_MESCR/1-148 SR-GRVTAMA AYKVTLVTPE GKQELECPDD VYILDAAEEA GIDLPYSCRA
50 FER1_SPIOL/1-147 R--GGRMTMA AYKVTLVTPT GNVEFQCPDD VYILDAAEEE GIDLPYSCRA
51 FER3_RAPSA/1-96 ---------A TYKVKFITPE GEQEVECDDD VYVLDAAEEA GIDLPYSCRA
52 FER1_ARATH/1-148 ARGGRVTAMA TYKVKFITPE GELEVECDDD VYVLDAAEEA GIDLPYSCRA
53 FER_BRANA/1-96 ---------A TYKVKFITPE GEQEVECDDD VYVLDAAEEA GIDLPYSCRA
54 FER2_ARATH/1-148 ARGGRVTAMA TYKVKFITPE GEQEVECEED VYVLDAAEEA GLDLPYSCRA
55 Q93Z60_ARATH/1-118 ARGGRVTAMA TYKVKFITPE GEQEVECEED VYVLDAAEEA GLDLPYSCRA
56 FER1_MAIZE/1-150 RR--RLRAQA TYNVKLITPE GEVELQVPDD VYILDQAEED GIDLPYSCRA
57 O80429_MAIZE/1-140 MRRQLLRAQA TYNVKLITPE GEVELQVPDD VYILDFAEEE GIDLPFSCRA
58 1A70|/1-97   ---------A AYKVTLVTPT GNVEFQCPDD VYILDAAEEE GIDLPYSCRA
59
60 FER_CAPAA/1-97 GSCSSCAGKI AGGAVDQTDG NFLDDDQLEE GWVLTCVAYP QSDVTIETHK
61 FER_CAPAN/1-144 GSCSSCAGKI AGGAVDQTDG NFLDDDQLEE GWVLTCVAYP QSDVTIETHK
62 FER1_SOLLC/1-144 GSCSSCAGKV TAGSVDQSDG NFLDEDQEAA GFVLTCVAYP KGDVTIETHK
63 Q93XJ9_SOLTU/1-144 GSCSSCAGKV TAGTVDQSDG KFLDDDQEAA GFVLTCVAYP KCDVTIETHK
64 FER1_PEA/1-149 GSCSSCAGKV VGGEVDQSDG SFLDDEQIEA GFVLTCVAYP TSDVVIETHK
65 Q7XA98_TRIPR/1-152 GSCSSCAGKV VNGNVNQEDG SFLDDEQIEG GWVLTCVAFP TSDVTIETHK
66 FER1_MESCR/1-148 GSCSSCAGKV TSGSVNQDDG SFLDDDQIKE GWVLTCVAYP TGDVTIETHK
67 FER1_SPIOL/1-147 GSCSSCAGKL KTGSLNQDDQ SFLDDDQIDE GWVLTCAAYP VSDVTIETHK
68 FER3_RAPSA/1-96 GSCSSCAGKV VSGSVDQSDQ SFLDDDQIAE GFVLTCAAYP TSDVTIETHR
69 FER1_ARATH/1-148 GSCSSCAGKV VSGSVDQSDQ SFLDDEQIGE GFVLTCAAYP TSDVTIETHK
70 FER_BRANA/1-96 GSCSSCAGKV VSGFVDQSDE SFLDDDQIAE GFVLTCAAYP TSDVTIETHK
71 FER2_ARATH/1-148 GSCSSCAGKV VSGSIDQSDQ SFLDDEQMSE GYVLTCVAYP TSDVVIETHK
72 Q93Z60_ARATH/1-118 GSCSSCAGKV VSGSIDQSDQ SFLDD----- ---------- ----------
73 FER1_MAIZE/1-150 GSCSSCAGKV VSGSVDQSDQ SYLDDGQIAD GWVLTCHAYP TSDVVIETHK
74 O80429_MAIZE/1-140 GSCSSCAGKV VSGSVDQSDQ SFLNDNQVAD GWVLTCAAYP TSDVVIETHK
75 1A70|/1-97   GSCSSCAGKL KTGSLNQDDQ SFLDDDQIDE GWVLTCAAYP VSDVTIETHK
76
77 FER_CAPAA/1-97 EAELVG-
78 FER_CAPAN/1-144 EAELVG-
79 FER1_SOLLC/1-144 EEELTA-
80 Q93XJ9_SOLTU/1-144 EEELTA-
81 FER1_PEA/1-149 EEDLTA-
82 Q7XA98_TRIPR/1-152 EEELTA-
83 FER1_MESCR/1-148 EEELTA-
84 FER1_SPIOL/1-147 EEELTA-
85 FER3_RAPSA/1-96 EEDMV--
86 FER1_ARATH/1-148 EEDIV--
87 FER_BRANA/1-96 EEELV--
88 FER2_ARATH/1-148 EEAIM--
89 Q93Z60_ARATH/1-118 -------
90 FER1_MAIZE/1-150 EEELTGA
91 O80429_MAIZE/1-140 EDDLL--
92 1A70|/1-97   KEELTA
93