help/html/features/wrap.html

   1 <html>
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   3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
   4  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
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  18 -->
  19 <head><title>Wrap Alignment</title></head>
  20
  21 <body>
  22 <p><strong>View&#8594;Wrap alignment </strong></p>
  23 <p>Use this feature to wrap an alignment to the screen width. </p>
  24 <p>All output (HTML, Printing, JPG etc) will also be in this wrapped format.</p>
  25 <p>This is most useful when looking at alignments with less than 20 sequences.
  26 </p>
  27 <table width="480" border="1">
  28   <tr><td>
  29
  30 <table border="0"  cellpadding="0" cellspacing="0">
  31         <tr>
  32           <td colspan="6">&nbsp;</td>
  33           <td colspan="9">10<br>
  34             |</td>
  35           <td></td>
  36           <td colspan="9">20<br>
  37             |</td>
  38           <td></td>
  39         </tr>
  40         <tr>
  41           <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
  42           <td bgcolor="#e6331a">K</td>
  43           <td bgcolor="#1ab3b3">H</td>
  44           <td bgcolor="#80b3e6">V</td>
  45           <td bgcolor="#80b3e6">C</td>
  46           <td bgcolor="#1ab3b3">Y</td>
  47           <td bgcolor="#80b3e6">V</td>
  48           <td bgcolor="#80b3e6">A</td>
  49           <td>D</td>
  50           <td bgcolor="#80b3e6">C</td>
  51           <td bgcolor="#e6994d">G</td>
  52           <td bgcolor="#e6994d">G</td>
  53           <td bgcolor="#80b3e6">I</td>
  54           <td>A</td>
  55           <td bgcolor="#80b3e6">L</td>
  56           <td>E</td>
  57           <td bgcolor="#1acc1a">T</td>
  58           <td bgcolor="#1acc1a">S</td>
  59           <td bgcolor="#e6331a">K</td>
  60           <td bgcolor="#80b3e6">V</td>
  61           <td bgcolor="#80b3e6">L</td>
  62           <td bgcolor="#80b3e6">M</td>
  63           <td>T</td>
  64           <td bgcolor="#e6331a">K</td>
  65           <td>N</td>
  66           <td bgcolor="#80b3e6">I</td>
  67           <td bgcolor="#80b3e6">A</td>
  68         </tr>
  69         <tr>
  70           <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
  71           <td>S</td>
  72           <td>N</td>
  73           <td bgcolor="#80b3e6">I</td>
  74           <td bgcolor="#80b3e6">I</td>
  75           <td bgcolor="#80b3e6">F</td>
  76           <td bgcolor="#80b3e6">V</td>
  77           <td bgcolor="#80b3e6">A</td>
  78           <td bgcolor="#e6994d">G</td>
  79           <td bgcolor="#80b3e6">L</td>
  80           <td bgcolor="#e6994d">G</td>
  81           <td bgcolor="#e6994d">G</td>
  82           <td bgcolor="#80b3e6">I</td>
  83           <td bgcolor="#e6994d">G</td>
  84           <td bgcolor="#80b3e6">L</td>
  85           <td bgcolor="#cc4dcc">D</td>
  86           <td bgcolor="#1acc1a">T</td>
  87           <td bgcolor="#1acc1a">S</td>
  88           <td bgcolor="#e6331a">R</td>
  89           <td>E</td>
  90           <td bgcolor="#80b3e6">I</td>
  91           <td bgcolor="#80b3e6">V</td>
  92           <td>K</td>
  93           <td>S</td>
  94           <td bgcolor="#e6994d">G</td>
  95           <td bgcolor="#cccc00">P</td>
  96           <td>K</td>
  97         </tr>
  98         <tr>
  99           <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
 100           <td bgcolor="#e6331a">K</td>
 101           <td bgcolor="#80b3e6">V</td>
 102           <td bgcolor="#80b3e6">A</td>
 103           <td bgcolor="#80b3e6">L</td>
 104           <td bgcolor="#80b3e6">V</td>
 105           <td bgcolor="#1acc1a">T</td>
 106           <td bgcolor="#e6994d">G</td>
 107           <td>A</td>
 108           <td bgcolor="#80b3e6">A</td>
 109           <td>Q</td>
 110           <td bgcolor="#e6994d">G</td>
 111           <td bgcolor="#80b3e6">I</td>
 112           <td bgcolor="#e6994d">G</td>
 113           <td>R</td>
 114           <td>A</td>
 115           <td>F</td>
 116           <td>A</td>
 117           <td bgcolor="#cc4dcc">E</td>
 118           <td bgcolor="#80b3e6">A</td>
 119           <td bgcolor="#80b3e6">L</td>
 120           <td bgcolor="#80b3e6">L</td>
 121           <td>L</td>
 122           <td bgcolor="#e6331a">K</td>
 123           <td bgcolor="#e6994d">G</td>
 124           <td>.</td>
 125           <td bgcolor="#80b3e6">A</td>
 126         </tr>
 127         <tr>
 128           <td height="5"></td>
 129         </tr>
 130         <tr>
 131           <td colspan="6">&nbsp;</td>
 132           <td colspan="9">36<br>
 133             |</td>
 134           <td></td>
 135           <td colspan="9">46<br>
 136             |</td>
 137           <td></td>
 138         </tr>
 139         <tr>
 140           <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
 141           <td bgcolor="#e6331a">K</td>
 142           <td bgcolor="#80b3e6">L</td>
 143           <td bgcolor="#80b3e6">A</td>
 144           <td bgcolor="#80b3e6">I</td>
 145           <td bgcolor="#80b3e6">L</td>
 146           <td>Q</td>
 147           <td>S</td>
 148           <td bgcolor="#80b3e6">V</td>
 149           <td>E</td>
 150           <td bgcolor="#1acc1a">N</td>
 151           <td bgcolor="#cccc00">P</td>
 152           <td bgcolor="#cccc00">P</td>
 153           <td>.</td>
 154           <td>.</td>
 155           <td>.</td>
 156           <td>.</td>
 157           <td>.</td>
 158           <td>.</td>
 159           <td>.</td>
 160           <td>.</td>
 161           <td>A</td>
 162           <td bgcolor="#80b3e6">I</td>
 163           <td bgcolor="#80b3e6">A</td>
 164           <td bgcolor="#1acc1a">Q</td>
 165           <td bgcolor="#80b3e6">L</td>
 166           <td>Q</td>
 167         </tr>
 168         <tr>
 169           <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
 170           <td>N</td>
 171           <td bgcolor="#80b3e6">L</td>
 172           <td bgcolor="#80b3e6">V</td>
 173           <td bgcolor="#80b3e6">V</td>
 174           <td bgcolor="#80b3e6">L</td>
 175           <td bgcolor="#cc4dcc">D</td>
 176           <td>R</td>
 177           <td bgcolor="#80b3e6">I</td>
 178           <td bgcolor="#cc4dcc">D</td>
 179           <td bgcolor="#1acc1a">N</td>
 180           <td bgcolor="#cccc00">P</td>
 181           <td bgcolor="#80b3e6">A</td>
 182           <td>A</td>
 183           <td>.</td>
 184           <td>.</td>
 185           <td>.</td>
 186           <td>.</td>
 187           <td>.</td>
 188           <td>.</td>
 189           <td>.</td>
 190           <td>.</td>
 191           <td bgcolor="#80b3e6">I</td>
 192           <td bgcolor="#80b3e6">A</td>
 193           <td bgcolor="#cc4dcc">E</td>
 194           <td bgcolor="#80b3e6">L</td>
 195           <td>K</td>
 196         </tr>
 197         <tr>
 198           <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
 199           <td bgcolor="#e6331a">K</td>
 200           <td bgcolor="#80b3e6">V</td>
 201           <td bgcolor="#80b3e6">A</td>
 202           <td bgcolor="#80b3e6">L</td>
 203           <td bgcolor="#80b3e6">V</td>
 204           <td bgcolor="#cc4dcc">D</td>
 205           <td>W</td>
 206           <td>N</td>
 207           <td>L</td>
 208           <td>E</td>
 209           <td bgcolor="#80b3e6">A</td>
 210           <td bgcolor="#e6994d">G</td>
 211           <td>.</td>
 212           <td>.</td>
 213           <td>.</td>
 214           <td>.</td>
 215           <td>.</td>
 216           <td>.</td>
 217           <td>.</td>
 218           <td>V</td>
 219           <td>Q</td>
 220           <td bgcolor="#80b3e6">C</td>
 221           <td>K</td>
 222           <td>A</td>
 223           <td bgcolor="#80b3e6">A</td>
 224           <td>L</td>
 225         </tr>
 226         <tr>
 227           <td height="5"></td>
 228         </tr>
 229         <tr>
 230           <td colspan="6">&nbsp;</td>
 231           <td colspan="9">62<br>
 232             |</td>
 233           <td></td>
 234           <td colspan="9">72<br>
 235             |</td>
 236           <td></td>
 237         </tr>
 238         <tr>
 239           <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
 240           <td>S</td>
 241           <td bgcolor="#80b3e6">I</td>
 242           <td>K</td>
 243           <td bgcolor="#1ab3b3">H</td>
 244           <td>S</td>
 245           <td>.</td>
 246           <td>.</td>
 247           <td>.</td>
 248           <td>.</td>
 249           <td>T</td>
 250           <td>Q</td>
 251           <td bgcolor="#80b3e6">I</td>
 252           <td bgcolor="#80b3e6">F</td>
 253           <td bgcolor="#80b3e6">F</td>
 254           <td bgcolor="#80b3e6">W</td>
 255           <td>T</td>
 256           <td bgcolor="#80b3e6">F</td>
 257           <td bgcolor="#cc4dcc">D</td>
 258           <td bgcolor="#80b3e6">V</td>
 259           <td bgcolor="#1acc1a">T</td>
 260           <td bgcolor="#80b3e6">M</td>
 261           <td bgcolor="#80b3e6">A</td>
 262           <td>R</td>
 263           <td bgcolor="#cc4dcc">E</td>
 264           <td bgcolor="#cc4dcc">E</td>
 265           <td>M</td>
 266         </tr>
 267         <tr>
 268           <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
 269           <td>A</td>
 270           <td bgcolor="#80b3e6">L</td>
 271           <td>N</td>
 272           <td bgcolor="#cccc00">P</td>
 273           <td>.</td>
 274           <td>.</td>
 275           <td>.</td>
 276           <td>.</td>
 277           <td>K</td>
 278           <td>V</td>
 279           <td>T</td>
 280           <td bgcolor="#80b3e6">I</td>
 281           <td bgcolor="#1acc1a">T</td>
 282           <td bgcolor="#80b3e6">F</td>
 283           <td bgcolor="#1ab3b3">Y</td>
 284           <td bgcolor="#cccc00">P</td>
 285           <td bgcolor="#1ab3b3">Y</td>
 286           <td bgcolor="#cc4dcc">D</td>
 287           <td bgcolor="#80b3e6">V</td>
 288           <td bgcolor="#1acc1a">T</td>
 289           <td bgcolor="#80b3e6">V</td>
 290           <td bgcolor="#cccc00">P</td>
 291           <td>L</td>
 292           <td>A</td>
 293           <td bgcolor="#cc4dcc">E</td>
 294           <td>T</td>
 295         </tr>
 296         <tr>
 297           <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
 298           <td>D</td>
 299           <td>E</td>
 300           <td>Q</td>
 301           <td bgcolor="#80b3e6">F</td>
 302           <td>E</td>
 303           <td bgcolor="#cccc00">P</td>
 304           <td>.</td>
 305           <td>.</td>
 306           <td>.</td>
 307           <td>Q</td>
 308           <td>K</td>
 309           <td bgcolor="#1acc1a">T</td>
 310           <td bgcolor="#80b3e6">L</td>
 311           <td bgcolor="#80b3e6">F</td>
 312           <td bgcolor="#80b3e6">I</td>
 313           <td>Q</td>
 314           <td bgcolor="#80b3e6">C</td>
 315           <td bgcolor="#cc4dcc">D</td>
 316           <td bgcolor="#80b3e6">V</td>
 317           <td>A</td>
 318           <td>D</td>
 319           <td>Q</td>
 320           <td>Q</td>
 321           <td bgcolor="#1acc1a">Q</td>
 322           <td>L</td>
 323           <td>.</td>
 324         </tr>
 325         <tr>
 326           <td height="5"></td>
 327         </tr>
 328
 329
 330       </table>
 331 </table>
 332
 333
 334 </body>
 335 </html>