forester/sh/x_hsp_d2f.sh

   1 re="(.+)_hmmscan$"
   2 for i in *
   3 do
   4     if test -f "$i"
   5     then
   6         if [[ $i =~ $re ]]
   7         then
   8             name=${BASH_REMATCH[1]}
   9             echo $name
  10             ruby /home/zma/git/forester/forester/ruby/evoruby/exe/hsp.rb $i
  11             rc=$?
  12             if [[ $rc != 0 ]]
  13             then
  14                 exit $rc
  15             fi
  16             ruby /home/zma/git/forester/forester/ruby/evoruby/exe/d2f.rb -o ${name}_hmmscan_domain_table
  17             rc=$?
  18             if [[ $rc != 0 ]]
  19             then
  20                 exit $rc
  21             fi
  22         fi
  23     fi
  24 done