2 # Created: Wed Jul 08 18:48:01 BST 2015
4 NO_GRAPH Test Annotation Test Annotation ||||H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|||||||||||E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|E,β|||||||||||||||||||||||||||||||||||||||||||||||||E,β|E,β|E,β|E,β|E,β|||||||||||||||H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|H,α|||||||||||||||||E,β|E,β||||
5 BAR_GRAPH Conservation Conservation of total alignment less than 25% gaps 1.0,1,hydrophobic ,[5d1500]|3.0,3,small hydrophobic tiny ,[7d3f00]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|1.0,1,hydrophobic ,[5d1500]|2.0,2,small tiny ,[6d2a00]|0.0,0,[4d0000]|1.0,1,small ,[5d1500]|0.0,0,[4d0000]|1.0,1,hydrophobic ,[5d1500]|0.0,0,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,0,[4d0000]|1.0,1,small ,[5d1500]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|2.0,2,small tiny ,[6d2a00]|1.0,1,hydrophobic ,[5d1500]|1.0,1,hydrophobic ,[5d1500]|1.0,1,hydrophobic ,[5d1500]|0.0,0,[4d0000]|0.0,0,[4d0000]|1.0,1,small ,[5d1500]|0.0,-,[4d0000]|2.0,2,small tiny ,[6d2a00]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|1.0,1,small ,[5d1500]|0.0,0,[4d0000]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|7.0,7,small !aromatic !negative !charged !positive !aliphatic !proline,[be9200]|11.0,*,hydrophobic aromatic polar !tiny !negative !charged !small !positive !aliphatic !proline,[ffe600]|6.0,6,polar !tiny !aromatic !negative !aliphatic !proline,[ae7d00]|11.0,*,aliphatic small hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[ffe600]|6.0,6,polar !tiny !aromatic !negative !aliphatic !proline,[ae7d00]|8.0,8,hydrophobic !tiny !polar !negative !charged !small !positive !proline,[cea700]|9.0,9,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[dfbc00]|11.0,*,small polar !tiny !aromatic !hydrophobic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,proline small !tiny !polar !aromatic !hydrophobic !negative !charged !positive !aliphatic,[ffe600]|7.0,7,polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[be9200]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|3.0,3, !tiny !aromatic !aliphatic,[7d3f00]|6.0,6, !tiny !aromatic !negative !charged !positive !proline,[ae7d00]|11.0,*,charged negative polar !tiny !aromatic !hydrophobic !small !positive !aliphatic !proline,[ffe600]|7.0,7,hydrophobic !tiny !polar !negative !charged !positive !proline,[be9200]|7.0,7,polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[be9200]|9.0,9,small hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[dfbc00]|5.0,5, !tiny !aromatic !hydrophobic !positive !aliphatic,[9e6800]|6.0,6,polar !aromatic !hydrophobic !positive !aliphatic !proline,[ae7d00]|8.0,8,small polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[cea700]|11.0,*,aliphatic small hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[ffe600]|11.0,*,hydrophobic aromatic polar !tiny !negative !charged !small !positive !aliphatic !proline,[ffe600]|9.0,9,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[dfbc00]|11.0,*,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !small !positive !proline,[ffe600]|11.0,*,small charged negative polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[ffe600]|3.0,3, !negative !aliphatic !proline,[7d3f00]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,charged negative polar !tiny !aromatic !hydrophobic !small !positive !aliphatic !proline,[ffe600]|11.0,*,charged negative polar !tiny !aromatic !hydrophobic !small !positive !aliphatic !proline,[ffe600]|3.0,3, !aromatic !positive !proline,[7d3f00]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|5.0,5,hydrophobic !tiny !negative !small !proline,[9e6800]|9.0,9,charged negative polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[dfbc00]|11.0,*,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !small !positive !proline,[ffe600]|11.0,*,proline small !tiny !polar !aromatic !hydrophobic !negative !charged !positive !aliphatic,[ffe600]|9.0,9,hydrophobic aromatic !tiny !negative !charged !small !positive !aliphatic !proline,[dfbc00]|11.0,*,small polar tiny !aromatic !hydrophobic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic !tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,positive charged polar !tiny !aromatic !hydrophobic !negative !small !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small polar tiny !aromatic !hydrophobic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic !tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small polar tiny !aromatic !hydrophobic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small polar tiny !aromatic !hydrophobic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic !tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|11.0,*,positive charged hydrophobic polar !tiny !aromatic !negative !small !aliphatic !proline,[ffe600]|9.0,9,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[dfbc00]|3.0,3, !aromatic !negative !proline,[7d3f00]|7.0,7,small !aromatic !negative !charged !positive !aliphatic !proline,[be9200]|11.0,*,small hydrophobic tiny !polar !aromatic !negative !charged !positive !aliphatic !proline,[ffe600]|3.0,3, !positive !aliphatic !proline,[7d3f00]|9.0,9,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !positive !proline,[dfbc00]|8.0,8,small polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[cea700]|11.0,*,polar !tiny !aromatic !hydrophobic !negative !charged !small !positive !aliphatic !proline,[ffe600]|6.0,6,polar !aromatic !hydrophobic !positive !aliphatic !proline,[ae7d00]|11.0,*,small charged negative polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[ffe600]|4.0,4, !aromatic !positive !aliphatic !proline,[8d5300]|5.0,5,polar !aromatic !negative !aliphatic !proline,[9e6800]|9.0,9,hydrophobic aromatic !tiny !negative !charged !small !positive !aliphatic !proline,[dfbc00]|11.0,*,aliphatic hydrophobic !tiny !polar !aromatic !negative !charged !small !positive !proline,[ffe600]|8.0,8,small polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[cea700]|9.0,9,charged negative polar !tiny !aromatic !hydrophobic !positive !aliphatic !proline,[dfbc00]|0.0,0,[4d0000]|1.0,1,polar ,[5d1500]|0.0,0,[4d0000]|0.0,0,[4d0000]|0.0,0,[4d0000]|3.0,3,small hydrophobic tiny ,[7d3f00]|2.0,2,hydrophobic aromatic ,[6d2a00]|3.0,3,aliphatic small hydrophobic ,[7d3f00]|2.0,2,aliphatic hydrophobic ,[6d2a00]|2.0,2,small polar ,[6d2a00]|2.0,2,small hydrophobic ,[6d2a00]|1.0,1,hydrophobic ,[5d1500]|3.0,3,small hydrophobic tiny ,[7d3f00]|2.0,2,hydrophobic aromatic ,[6d2a00]|2.0,2,proline small ,[6d2a00]|0.0,0,[4d0000]|1.0,1,small ,[5d1500]|4.0,4,small charged negative polar ,[8d5300]|3.0,3,aliphatic small hydrophobic ,[7d3f00]|1.0,1,small ,[5d1500]|2.0,2,aliphatic hydrophobic ,[6d2a00]|3.0,3,charged negative polar ,[7d3f00]|2.0,2,small polar ,[6d2a00]|5.0,5,positive charged hydrophobic aromatic polar ,[9e6800]|3.0,3,positive charged polar ,[7d3f00]|3.0,3,charged negative polar ,[7d3f00]|0.0,0,[4d0000]|0.0,0,[4d0000]|1.0,1,hydrophobic ,[5d1500]|0.0,0,[4d0000]|0.0,-,[4d0000]|0.0,-,[4d0000]|
6 BAR_GRAPH Quality Alignment Quality based on Blosum62 scores 29.151815,29.151815,[cba200]|30.574812,30.574812,[d1aa00]|14.400199,14.400199,[8b5000]|16.93248,16.93248,[965e00]|2.1220763,2.1220763,[560c00]|2.2049963,2.2049963,[560c00]|3.647952,3.647952,[5c1400]|4.814642,4.814642,[611b00]|18.351393,18.351393,[9c6600]|17.532412,17.532412,[996200]|7.5054855,7.5054855,[6d2a00]|15.490477,15.490477,[905600]|14.241707,14.241707,[8a4f00]|9.905579,9.905579,[773700]|20.354017,20.354017,[a57100]|26.870352,26.870352,[c19600]|24.969187,24.969187,[b98b00]|27.419409,27.419409,[c39900]|15.350427,15.350427,[8f5600]|21.116522,21.116522,[a87600]|9.34032,9.34032,[753400]|14.1895275,14.1895275,[8a4f00]|10.104505,10.104505,[783800]|8.587312,8.587312,[723000]|18.694708,18.694708,[9e6800]|11.420612,11.420612,[7e4000]|6.8467255,6.8467255,[6a2600]|17.449827,17.449827,[986100]|16.825909,16.825909,[955e00]|2.4334474,2.4334474,[570e00]|15.685622,15.685622,[915700]|9.836516,9.836516,[773700]|3.4712791,3.4712791,[5c1300]|4.531816,4.531816,[601900]|7.8744216,7.8744216,[6f2c00]|0.0,0.0,[4d0000]|9.01113,9.01113,[743200]|3.174218,3.174218,[5a1200]|2.0395048,2.0395048,[550b00]|2.1654668,2.1654668,[560c00]|21.517344,21.517344,[aa7800]|15.738462,15.738462,[915800]|14.844854,14.844854,[8d5300]|22.159096,22.159096,[ad7c00]|13.956608,13.956608,[894e00]|20.147892,20.147892,[a47000]|25.067545,25.067545,[b98c00]|2.0943506,2.0943506,[560c00]|20.30842,20.30842,[a57100]|10.254437,10.254437,[793900]|6.5836596,6.5836596,[692500]|19.446732,19.446732,[a16c00]|6.2202287,6.2202287,[672300]|9.796006,9.796006,[773700]|6.0385494,6.0385494,[672200]|13.963727,13.963727,[894e00]|13.838549,13.838549,[884d00]|18.48424,18.48424,[9d6700]|18.302633,18.302633,[9c6600]|41.172745,41.172745,[ffe600]|32.59908,32.59908,[dab600]|41.172745,41.172745,[ffe600]|34.495945,34.495945,[e2c000]|41.172745,41.172745,[ffe600]|33.501804,33.501804,[debb00]|27.034466,27.034466,[c29700]|40.020737,40.020737,[fadf00]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|29.252739,29.252739,[cba300]|41.172745,41.172745,[ffe600]|14.935498,14.935498,[8d5300]|0.88449144,0.88449144,[500500]|41.172745,41.172745,[ffe600]|20.81991,20.81991,[a77400]|31.73346,31.73346,[d6b100]|29.757969,29.757969,[cea600]|16.279755,16.279755,[935b00]|32.647984,32.647984,[dab600]|38.352337,38.352337,[f3d600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|39.6125,39.6125,[f8dd00]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|9.671661,9.671661,[763600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|11.17141,11.17141,[7d3e00]|41.172745,41.172745,[ffe600]|3.2054348,3.2054348,[5a1200]|38.569283,38.569283,[f4d700]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|39.707684,39.707684,[f9dd00]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|41.172745,41.172745,[ffe600]|39.447525,39.447525,[f8dc00]|21.229778,21.229778,[a97600]|27.779364,27.779364,[c59b00]|41.172745,41.172745,[ffe600]|24.149143,24.149143,[b58700]|39.447525,39.447525,[f8dc00]|33.857655,33.857655,[dfbd00]|41.172745,41.172745,[ffe600]|28.69976,28.69976,[c9a000]|41.172745,41.172745,[ffe600]|14.611241,14.611241,[8c5100]|32.346375,32.346375,[d9b400]|39.24055,39.24055,[f7db00]|41.172745,41.172745,[ffe600]|38.352337,38.352337,[f3d600]|38.569283,38.569283,[f4d700]|22.374107,22.374107,[ae7d00]|36.98438,36.98438,[edce00]|12.34415,12.34415,[824500]|11.811655,11.811655,[804200]|14.798897,14.798897,[8d5200]|36.60138,36.60138,[ebcc00]|14.0762415,14.0762415,[8a4e00]|36.817875,36.817875,[eccd00]|36.53897,36.53897,[ebcc00]|37.583706,37.583706,[efd100]|35.536423,35.536423,[e7c600]|18.004925,18.004925,[9b6400]|37.633095,37.633095,[f0d200]|34.738743,34.738743,[e3c200]|36.451622,36.451622,[ebcb00]|19.948801,19.948801,[a36f00]|28.285,28.285,[c79e00]|35.93151,35.93151,[e8c800]|36.817875,36.817875,[eccd00]|26.762383,26.762383,[c19500]|36.37101,36.37101,[eacb00]|36.413998,36.413998,[eacb00]|37.583706,37.583706,[efd100]|36.282784,36.282784,[eaca00]|34.729824,34.729824,[e3c200]|36.413998,36.413998,[eacb00]|24.348654,24.348654,[b68800]|24.349539,24.349539,[b68800]|34.091675,34.091675,[e0be00]|21.114677,21.114677,[a87600]|13.676696,13.676696,[884c00]|2.1107035,2.1107035,[560c00]|
7 BAR_GRAPH Consensus PID 80.0,M,M 80%|80.0,A,A 80%|20.0,+,[AST] 20%|53.333332,T,T 53%|6.6666665,L,L 6%|6.6666665,G,G 6%|13.333333,T,T 13%|20.0,P,P 20%|40.0,A,A 40%|40.0,L,L 40%|46.666668,S,S 46%|40.0,G,G 40%|33.333332,T,T 33%|20.0,+,[AIM] 20%|33.333332,V,V 33%|66.666664,S,S 66%|66.666664,T,T 66%|66.666664,S,S 66%|66.666664,F,F 66%|46.666668,L,L 46%|46.666668,R,R 46%|46.666668,R,R 46%|26.666666,Q,Q 26%|46.666668,P,P 46%|40.0,A,A 40%|60.0,P,P 60%|26.666666,T,T 26%|53.333332,S,S 53%|40.0,L,L 40%|20.0,R,R 20%|26.666666,S,S 26%|33.333332,L,L 33%|40.0,P,P 40%|26.666666,S,S 26%|33.333332,+,[AN] 33%|26.666666,V,V 26%|33.333332,G,G 33%|20.0,+,[EQ] 20%|6.6666665,F,F 6%|6.6666665,P,P 6%|33.333332,+,[AS] 33%|53.333332,L,L 53%|60.0,F,F 60%|73.333336,G,G 73%|66.666664,L,L 66%|66.666664,K,K 66%|53.333332,S,S 53%|6.6666665,V,V 6%|40.0,S,S 40%|26.666666,T,T 26%|20.0,A,A 20%|66.666664,R,R 66%|40.0,G,G 40%|53.333332,G,G 53%|46.666668,R,R 46%|33.333332,V,V 33%|46.666668,T,T 46%|53.333332,A,A 53%|66.666664,M,M 66%|100.0,A,A 100%|53.333332,T,T 53%|100.0,Y,Y 100%|86.666664,K,K 86%|100.0,V,V 100%|86.666664,K,K 86%|66.666664,L,L 66%|80.0,I,I 80%|100.0,T,T 100%|100.0,P,P 100%|66.666664,E,E 66%|100.0,G,G 100%|46.666668,E,E 46%|46.666668,Q,Q 46%|100.0,E,E 100%|46.666668,F,F 46%|60.0,E,E 60%|86.666664,C,C 86%|66.666664,P,P 66%|80.0,D,D 80%|93.333336,D,D 93%|100.0,V,V 100%|100.0,Y,Y 100%|66.666664,I,I 66%|100.0,L,L 100%|100.0,D,D 100%|46.666668,A,A 46%|100.0,A,A 100%|100.0,E,E 100%|100.0,E,E 100%|53.333332,A,A 53%|100.0,G,G 100%|60.0,I,I 60%|93.333336,D,D 93%|100.0,L,L 100%|100.0,P,P 100%|93.333336,Y,Y 93%|100.0,S,S 100%|100.0,C,C 100%|100.0,R,R 100%|100.0,A,A 100%|100.0,G,G 100%|100.0,S,S 100%|100.0,C,C 100%|100.0,S,S 100%|100.0,S,S 100%|100.0,C,C 100%|100.0,A,A 100%|100.0,G,G 100%|100.0,K,K 100%|80.0,V,V 80%|60.0,V,V 60%|53.333332,S,S 53%|100.0,G,G 100%|60.0,S,S 60%|80.0,V,V 80%|80.0,D,D 80%|100.0,Q,Q 100%|66.666664,S,S 66%|100.0,D,D 100%|46.666668,+,[GQ] 46%|73.333336,S,S 73%|93.333336,F,F 93%|100.0,L,L 100%|93.333336,D,D 93%|93.333336,D,D 93%|53.333332,D,D 53%|93.333336,Q,Q 93%|53.333332,I,I 53%|40.0,A,A 40%|53.333332,E,E 53%|93.333336,G,G 93%|46.666668,W,W 46%|93.333336,V,V 93%|93.333336,L,L 93%|93.333336,T,T 93%|93.333336,C,C 93%|53.333332,V,V 53%|93.333336,A,A 93%|86.666664,Y,Y 86%|93.333336,P,P 93%|60.0,T,T 60%|73.333336,S,S 73%|93.333336,D,D 93%|93.333336,V,V 93%|66.666664,T,T 66%|93.333336,I,I 93%|93.333336,E,E 93%|93.333336,T,T 93%|93.333336,H,H 93%|86.666664,K,K 86%|93.333336,E,E 93%|73.333336,E,E 73%|60.0,E,E 60%|73.333336,L,L 73%|46.666668,T,T 46%|40.0,A,A 40%|6.6666665,A,A 6%|
9 SEQUENCE_GROUP JGroup:666531415 14 37 -1 FER_CAPAN FER1_SOLLC Q93XJ9_SOLTU FER1_PEA Q7XA98_TRIPR
10 PROPERTIES JGroup:666531415 colour=Zappo outlineColour=000000 displayBoxes=true displayText=true colourText=false showUnconserved=false
git://source.jalview.org / jalview.git / blob