JAL-4012 release date bump and JAL-4004 tweak to include current version in generated...
[jalview.git] / optimization / full-profile-ENSG000000157764-to-display-ff.txt
1 "run  Clazz.startProfiling() first
2
3  Total new objects: 3208398
4
5 count           exec(ms)
6 --------        --------        ------------------------------
7 ...2100232      ....-40921              undefined[]
8 ....504006      .....12402              java.lang.StringBuilder
9 ....436605      ......3414              java.util.HashMap.Node
10 ....411205      ......2841              jalview.datamodel.Annotation
11 ....232907      ......1122              Float
12 ....215619      ......2440              jalview.datamodel.features.FeatureStore$SearchCriterion$3
13 ....206107      ......1241              java.awt.Color
14 ....206007      ......1059              Integer
15 ....205602      ......3110              jalview.datamodel.ResidueCount
16 ....205602      ......1697              jalview.datamodel.Profile
17 ....172921      ......3075              java.util.ArrayList.Itr
18 ....170314      .....-3144              Object[]
19 ....139806      .......457              Long
20 ....138605      ......1033              swingjs.json.JSON.JSONList
21 ....108563      ......1065              java.util.HashMap
22 ....108553      .....-2025              java.util.HashMap.Node[]
23 ....107812      ......9397              jalview.datamodel.SequenceFeature
24 .....79143      ......1124              java.util.ArrayList
25 .....61212      ......1423              java.util.HashMap.EntryIterator
26 .....52231      ......1485              java.util.HashMap.EntrySet
27 .....47591      .......876              swingjs.json.JSON.JSONMap
28 .....46224      .......266              swingjs.json.JSON.JSONList.ListIterator
29 ......7084      .......450              jalview.datamodel.features.NCNode
30 ......3870      ........33              jalview.analysis.AlignmentUtils.DnaVariant
31 ......3076      ........96              java.awt.Dimension
32 ......2153      ........43              java.beans.PropertyChangeEvent
33 ......1561      ........13              jalview.datamodel.SequenceCursor
34 ......1356      ........18              java.util.LinkedHashMap.Entry
35 ......1329      .......105              jalview.datamodel.features.NCList
36 ......1290      .......-22              java.util.ArrayList[]
37 .......687      .........9              java.util.Hashtable.Entry
38 .......684      ........16              jalview.datamodel.DBRefEntry
39 .......526      ........16              javajs.util.Lst
40 .......505      ........21              java.util.TreeMap.ValueIterator
41 .......479      .........9              javax.swing.event.EventListenerList
42 .......449      ........19              java.util.HashSet
43 .......449      .........9              java.util.ArrayList$SubList$1
44 .......449      .........8              java.util.ArrayList.SubList
45 .......440      .........0              jalview.datamodel.HiddenCursorPosition
46 .......402      ........-8              java.lang.Class[]
47 .......346      .........4              java.awt.geom.AffineTransform
48 .......346      .........4              java.awt.BasicStroke
49 .......325      ........28              java.awt.EventDispatchThread$1
50 .......290      ........-7              java.beans.PropertyChangeListener[]
51 .......287      ........11              java.util.Hashtable.Enumerator
52 .......280      .........5              java.awt.Rectangle
53 .......276      .........7              java.util.TreeMap.EntryIterator
54 .......274      ........-7              java.awt.Component[]
55 .......261      ........10              java.beans.PropertyChangeSupport
56 .......261      .........6              java.beans.PropertyChangeSupport.PropertyChangeListenerMap
57 .......226      .........3              java.util.Collections.UnmodifiableSet
58 .......219      .........1              com.stevesoft.pat.StrPos
59 .......206      .........5              java.awt.AWTEventMulticaster
60 .......200      .........5              java.util.HashMap.KeySet
61 .......200      .........5              java.util.HashMap.KeyIterator
62 .......199      ........35              java.awt.EventDispatchThread
63 .......199      ........17              java.awt.EventDispatchThread.HierarchyEventFilter
64 .......198      .........2              javax.swing.plaf.ComponentInputMapUIResource
65 .......187      .........3              java.util.Arrays.ArrayList
66 .......182      ........14              java.awt.event.ContainerEvent
67 .......176      ........-7              java.util.Hashtable.Entry[]
68 .......173      .........2              javax.swing.ActionMap
69 .......173      ........-5              javax.swing.KeyStroke[]
70 .......171      .........3              java.awt.Insets
71 .......169      .........6              javax.swing.AbstractButton.Handler
72 .......169      .........5              javax.swing.JMenuItem.MenuItemFocusListener
73 .......169      .........2              swingjs.plaf.ButtonListener
74 .......154      .........4              javax.swing.KeyboardManager.ComponentKeyStrokePair
75 .......145      ........14              java.awt.event.MouseEvent
76 .......138      .........1              jalview.datamodel.PDBEntry
77 .......136      .........5              java.util.Vector.Itr
78 .......132      .........2              javajs.util.SB
79 .......126      .........3              java.awt.EventQueueItem
80 .......122      .........6              java.io.ByteArrayInputStream
81 .......122      .........6              java.io.BufferedInputStream
82 .......116      .........1              javax.swing.DefaultButtonModel
83 .......112      .........6              java.lang.StringBuffer
84 .......100      .........6              jalview.datamodel.features.FeatureStore$SearchCriterion$2
85 ........99      .........2              javax.swing.event.ChangeEvent
86 ........94      .......690              javax.swing.JMenuItem
87 ........88      .........3              java.util.Hashtable
88 ........88      .........0              java.util.TreeMap.Entry
89 ........77      .........1              javax.swing.ArrayTable
90 ........72      .........8              jalview.datamodel.features.FeatureStore
91 ........72      .........1              java.util.TreeMap
92 ........69      ........-1              java.util.concurrent.ConcurrentHashMap.HashEntry[]
93 ........67      .......176              jalview.datamodel.Sequence
94 ........67      ........15              jalview.datamodel.features.SequenceFeatures
95 ........67      .........7              java.net.URL
96 ........65      .........1              javajs.util.AjaxURLConnection
97 ........64      .........1              java.util.concurrent.ConcurrentHashMap.Segment
98 ........63      ........-2              jalview.datamodel.SequenceGroup[]
99 ........60      .........4              java.util.Collections$UnmodifiableCollection$1
100 ........60      .........0              javax.swing.SizeRequirements
101 ........55      .......163              swingjs.json.JSON.JSONReader
102 ........53      .........5              java.util.ArrayList.ListItr
103 ........53      .........4              javax.swing.JToggleButton.ToggleButtonModel
104 ........53      ........-2              swingjs.api.js.DOMNode[]
105 ........51      ........-2              jalview.datamodel.SequenceI[]
106 ........44      .........2              jalview.util.LinkedIdentityHashSet.IdentityWrapper
107 ........39      .........5              jalview.datamodel.HiddenColumnsCursor
108 ........38      .........1              java.lang.StackTraceElement
109 ........35      .......169              javax.swing.JCheckBoxMenuItem
110 ........34      ........11              jalview.util.MapList
111 ........33      .........5              java.util.StringTokenizer
112 ........33      .........5              jalview.datamodel.Sequence.DBModList
113 ........33      .........2              jalview.renderer.ScaleRenderer.ScaleMark
114 ........33      .........2              jalview.ext.ensembl.EnsemblXref
115 ........32      .........1              java.util.Collections.SynchronizedRandomAccessList
116 ........31      .........3              java.awt.event.ComponentEvent
117 ........31      .........2              com.stevesoft.pat.oneChar
118 ........31      .........1              java.lang.reflect.Constructor
119 ........31      .........0              java.awt.Point
120 ........30      .........0              javax.swing.KeyStroke
121 ........30      .........0              javax.swing.ComponentInputMap
122 ........28      .........1              com.stevesoft.pat.patInt
123 ........27      .........1              java.util.Vector
124 ........24      .........1              javax.swing.DefaultSingleSelectionModel
125 ........23      .........5              java.util.SubList$1
126 ........23      .........3              java.util.AbstractList.ListItr
127 ........23      .........3              jalview.datamodel.Mapping
128 ........23      .........2              java.util.TreeMap.EntrySet
129 ........23      .........1              java.util.TreeMap.Values
130 ........22      ........21              javax.swing.JPopupMenu
131 ........22      ........14              javax.swing.JPopupMenu.Separator
132 ........22      .........2              javax.swing.JMenu.WinListener
133 ........22      .........2              javax.swing.JMenu.MenuChangeListener
134 ........22      .........2              java.util.TimSort
135 ........22      .........1              java.util.RandomAccessSubList
136 ........22      .........0              swingjs.plaf.JSPopupMenuUI.JSMenuKeyListener
137 ........21      ........41              javax.swing.JMenu
138 ........21      .........2              jalview.ext.ensembl.EnsemblProtein
139 ........21      .........0              jalview.ext.ensembl.EnsemblCdna
140 ........20      .........0              java.awt.FlowLayout
141 ........18      .......143              javax.swing.JRadioButtonMenuItem
142 ........18      .........3              java.util.Formatter.Flags
143 ........18      .........1              java.awt.event.InvocationEvent
144 ........18      .........0              java.awt.event.ItemEvent
145 ........18      .........0              java.awt.BorderLayout
146 ........16      .........0              jalview.datamodel.features.FeatureAttributes.AttributeData
147 ........15      ........11              javax.swing.JPanel
148 ........15      .........1              javax.swing.JComponent$2
149 ........14      .......406              jalview.datamodel.Alignment
150 ........14      .........7              jalview.datamodel.HiddenColumns
151 ........14      .........1              jalview.gui.ColourMenuHelper$3
152 ........14      .........0              java.util.LinkedList.ListItr
153 ........14      .........0              jalview.schemes.JalviewColourScheme
154 ........14      .........0              jalview.datamodel.HiddenSequences
155 ........13      .........2              jalview.util.ReverseListIterator
156 ........13      .........1              java.util.LinkedHashMap
157 ........12      .........1              java.awt.AlphaComposite
158 ........11      .........0              jalview.jbgui.GAlignFrame$1
159 ........10      .........0              java.util.BitSet
160 ........10      .........0              java.awt.geom.Rectangle2D.Float
161 ........10      .........0              java.awt.Color[]
162 .........9      .........1              java.util.LinkedHashMap.LinkedEntrySet
163 .........9      .........1              java.util.LinkedHashMap.LinkedEntryIterator
164 .........8      .........5              java.util.Formatter.FormatSpecifier
165 .........8      .........0              java.util.Formatter.FixedString
166 .........8      .........0              java.awt.Font
167 .........8      .........0              com.stevesoft.pat.Pthings
168 .........7      .........2              com.stevesoft.pat.Bracket
169 .........7      .........1              java.util.concurrent.ConcurrentHashMap.HashEntry
170 .........7      .........0              javax.swing.text.Segment
171 .........6      .........1              java.util.AbstractList.Itr
172 .........6      .........1              com.stevesoft.pat.SubMark
173 .........6      .........1              com.stevesoft.pat.OrMark
174 .........6      .........1              com.stevesoft.pat.FastMulti
175 .........6      .........0              swingjs.JSFontMetrics
176 .........6      .........0              javax.swing.SizeRequirements[]
177 .........6      .........0              javax.swing.DefaultBoundedRangeModel
178 .........6      .........0              java.util.Formatter.FormatString[]
179 .........6      .........0              jalview.datamodel.Range
180 .........6      .........0              com.stevesoft.pat.Range
181 .........5      .........1              swingjs.JSGraphics2D
182 .........5      .........0              sun.java2d.StateTrackableDelegate
183 .........5      .........0              javax.swing.event.InternalFrameEvent
184 .........5      .........0              java.awt.RenderingHints
185 .........5      .........0              jalview.renderer.ResidueShader
186 .........5      .........0              Boolean
187 .........4      .........3              javax.swing.JLabel
188 .........4      .........3              jalview.analysis.AnnotationSorter
189 .........4      .........2              java.util.concurrent.ConcurrentHashMap
190 .........4      .........1              jalview.analysis.AnnotationSorter$2
191 .........4      .........0              sun.java2d.StateTrackable.State
192 .........4      .........0              javax.swing.JScrollBar.ModelListener
193 .........4      .........0              java.util.concurrent.ConcurrentHashMap.Segment[]
194 .........4      .........0              java.awt.geom.RectIterator
195 .........4      .........0              java.awt.event.AdjustmentEvent
196 .........4      .........0              jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType
197 .........4      .........0              jalview.analysis.AnnotationSorter$3
198 .........4      .........0              jalview.analysis.AnnotationSorter$1
199 .........4      .........0              com.stevesoft.pat.End
200 .........4      ........-1              jalview.datamodel.Annotation[]
201 .........3      ........46              java.awt.image.BufferedImage
202 .........3      .........4              java.awt.image.DataBufferInt
203 .........3      .........3              java.awt.image.DirectColorModel
204 .........3      .........1              java.awt.GridLayout
205 .........3      .........1              jalview.datamodel.StartRegionIterator
206 .........3      .........0              swingjs.JSToolkit$1
207 .........3      .........0              sun.font.FontDesignMetrics.KeyReference
208 .........3      .........0              sun.font.FontDesignMetrics
209 .........3      .........0              javax.swing.ButtonGroup
210 .........3      .........0              java.util.regex.Matcher
211 .........3      .........0              java.util.Collections.SynchronizedSet
212 .........3      .........0              java.awt.image.SinglePixelPackedSampleModel
213 .........3      .........0              jalview.schemes.NucleotideColourScheme
214 .........3      .........0              jalview.renderer.ScaleRenderer
215 .........3      .........0              jalview.gui.AnnotationPanel.DragMode
216 .........3      .........0              jalview.datamodel.features.FeatureAttributes.Datatype
217 .........3      .........0              jalview.datamodel.VisibleContigsIterator
218 .........3      .........0              jalview.analysis.AnnotationSorter.SequenceAnnotationOrder
219 .........2      .......190              javax.swing.JScrollBar
220 .........2      ........16              javax.swing.JScrollPane.ScrollBar
221 .........2      ........13              com.stevesoft.pat.Regex
222 .........2      ........10              javax.swing.JProgressBar
223 .........2      .........2              java.awt.Container
224 .........2      .........1              java.util.Hashtable.KeySet
225 .........2      .........1              java.lang.IndexOutOfBoundsException
226 .........2      .........1              java.awt.geom.Path2D.Float.CopyIterator
227 .........2      .........1              java.awt.geom.Path2D.Float
228 .........2      .........0              javax.swing.text.AbstractDocument.DefaultDocumentEvent
229 .........2      .........0              javax.swing.event.UndoableEditEvent
230 .........2      .........0              javax.swing.border.LineBorder
231 .........2      .........0              javax.swing.JProgressBar.ModelListener
232 .........2      .........0              java.util.LinkedHashMap.LinkedValues
233 .........2      .........0              java.util.LinkedHashMap.LinkedValueIterator
234 .........2      .........0              java.util.IdentityHashMap.KeyIterator
235 .........2      .........0              java.util.Collections.SynchronizedCollection
236 .........2      .........0              java.util.Collections.SingletonList
237 .........2      .........0              java.util.Collections$1
238 .........2      .........0              java.util.ArrayDeque
239 .........2      .........0              java.lang.Thread
240 .........2      .........0              java.lang.StackTraceElement[]
241 .........2      .........0              java.awt.event.ActionEvent
242 .........2      .........0              jalview.util.IntRangeComparator
243 .........2      .........0              jalview.io.SequenceAnnotationReport
244 .........2      .........0              jalview.gui.AlignmentPanel[]
245 .........2      .........0              jalview.ext.ensembl.EnsemblSequenceFetcher.EnsemblFeatureType[]
246 .........2      .........0              jalview.ext.ensembl.EnsemblLookup
247 .........2      .........0              jalview.datamodel.features.RangeComparator
248 .........2      .........0              jalview.datamodel.SearchResults
249 .........2      .........0              jalview.datamodel.AlignmentAnnotation[]
250 .........2      .........0              jalview.datamodel.AlignmentAnnotation
251 .........2      .........0              jalview.controller.AlignViewController
252 .........2      .........0              com.stevesoft.pat.patInf
253 .........2      .........0              com.stevesoft.pat.Rthings
254 .........2      .........0              com.stevesoft.pat.Or
255 .........2      .........0              com.stevesoft.pat.NullPattern
256 .........1      .....11161              jalview.gui.AlignFrame
257 .........1      .......561              jalview.gui.AlignViewport
258 .........1      .......441              jalview.gui.AlignmentPanel
259 .........1      ........65              jalview.schemes.ColourSchemes
260 .........1      ........57              jalview.gui.SeqPanel
261 .........1      ........33              jalview.gui.SeqCanvas
262 .........1      ........19              javax.swing.JScrollPane
263 .........1      ........11              javax.swing.JTabbedPane
264 .........1      ........11              jalview.io.FileFormats
265 .........1      .........9              jalview.gui.FeatureRenderer
266 .........1      .........8              javax.swing.JRootPane
267 .........1      .........8              javax.swing.JInternalFrame.JDesktopIcon
268 .........1      .........8              jalview.gui.IdPanel
269 .........1      .........7              jalview.gui.AnnotationPanel
270 .........1      .........6              jalview.datamodel.ColumnSelection.IntList
271 .........1      .........6              jalview.datamodel.ColumnSelection
272 .........1      .........5              javax.swing.JToolTip
273 .........1      .........5              jalview.jbgui.GAlignFrame$79
274 .........1      .........4              jalview.io.gff.SequenceOntologyLite
275 .........1      .........3              sun.awt.image.SunWritableRaster$1
276 .........1      .........3              jalview.jbgui.GAlignFrame$72
277 .........1      .........3              jalview.gui.ViewSelectionMenu
278 .........1      .........2              javax.swing.text.GapContent.RemoveUndo
279 .........1      .........2              javax.swing.JLayeredPane
280 .........1      .........2              jalview.util.LinkedIdentityHashSet$1
281 .........1      .........2              jalview.jbgui.GAlignFrame$83
282 .........1      .........2              jalview.gui.SequenceRenderer
283 .........1      .........2              jalview.gui.IdCanvas
284 .........1      .........2              jalview.ext.ensembl.EnsemblLookup$1
285 .........1      .........1              swingjs.JSKeyEvent
286 .........1      .........1              javax.swing.JViewport
287 .........1      .........1              javax.swing.JMenuBar
288 .........1      .........1              java.util.concurrent.locks.ReentrantReadWriteLock.ReadLock
289 .........1      .........1              java.util.concurrent.locks.ReentrantReadWriteLock
290 .........1      .........1              jalview.viewmodel.seqfeatures.FeaturesDisplayed
291 .........1      .........1              jalview.jbgui.GAlignFrame$99
292 .........1      .........1              jalview.jbgui.GAlignFrame$8
293 .........1      .........1              jalview.jbgui.GAlignFrame$59
294 .........1      .........1              jalview.jbgui.GAlignFrame$57
295 .........1      .........1              jalview.jbgui.GAlignFrame$54
296 .........1      .........1              jalview.jbgui.GAlignFrame$50
297 .........1      .........1              jalview.jbgui.GAlignFrame$49
298 .........1      .........1              jalview.jbgui.GAlignFrame$46
299 .........1      .........1              jalview.jbgui.GAlignFrame$41
300 .........1      .........1              jalview.jbgui.GAlignFrame$40
301 .........1      .........1              jalview.jbgui.GAlignFrame$29
302 .........1      .........1              jalview.jbgui.GAlignFrame$23
303 .........1      .........1              jalview.jbgui.GAlignFrame$21
304 .........1      .........1              jalview.jbgui.GAlignFrame$14
305 .........1      .........1              jalview.jbgui.GAlignFrame$13
306 .........1      .........1              jalview.jbgui.GAlignFrame$116
307 .........1      .........1              jalview.jbgui.GAlignFrame$102
308 .........1      .........1              jalview.io.SequenceAnnotationReport$1
309 .........1      .........1              jalview.io.FileFormat$3
310 .........1      .........1              jalview.io.FileFormat$13
311 .........1      .........1              jalview.gui.ScalePanel
312 .........1      .........1              jalview.gui.ProgressBar
313 .........1      .........1              jalview.gui.IdwidthAdjuster
314 .........1      .........1              jalview.gui.ColourMenuHelper$1
315 .........1      .........1              jalview.gui.AnnotationLabels
316 .........1      .........1              jalview.gui.AlignFrame$3
317 .........1      .........1              jalview.datamodel.features.FeatureAttributes$1
318 .........1      .........1              jalview.datamodel.features.FeatureAttributes
319 .........1      .........0              swingjs.plaf.Resizer
320 .........1      .........0              swingjs.plaf.LazyActionMap
321 .........1      .........0              swingjs.plaf.JSTabbedPaneUI.TabbedPaneLayout
322 .........1      .........0              swingjs.plaf.JSTabbedPaneUI.Handler
323 .........1      .........0              swingjs.plaf.JSScrollPaneUI.Handler
324 .........1      .........0              swingjs.plaf.JSMenuBarUI.Handler
325 .........1      .........0              swingjs.plaf.JSInternalFrameUI.Handler
326 .........1      .........0              swingjs.plaf.DefaultMenuLayout
327 .........1      .........0              swingjs.JSMouse
328 .........1      .........0              swingjs.JSFrameViewer
329 .........1      .........0              sun.java2d.StateTrackable.State[]
330 .........1      .........0              javax.swing.text.GapContent.UndoPosRef
331 .........1      .........0              javax.swing.text.GapContent.InsertUndo
332 .........1      .........0              javax.swing.plaf.basic.BasicBorders.MarginBorder
333 .........1      .........0              javax.swing.ScrollPaneLayout.UIResource
334 .........1      .........0              javax.swing.JViewport.ViewListener
335 .........1      .........0              javax.swing.JTabbedPane.ModelListener
336 .........1      .........0              javax.swing.JRootPane.RootLayout
337 .........1      .........0              javax.swing.JRootPane$1
338 .........1      .........0              javax.swing.JComponent.IntVector
339 .........1      .........0              javajs.util.AjaxURLStreamHandler
340 .........1      .........0              javajs.api.JSFunction[]
341 .........1      .........0              java.util.concurrent.locks.ReentrantReadWriteLock.WriteLock
342 .........1      .........0              java.util.concurrent.ConcurrentHashMap.KeySet
343 .........1      .........0              java.util.concurrent.ConcurrentHashMap.KeyIterator
344 .........1      .........0              java.util.LinkedHashMap.LinkedKeySet
345 .........1      .........0              java.util.LinkedHashMap.LinkedKeyIterator
346 .........1      .........0              java.util.Hashtable.ValueCollection
347 .........1      .........0              java.util.Hashtable.EntrySet
348 .........1      .........0              java.util.Collections.UnmodifiableRandomAccessList
349 .........1      .........0              java.util.Collections.SynchronizedMap
350 .........1      .........0              java.util.Collections.EmptyIterator
351 .........1      .........0              java.util.Collections.EmptyEnumeration
352 .........1      .........0              java.lang.Thread[]
353 .........1      .........0              java.awt.event.WindowEvent
354 .........1      .........0              java.awt.event.FocusEvent
355 .........1      .........0              java.awt.dnd.DropTargetContext
356 .........1      .........0              java.awt.dnd.DropTarget
357 .........1      .........0              java.awt.color.ColorSpace
358 .........1      .........0              java.awt.Rectangle[]
359 .........1      .........0              java.awt.LightweightDispatcher
360 .........1      .........0              java.awt.EventQueueItem[]
361 .........1      .........0              jalview.workers.ConsensusThread
362 .........1      .........0              jalview.workers.AlignCalcManager
363 .........1      .........0              jalview.viewmodel.styles.ViewStyle
364 .........1      .........0              jalview.viewmodel.ViewportRanges
365 .........1      .........0              jalview.util.LinkedIdentityHashSet
366 .........1      .........0              jalview.schemes.JalviewColourScheme[]
367 .........1      .........0              jalview.renderer.ResidueColourFinder
368 .........1      .........0              jalview.renderer.AnnotationRenderer
369 .........1      .........0              jalview.jbgui.GAlignFrame$98
370 .........1      .........0              jalview.jbgui.GAlignFrame$97
371 .........1      .........0              jalview.jbgui.GAlignFrame$96
372 .........1      .........0              jalview.jbgui.GAlignFrame$95
373 .........1      .........0              jalview.jbgui.GAlignFrame$94
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375 .........1      .........0              jalview.jbgui.GAlignFrame$92
376 .........1      .........0              jalview.jbgui.GAlignFrame$91
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379 .........1      .........0              jalview.jbgui.GAlignFrame$89
380 .........1      .........0              jalview.jbgui.GAlignFrame$88
381 .........1      .........0              jalview.jbgui.GAlignFrame$87
382 .........1      .........0              jalview.jbgui.GAlignFrame$86
383 .........1      .........0              jalview.jbgui.GAlignFrame$85
384 .........1      .........0              jalview.jbgui.GAlignFrame$84
385 .........1      .........0              jalview.jbgui.GAlignFrame$82
386 .........1      .........0              jalview.jbgui.GAlignFrame$81
387 .........1      .........0              jalview.jbgui.GAlignFrame$80
388 .........1      .........0              jalview.jbgui.GAlignFrame$78
389 .........1      .........0              jalview.jbgui.GAlignFrame$77
390 .........1      .........0              jalview.jbgui.GAlignFrame$76
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392 .........1      .........0              jalview.jbgui.GAlignFrame$74
393 .........1      .........0              jalview.jbgui.GAlignFrame$73
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396 .........1      .........0              jalview.jbgui.GAlignFrame$7
397 .........1      .........0              jalview.jbgui.GAlignFrame$69
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468 .........1      .........0              jalview.jbgui.GAlignFrame$10
469 .........1      .........0              jalview.io.FileFormat[]
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472 .........1      .........0              jalview.io.FileFormat$7
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486 .........1      .........0              jalview.io.FileFormat$1
487 .........1      .........0              jalview.gui.ViewSelectionMenu$1
488 .........1      .........0              jalview.gui.Desktop$13
489 .........1      .........0              jalview.gui.Desktop$12
490 .........1      .........0              jalview.gui.Desktop$11
491 .........1      .........0              jalview.gui.ColourMenuHelper$4
492 .........1      .........0              jalview.gui.AnnotationPanel.DragMode[]
493 .........1      .........0              jalview.gui.AlignmentPanel$2
494 .........1      .........0              jalview.gui.AlignmentPanel$1
495 .........1      .........0              jalview.gui.AlignFrame$5
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499 .........1      .........0              jalview.gui.AlignFrame$1
500 .........1      .........0              jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType[]
501 .........1      .........0              jalview.ext.ensembl.EnsemblGene$1$2
502 .........1      .........0              jalview.ext.ensembl.EnsemblGene$1$1
503 .........1      .........0              jalview.ext.ensembl.EnsemblGene$1
504 .........1      .........0              jalview.ext.ensembl.EnsemblFeatures
505 .........1      .........0              jalview.datamodel.features.SequenceFeatures$2
506 .........1      .........0              jalview.datamodel.features.SequenceFeatures$1
507 .........1      .........0              jalview.datamodel.features.FeatureAttributes.Datatype[]
508 .........1      .........0              jalview.datamodel.Profiles
509 .........1      .........0              jalview.datamodel.ProfileI[]
510 .........1      .........0              jalview.analysis.CrossRef
511 .........1      .........0              jalview.analysis.CodonComparator
512 .........1      .........0              jalview.analysis.AnnotationSorter.SequenceAnnotationOrder[]
513 .........1      ........-1              jalview.schemes.Consensus[]
514 ...5994529      ....111547