1 #-------------------------------------------------------------------------------
2 # Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
3 # Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5 # This file is part of Jalview.
7 # Jalview is free software: you can redistribute it and/or
8 # modify it under the terms of the GNU General Public License
9 # as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 # Jalview is distributed in the hope that it will be useful, but
12 # WITHOUT ANY WARRANTY; without even the implied warranty
13 # of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 # PURPOSE. See the GNU General Public License for more details.
16 # You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 #-------------------------------------------------------------------------------
20 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
21 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
23 * This file is part of Jalview.
25 * Jalview is free software: you can redistribute it and/or
26 * modify it under the terms of the GNU General Public License
27 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
29 * Jalview is distributed in the hope that it will be useful, but
30 * WITHOUT ANY WARRANTY; without even the implied warranty
31 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
32 * PURPOSE. See the GNU General Public License for more details.
34 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
36 <head><title>Amino Acid Properties</title>
38 <body><div align="center">
39 <h1>Amino Acid Properties</h1>
40 <img src="properties.gif">
42 <table width="295" border="1" cellspacing="0" cellpadding="0">
44 <td width="291"><pre><font size="4" face="Courier New, Courier, mono"><strong>ILVCAGMFYWHKREQDNSTPBZX-</strong>
45 XXXXXXXXXXX·ยท·····X···XX Hydrophobic
46 ········XXXXXXXXXX·XXXXX Polar
47 ··XXXX·········XXXXX··XX Small
48 ···················X··XX Proline
49 ····XX···········X····XX Tiny
50 XXX···················XX Aliphatic
51 ·······XXXX···········XX Aromatic
52 ··········XXX·········XX Positive
53 ·············X·X······XX Negative
54 ··········XXXX·X······XX Charged</font></pre></td>
59 From Livingstone, C. D. and Barton, G. J. (1993), <br>
60 "Protein Sequence Alignments: A Strategy for the Hierarchical Analysis of Residue
61 Conservation", Comp. Appl. Bio. Sci., 9, 745-756. </p>