help/html/features/wrap.html

   1 <html>\r
   2 \r
   3 <head><title>Wrap Alignment</title></head>\r
   4 \r
   5 <body>\r
   6 <p><strong>Wrap alignment </strong></p>\r
   7 <p>Use this feature to wrap an alignment to the screen width. </p>\r
   8 <p>All output (HTML, Printing, JPG etc) will also be in this wrapped format.</p>\r
   9 <p>This is most useful when looking at alignments with less than 20 sequences.\r
  10 </p>\r
  11 <p>Note: No editing is possible when the alignment is in &quot;Wrapped&quot; mode,\r
  12   but all other features such as searching, calculations and changing the background\r
  13   colour are unaffected.</p>\r
  14 <table width="480" border="1">\r
  15   <tr><td>\r
  16 \r
  17 <table border="0"  cellpadding="0" cellspacing="0">\r
  18         <tr>\r
  19           <td colspan="6">&nbsp;</td>\r
  20           <td colspan="9">10<br>\r
  21             |</td>\r
  22           <td></td>\r
  23           <td colspan="9">20<br>\r
  24             |</td>\r
  25           <td></td>\r
  26         </tr>\r
  27         <tr>\r
  28           <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>\r
  29           <td bgcolor="#e6331a">K</td>\r
  30           <td bgcolor="#1ab3b3">H</td>\r
  31           <td bgcolor="#80b3e6">V</td>\r
  32           <td bgcolor="#80b3e6">C</td>\r
  33           <td bgcolor="#1ab3b3">Y</td>\r
  34           <td bgcolor="#80b3e6">V</td>\r
  35           <td bgcolor="#80b3e6">A</td>\r
  36           <td>D</td>\r
  37           <td bgcolor="#80b3e6">C</td>\r
  38           <td bgcolor="#e6994d">G</td>\r
  39           <td bgcolor="#e6994d">G</td>\r
  40           <td bgcolor="#80b3e6">I</td>\r
  41           <td>A</td>\r
  42           <td bgcolor="#80b3e6">L</td>\r
  43           <td>E</td>\r
  44           <td bgcolor="#1acc1a">T</td>\r
  45           <td bgcolor="#1acc1a">S</td>\r
  46           <td bgcolor="#e6331a">K</td>\r
  47           <td bgcolor="#80b3e6">V</td>\r
  48           <td bgcolor="#80b3e6">L</td>\r
  49           <td bgcolor="#80b3e6">M</td>\r
  50           <td>T</td>\r
  51           <td bgcolor="#e6331a">K</td>\r
  52           <td>N</td>\r
  53           <td bgcolor="#80b3e6">I</td>\r
  54           <td bgcolor="#80b3e6">A</td>\r
  55         </tr>\r
  56         <tr>\r
  57           <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>\r
  58           <td>S</td>\r
  59           <td>N</td>\r
  60           <td bgcolor="#80b3e6">I</td>\r
  61           <td bgcolor="#80b3e6">I</td>\r
  62           <td bgcolor="#80b3e6">F</td>\r
  63           <td bgcolor="#80b3e6">V</td>\r
  64           <td bgcolor="#80b3e6">A</td>\r
  65           <td bgcolor="#e6994d">G</td>\r
  66           <td bgcolor="#80b3e6">L</td>\r
  67           <td bgcolor="#e6994d">G</td>\r
  68           <td bgcolor="#e6994d">G</td>\r
  69           <td bgcolor="#80b3e6">I</td>\r
  70           <td bgcolor="#e6994d">G</td>\r
  71           <td bgcolor="#80b3e6">L</td>\r
  72           <td bgcolor="#cc4dcc">D</td>\r
  73           <td bgcolor="#1acc1a">T</td>\r
  74           <td bgcolor="#1acc1a">S</td>\r
  75           <td bgcolor="#e6331a">R</td>\r
  76           <td>E</td>\r
  77           <td bgcolor="#80b3e6">I</td>\r
  78           <td bgcolor="#80b3e6">V</td>\r
  79           <td>K</td>\r
  80           <td>S</td>\r
  81           <td bgcolor="#e6994d">G</td>\r
  82           <td bgcolor="#cccc00">P</td>\r
  83           <td>K</td>\r
  84         </tr>\r
  85         <tr>\r
  86           <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>\r
  87           <td bgcolor="#e6331a">K</td>\r
  88           <td bgcolor="#80b3e6">V</td>\r
  89           <td bgcolor="#80b3e6">A</td>\r
  90           <td bgcolor="#80b3e6">L</td>\r
  91           <td bgcolor="#80b3e6">V</td>\r
  92           <td bgcolor="#1acc1a">T</td>\r
  93           <td bgcolor="#e6994d">G</td>\r
  94           <td>A</td>\r
  95           <td bgcolor="#80b3e6">A</td>\r
  96           <td>Q</td>\r
  97           <td bgcolor="#e6994d">G</td>\r
  98           <td bgcolor="#80b3e6">I</td>\r
  99           <td bgcolor="#e6994d">G</td>\r
 100           <td>R</td>\r
 101           <td>A</td>\r
 102           <td>F</td>\r
 103           <td>A</td>\r
 104           <td bgcolor="#cc4dcc">E</td>\r
 105           <td bgcolor="#80b3e6">A</td>\r
 106           <td bgcolor="#80b3e6">L</td>\r
 107           <td bgcolor="#80b3e6">L</td>\r
 108           <td>L</td>\r
 109           <td bgcolor="#e6331a">K</td>\r
 110           <td bgcolor="#e6994d">G</td>\r
 111           <td>.</td>\r
 112           <td bgcolor="#80b3e6">A</td>\r
 113         </tr>\r
 114         <tr>\r
 115           <td height="5"></td>\r
 116         </tr>\r
 117         <tr>\r
 118           <td colspan="6">&nbsp;</td>\r
 119           <td colspan="9">36<br>\r
 120             |</td>\r
 121           <td></td>\r
 122           <td colspan="9">46<br>\r
 123             |</td>\r
 124           <td></td>\r
 125         </tr>\r
 126         <tr>\r
 127           <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>\r
 128           <td bgcolor="#e6331a">K</td>\r
 129           <td bgcolor="#80b3e6">L</td>\r
 130           <td bgcolor="#80b3e6">A</td>\r
 131           <td bgcolor="#80b3e6">I</td>\r
 132           <td bgcolor="#80b3e6">L</td>\r
 133           <td>Q</td>\r
 134           <td>S</td>\r
 135           <td bgcolor="#80b3e6">V</td>\r
 136           <td>E</td>\r
 137           <td bgcolor="#1acc1a">N</td>\r
 138           <td bgcolor="#cccc00">P</td>\r
 139           <td bgcolor="#cccc00">P</td>\r
 140           <td>.</td>\r
 141           <td>.</td>\r
 142           <td>.</td>\r
 143           <td>.</td>\r
 144           <td>.</td>\r
 145           <td>.</td>\r
 146           <td>.</td>\r
 147           <td>.</td>\r
 148           <td>A</td>\r
 149           <td bgcolor="#80b3e6">I</td>\r
 150           <td bgcolor="#80b3e6">A</td>\r
 151           <td bgcolor="#1acc1a">Q</td>\r
 152           <td bgcolor="#80b3e6">L</td>\r
 153           <td>Q</td>\r
 154         </tr>\r
 155         <tr>\r
 156           <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>\r
 157           <td>N</td>\r
 158           <td bgcolor="#80b3e6">L</td>\r
 159           <td bgcolor="#80b3e6">V</td>\r
 160           <td bgcolor="#80b3e6">V</td>\r
 161           <td bgcolor="#80b3e6">L</td>\r
 162           <td bgcolor="#cc4dcc">D</td>\r
 163           <td>R</td>\r
 164           <td bgcolor="#80b3e6">I</td>\r
 165           <td bgcolor="#cc4dcc">D</td>\r
 166           <td bgcolor="#1acc1a">N</td>\r
 167           <td bgcolor="#cccc00">P</td>\r
 168           <td bgcolor="#80b3e6">A</td>\r
 169           <td>A</td>\r
 170           <td>.</td>\r
 171           <td>.</td>\r
 172           <td>.</td>\r
 173           <td>.</td>\r
 174           <td>.</td>\r
 175           <td>.</td>\r
 176           <td>.</td>\r
 177           <td>.</td>\r
 178           <td bgcolor="#80b3e6">I</td>\r
 179           <td bgcolor="#80b3e6">A</td>\r
 180           <td bgcolor="#cc4dcc">E</td>\r
 181           <td bgcolor="#80b3e6">L</td>\r
 182           <td>K</td>\r
 183         </tr>\r
 184         <tr>\r
 185           <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>\r
 186           <td bgcolor="#e6331a">K</td>\r
 187           <td bgcolor="#80b3e6">V</td>\r
 188           <td bgcolor="#80b3e6">A</td>\r
 189           <td bgcolor="#80b3e6">L</td>\r
 190           <td bgcolor="#80b3e6">V</td>\r
 191           <td bgcolor="#cc4dcc">D</td>\r
 192           <td>W</td>\r
 193           <td>N</td>\r
 194           <td>L</td>\r
 195           <td>E</td>\r
 196           <td bgcolor="#80b3e6">A</td>\r
 197           <td bgcolor="#e6994d">G</td>\r
 198           <td>.</td>\r
 199           <td>.</td>\r
 200           <td>.</td>\r
 201           <td>.</td>\r
 202           <td>.</td>\r
 203           <td>.</td>\r
 204           <td>.</td>\r
 205           <td>V</td>\r
 206           <td>Q</td>\r
 207           <td bgcolor="#80b3e6">C</td>\r
 208           <td>K</td>\r
 209           <td>A</td>\r
 210           <td bgcolor="#80b3e6">A</td>\r
 211           <td>L</td>\r
 212         </tr>\r
 213         <tr>\r
 214           <td height="5"></td>\r
 215         </tr>\r
 216         <tr>\r
 217           <td colspan="6">&nbsp;</td>\r
 218           <td colspan="9">62<br>\r
 219             |</td>\r
 220           <td></td>\r
 221           <td colspan="9">72<br>\r
 222             |</td>\r
 223           <td></td>\r
 224         </tr>\r
 225         <tr>\r
 226           <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>\r
 227           <td>S</td>\r
 228           <td bgcolor="#80b3e6">I</td>\r
 229           <td>K</td>\r
 230           <td bgcolor="#1ab3b3">H</td>\r
 231           <td>S</td>\r
 232           <td>.</td>\r
 233           <td>.</td>\r
 234           <td>.</td>\r
 235           <td>.</td>\r
 236           <td>T</td>\r
 237           <td>Q</td>\r
 238           <td bgcolor="#80b3e6">I</td>\r
 239           <td bgcolor="#80b3e6">F</td>\r
 240           <td bgcolor="#80b3e6">F</td>\r
 241           <td bgcolor="#80b3e6">W</td>\r
 242           <td>T</td>\r
 243           <td bgcolor="#80b3e6">F</td>\r
 244           <td bgcolor="#cc4dcc">D</td>\r
 245           <td bgcolor="#80b3e6">V</td>\r
 246           <td bgcolor="#1acc1a">T</td>\r
 247           <td bgcolor="#80b3e6">M</td>\r
 248           <td bgcolor="#80b3e6">A</td>\r
 249           <td>R</td>\r
 250           <td bgcolor="#cc4dcc">E</td>\r
 251           <td bgcolor="#cc4dcc">E</td>\r
 252           <td>M</td>\r
 253         </tr>\r
 254         <tr>\r
 255           <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>\r
 256           <td>A</td>\r
 257           <td bgcolor="#80b3e6">L</td>\r
 258           <td>N</td>\r
 259           <td bgcolor="#cccc00">P</td>\r
 260           <td>.</td>\r
 261           <td>.</td>\r
 262           <td>.</td>\r
 263           <td>.</td>\r
 264           <td>K</td>\r
 265           <td>V</td>\r
 266           <td>T</td>\r
 267           <td bgcolor="#80b3e6">I</td>\r
 268           <td bgcolor="#1acc1a">T</td>\r
 269           <td bgcolor="#80b3e6">F</td>\r
 270           <td bgcolor="#1ab3b3">Y</td>\r
 271           <td bgcolor="#cccc00">P</td>\r
 272           <td bgcolor="#1ab3b3">Y</td>\r
 273           <td bgcolor="#cc4dcc">D</td>\r
 274           <td bgcolor="#80b3e6">V</td>\r
 275           <td bgcolor="#1acc1a">T</td>\r
 276           <td bgcolor="#80b3e6">V</td>\r
 277           <td bgcolor="#cccc00">P</td>\r
 278           <td>L</td>\r
 279           <td>A</td>\r
 280           <td bgcolor="#cc4dcc">E</td>\r
 281           <td>T</td>\r
 282         </tr>\r
 283         <tr>\r
 284           <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>\r
 285           <td>D</td>\r
 286           <td>E</td>\r
 287           <td>Q</td>\r
 288           <td bgcolor="#80b3e6">F</td>\r
 289           <td>E</td>\r
 290           <td bgcolor="#cccc00">P</td>\r
 291           <td>.</td>\r
 292           <td>.</td>\r
 293           <td>.</td>\r
 294           <td>Q</td>\r
 295           <td>K</td>\r
 296           <td bgcolor="#1acc1a">T</td>\r
 297           <td bgcolor="#80b3e6">L</td>\r
 298           <td bgcolor="#80b3e6">F</td>\r
 299           <td bgcolor="#80b3e6">I</td>\r
 300           <td>Q</td>\r
 301           <td bgcolor="#80b3e6">C</td>\r
 302           <td bgcolor="#cc4dcc">D</td>\r
 303           <td bgcolor="#80b3e6">V</td>\r
 304           <td>A</td>\r
 305           <td>D</td>\r
 306           <td>Q</td>\r
 307           <td>Q</td>\r
 308           <td bgcolor="#1acc1a">Q</td>\r
 309           <td>L</td>\r
 310           <td>.</td>\r
 311         </tr>\r
 312         <tr>\r
 313           <td height="5"></td>\r
 314         </tr>\r
 315 \r
 316 \r
 317       </table>\r
 318 </table>\r
 319 \r
 320 \r
 321 </body>\r
 322 </html>\r