optimization/timing-js-chrome-bh-3.txt

   1 J2SApplet exec testApplet start applet null
   2 swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
   3 get parameter: language = null
   4 get parameter: name = testApplet
   5 get parameter: syncId = 2491377188955504
   6 JSApp initialized
   7 JSAppletViewer initializing2
   8 JSToolkit initialized
   9 JSGraphicsConfiguration initialized
  10 swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
  11 JSGraphicsEnvironment initialized
  12 swingjs.api.Interface creating instance of swingjs.JSScreenDevice
  13 JSScreenDevice initialized
  14 JSAppletViewer thread run1 mode=0 status=0
  15 JSAppletViewer thread run1 mode=1 status=1
  16 JSAppletViewer runloader
  17 get parameter: main = jalview.bin.Jalview
  18 swingjs.api.Interface creating instance of swingjs.JSApplet
  19 swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
  20 testApplet loaded
  21 JSAppletViewer thread run1 mode=1 status=76
  22 testApplet running jalview.bin.Jalview
  23 Running main(args) in class jalview.bin.Jalview
  24 Java version: 1.6-1.8
  25 null Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/71.0.3578.98 Safari/537.36 Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/71.0.3578.98 Safari/537.36
  26 JSUtil getting Java resource sun/util/resources/CalendarData.properties
  27 Processing swingjs/j2s/sun/util/resources/CalendarData.properties [1780]
  28 swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
  29 JSUtil getting Java resource sun/util/resources/CalendarData_en.properties
  30 Processing swingjs/j2s/sun/util/resources/CalendarData_en.properties [1937]
  31 swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
  32 swingjs.api.Interface creating instance of sun.text.resources.FormatData
  33 swingjs.api.Interface creating instance of sun.text.resources.FormatData_en
  34 Loading jalview properties from : https://./.jalview_properties
  35 Disabling Jalview writing to user's local properties file.
  36 Jalview Version: Test
  37 Jalview Debugging Output Follows.
  38 Getting messages for lang: en_US
  39 JSUtil getting Java resource lang/Messages.properties
  40 Processing swingjs/j2s/lang/Messages.properties [82729]
  41 JSUtil getting Java resource lang/Messages_en.properties
  42 Processing swingjs/j2s/lang/Messages_en.properties [5]
  43 JSUtil getting Java resource lang/Messages_en_US.properties
  44 Processing swingjs/j2s/lang/Messages_en_US.properties [5]
  45 JSUtil getting Java resource swingjs/jquery/j2sMenu.js
  46 Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [27197]
  47 JSWIndowUI ????
  48 JSFrameViewer creating new canvas testApplet_canvas2: 900 613
  49 JSWindowUI windowOpened true
  50 JSFrameUI windowActivated true
  51 swingjs.api.Interface creating instance of swingjs.JSGraphicsConfiguration
  52 JSGraphicsConfiguration initialized
  53 JSPopupMenuUI processing 0 _hide for testApplet_PopupMenuUI_46_46
  54 JSPopupMenuUI processing 1 _hide for testApplet_PopupMenuUI_46_46
  55 noclickout 0 1548730342022
  56 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
  57 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
  58 click added 0
  59 JSPopupMenuUI processing 2 focus for testApplet_PopupMenuUI_46_46
  60 JSPopupMenuUI processing 3 onover3 for testApplet_PopupMenuUI_46_46
  61 JSPopupMenuUI processing 4 blur for testApplet_PopupMenuUI_46_46
  62 JSPopupMenuUI processing 5 focus for testApplet_PopupMenuUI_46_46
  63 JSPopupMenuUI processing 6 onover1 for testApplet_PopupMenuUI_46_46
  64 JSPopupMenuUI processing 7 blur for testApplet_PopupMenuUI_46_46
  65 JSPopupMenuUI processing 8 focus for testApplet_PopupMenuUI_46_46
  66 JSPopupMenuUI processing 9 onover1 for testApplet_PopupMenuUI_46_46
  67 JSPopupMenuUI processing 10 blur for testApplet_PopupMenuUI_46_46
  68 JSPopupMenuUI processing 11 focus for testApplet_PopupMenuUI_46_46
  69 JSPopupMenuUI processing 12 onover1 for testApplet_PopupMenuUI_46_46
  70 JSPopupMenuUI processing 13 blur for testApplet_PopupMenuUI_46_46
  71 JSPopupMenuUI processing 14 focus for testApplet_PopupMenuUI_46_46
  72 JSPopupMenuUI processing 15 onover1 for testApplet_PopupMenuUI_46_46
  73 JSPopupMenuUI processing 16 blur for testApplet_PopupMenuUI_46_46
  74 JSPopupMenuUI processing 17 focus for testApplet_PopupMenuUI_46_46
  75 JSPopupMenuUI processing 18 onover3 for testApplet_PopupMenuUI_46_46
  76 JSPopupMenuUI processing 19 blur for testApplet_PopupMenuUI_46_46
  77 JSPopupMenuUI processing 20 focus for testApplet_PopupMenuUI_46_46
  78 JSPopupMenuUI processing 21 onover3 for testApplet_PopupMenuUI_46_46
  79 JSPopupMenuUI processing 22 blur for testApplet_PopupMenuUI_46_46
  80 JSPopupMenuUI processing 23 focus for testApplet_PopupMenuUI_46_46
  81 JSPopupMenuUI processing 24 onover1 for testApplet_PopupMenuUI_46_46
  82 JSPopupMenuUI processing 25 _hide for testApplet_PopupMenuUI_46_46
  83 JSPopupMenuUI processing 26 _closeSubmenus for testApplet_PopupMenuUI_46_46
  84 JSPopupMenuUI processing 27 blur for testApplet_PopupMenuUI_46_46
  85 JSPopupMenuUI processing 28 focus for testApplet_PopupMenuUI_46_46
  86 JSPopupMenuUI processing 29 onover1 for testApplet_PopupMenuUI_46_46
  87 JSPopupMenuUI processing 30 _hide for testApplet_PopupMenuUI_46_46
  88 JSPopupMenuUI processing 31 _closeSubmenus for testApplet_PopupMenuUI_46_46
  89 JSPopupMenuUI processing 32 blur for testApplet_PopupMenuUI_46_46
  90 JSPopupMenuUI processing 33 focus for testApplet_PopupMenuUI_46_46
  91 JSPopupMenuUI processing 34 onover3 for testApplet_PopupMenuUI_46_46
  92 JSPopupMenuUI processing 35 _hide for testApplet_PopupMenuUI_46_46
  93 JSPopupMenuUI processing 36 _closeSubmenus for testApplet_PopupMenuUI_46_46
  94 JSPopupMenuUI processing 37 blur for testApplet_PopupMenuUI_46_46
  95 JSPopupMenuUI processing 38 focus for testApplet_PopupMenuUI_46_46
  96 JSPopupMenuUI processing 39 onover1 for testApplet_PopupMenuUI_46_46
  97 JSPopupMenuUI processing 40 _hide for testApplet_PopupMenuUI_46_46
  98 JSPopupMenuUI processing 41 _closeSubmenus for testApplet_PopupMenuUI_46_46
  99 JSPopupMenuUI processing 42 blur for testApplet_PopupMenuUI_46_46
 100 JSPopupMenuUI processing 43 focus for testApplet_PopupMenuUI_46_46
 101 JSPopupMenuUI processing 44 onover3 for testApplet_PopupMenuUI_46_46
 102 JSPopupMenuUI processing 45 _hide for testApplet_PopupMenuUI_46_46
 103 JSPopupMenuUI processing 46 _closeSubmenus for testApplet_PopupMenuUI_46_46
 104 JSPopupMenuUI processing 47 blur for testApplet_PopupMenuUI_46_46
 105 JSPopupMenuUI processing 48 focus for testApplet_PopupMenuUI_46_46
 106 JSPopupMenuUI processing 49 onover1 for testApplet_PopupMenuUI_46_46
 107 JSPopupMenuUI processing 50 _hide for testApplet_PopupMenuUI_46_46
 108 JSPopupMenuUI processing 51 _closeSubmenus for testApplet_PopupMenuUI_46_46
 109 JSPopupMenuUI processing 52 blur for testApplet_PopupMenuUI_46_46
 110 JSPopupMenuUI processing 53 focus for testApplet_PopupMenuUI_46_46
 111 JSPopupMenuUI processing 54 onover1 for testApplet_PopupMenuUI_46_46
 112 JSPopupMenuUI processing 55 _hide for testApplet_PopupMenuUI_46_46
 113 JSPopupMenuUI processing 56 _closeSubmenus for testApplet_PopupMenuUI_46_46
 114 JSPopupMenuUI processing 57 blur for testApplet_PopupMenuUI_46_46
 115 JSPopupMenuUI processing 58 focus for testApplet_PopupMenuUI_46_46
 116 JSPopupMenuUI processing 59 onover1 for testApplet_PopupMenuUI_46_46
 117 JSPopupMenuUI processing 60 _hide for testApplet_PopupMenuUI_46_46
 118 JSPopupMenuUI processing 61 _closeSubmenus for testApplet_PopupMenuUI_46_46
 119 JSPopupMenuUI processing 62 blur for testApplet_PopupMenuUI_46_46
 120 JSPopupMenuUI processing 63 focus for testApplet_PopupMenuUI_46_46
 121 JSPopupMenuUI processing 64 onover1 for testApplet_PopupMenuUI_46_46
 122 JSPopupMenuUI processing 65 _hide for testApplet_PopupMenuUI_46_46
 123 JSPopupMenuUI processing 66 _closeSubmenus for testApplet_PopupMenuUI_46_46
 124 JSPopupMenuUI processing 67 blur for testApplet_PopupMenuUI_46_46
 125 JSPopupMenuUI processing 68 focus for testApplet_PopupMenuUI_46_46
 126 JSPopupMenuUI processing 69 onover1 for testApplet_PopupMenuUI_46_46
 127 JSPopupMenuUI processing 70 _hide for testApplet_PopupMenuUI_46_46
 128 JSPopupMenuUI processing 71 _closeSubmenus for testApplet_PopupMenuUI_46_46
 129 JSPopupMenuUI processing 72 blur for testApplet_PopupMenuUI_46_46
 130 JSPopupMenuUI processing 73 focus for testApplet_PopupMenuUI_46_46
 131 JSPopupMenuUI processing 74 onover1 for testApplet_PopupMenuUI_46_46
 132 JSPopupMenuUI processing 75 _hide for testApplet_PopupMenuUI_46_46
 133 JSPopupMenuUI processing 76 _closeSubmenus for testApplet_PopupMenuUI_46_46
 134 JSPopupMenuUI processing 77 blur for testApplet_PopupMenuUI_46_46
 135 JSPopupMenuUI processing 78 focus for testApplet_PopupMenuUI_46_46
 136 JSPopupMenuUI processing 79 onover1 for testApplet_PopupMenuUI_46_46
 137 JSPopupMenuUI processing 80 onpress for testApplet_PopupMenuUI_46_46
 138 JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.css
 139 Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.css [24188]
 140 JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.js
 141 Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.js [22356]
 142 JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
 143 JSWIndowUI ????
 144 collapseAll 0
 145 JSPopupMenuUI processing 81 collapseAll for testApplet_PopupMenuUI_46_46
 146 JSPopupMenuUI processing 82 select for testApplet_PopupMenuUI_46_46
 147 collapseAll 0
 148 JSPopupMenuUI processing 83 collapseAll for testApplet_PopupMenuUI_46_46
 149 JSPopupMenuUI processing 84 onclick for testApplet_PopupMenuUI_46_46
 150 click removed 0
 151 JSFrameViewer creating new canvas testApplet_canvas3: 400 230
 152 JSWindowUI windowOpened true
 153 click removed 0
 154 JSFrameUI windowActivated true
 155 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 156 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 157 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 158 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 159 Platform: timer mark    0.0    0.0    Desktop Fetching 1 sequence queries from ENSEMBL
 160 Platform: timer mark    0.708    0.676    EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json
 161 Platform: timer mark    0.861    0.145    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 162 Platform: timer mark    0.997    0.135    EnsembleRestClient.getJSON https://rest.ensembl.org/info/rest?content-type=application/json
 163 EnsemblRestClient expected ENSEMBL REST version 7.0 but found 9.0, see https://github.com/Ensembl/ensembl-rest/wiki/Change-log
 164 Platform: timer mark    1.151    0.136    EnsembleRestClient.getJSON https://rest.ensembl.org/info/data?content-type=application/json
 165 Platform: timer mark    1.153    0.002    EnsemblSeqProx.fetchSeq
 166 Platform: timer mark    1.153    0.0    ENS seqproxy
 167 Platform: timer mark    2.374    1.22    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENSG00000157764?type=genomic&Accept=application/json&content-type=application/json&object_type=Gene
 168 Platform: timer mark    2.468    0.094    ENS seqproxy2
 169 Platform: timer mark    2.564    0.096    ESP.getsequencerec1
 170 Platform: timer mark    14.377    11.8    EnsembleRestClient.getJSON https://rest.ensembl.org/overlap/id/ENSG00000157764?content-type=application/json&object_type=Gene&feature=gene&feature=transcript&feature=exon&feature=cds&feature=variation
 171 Platform: timer mark    19.553    5.176    ESP.getsequencerec2
 172 Platform: timer mark    19.579    0.026    ESP. xfer 46594
 173 Platform: timer mark    25.302    5.723    ESP.transferFeatures
 174 Platform: timer mark    25.302    0.0    ESP.addfeat done
 175 Platform: timer mark    25.303    0.001    ESP. getdataseq
 176 Platform: timer mark    25.303    0.0    ESP. getxref
 177 Platform: timer mark    26.69    1.382    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSG00000157764?content-type=application/json&all_levels=1
 178 Platform: timer mark    26.712    0.022    ESP. seqprox done
 179 Platform: timer mark    26.862    0.148    EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json&object_type=Gene
 180 Platform: timer mark    27.648    0.786    ESP. getdataseq
 181 Platform: timer mark    27.65    0.002    ESP. getxref
 182 Platform: timer mark    28.252    0.602    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646891?content-type=application/json&all_levels=1
 183 Platform: timer mark    28.257    0.005    ESP. seqprox done
 184 Adding protein product for ENST00000646891
 185 Platform: timer mark    28.541    0.279    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 186 Platform: timer mark    28.541    0.0    EnsemblSeqProx.fetchSeq
 187 Platform: timer mark    28.542    0.001    ENS seqproxy
 188 Platform: timer mark    28.726    0.183    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646891?type=protein&Accept=application/json&content-type=application/json
 189 Platform: timer mark    28.727    0.001    ENS seqproxy2
 190 Platform: timer mark    28.728    0.001    ESP. getdataseq
 191 Platform: timer mark    28.729    0.001    ESP. getxref
 192 Platform: timer mark    29.058    0.327    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493543?content-type=application/json&all_levels=1
 193 Platform: timer mark    29.061    0.003    ESP. seqprox done
 194 Platform: timer mark    29.742    0.681    ESP. getdataseq
 195 Platform: timer mark    29.742    0.0    ESP. getxref
 196 Platform: timer mark    30.018    0.275    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000496384?content-type=application/json&all_levels=1
 197 Platform: timer mark    30.019    0.001    ESP. seqprox done
 198 Adding protein product for ENST00000496384
 199 Platform: timer mark    30.02    0.001    EnsemblSeqProx.fetchSeq
 200 Platform: timer mark    30.02    0.0    ENS seqproxy
 201 Platform: timer mark    30.199    0.178    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000496384?type=protein&Accept=application/json&content-type=application/json
 202 Platform: timer mark    30.2    0.001    ENS seqproxy2
 203 Platform: timer mark    30.201    0.001    ESP. getdataseq
 204 Platform: timer mark    30.201    0.0    ESP. getxref
 205 Platform: timer mark    30.362    0.16    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000419060?content-type=application/json&all_levels=1
 206 Platform: timer mark    30.364    0.002    ESP. seqprox done
 207 Platform: timer mark    30.807    0.443    ESP. getdataseq
 208 Platform: timer mark    30.808    0.001    ESP. getxref
 209 Platform: timer mark    30.982    0.174    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000469930?content-type=application/json&all_levels=1
 210 Platform: timer mark    30.983    0.001    ESP. seqprox done
 211 Adding protein product for ENST00000469930
 212 Platform: timer mark    30.984    0.001    EnsemblSeqProx.fetchSeq
 213 Platform: timer mark    30.985    0.001    ENS seqproxy
 214 Platform: timer mark    31.148    0.163    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000469930?type=protein&Accept=application/json&content-type=application/json
 215 Platform: timer mark    31.149    0.001    ENS seqproxy2
 216 Platform: timer mark    31.149    0.0    ESP. getdataseq
 217 Platform: timer mark    31.15    0.001    ESP. getxref
 218 Platform: timer mark    31.297    0.146    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495858?content-type=application/json&all_levels=1
 219 Platform: timer mark    31.299    0.002    ESP. seqprox done
 220 Platform: timer mark    31.777    0.478    ESP. getdataseq
 221 Platform: timer mark    31.777    0.0    ESP. getxref
 222 Platform: timer mark    31.959    0.181    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000288602?content-type=application/json&all_levels=1
 223 Platform: timer mark    31.961    0.002    ESP. seqprox done
 224 Adding protein product for ENST00000288602
 225 Platform: timer mark    31.961    0.0    EnsemblSeqProx.fetchSeq
 226 Platform: timer mark    31.962    0.001    ENS seqproxy
 227 Platform: timer mark    32.171    0.208    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000288602?type=protein&Accept=application/json&content-type=application/json
 228 Platform: timer mark    32.173    0.002    ENS seqproxy2
 229 Platform: timer mark    32.173    0.0    ESP. getdataseq
 230 Platform: timer mark    32.175    0.002    ESP. getxref
 231 Platform: timer mark    32.324    0.149    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000288602?content-type=application/json&all_levels=1
 232 Platform: timer mark    32.326    0.002    ESP. seqprox done
 233 Platform: timer mark    32.775    0.449    ESP. getdataseq
 234 Platform: timer mark    32.775    0.0    ESP. getxref
 235 Platform: timer mark    32.929    0.152    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642272?content-type=application/json&all_levels=1
 236 Platform: timer mark    32.93    0.001    ESP. seqprox done
 237 Adding protein product for ENST00000642272
 238 Platform: timer mark    32.932    0.002    EnsemblSeqProx.fetchSeq
 239 Platform: timer mark    32.932    0.0    ENS seqproxy
 240 Response code 400
 241 Platform: timer mark    33.086    0.153    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642272?type=protein&Accept=application/json&content-type=application/json
 242 No protein product found for ENST00000642272
 243 Platform: timer mark    33.48    0.394    ESP. getdataseq
 244 Platform: timer mark    33.481    0.001    ESP. getxref
 245 Platform: timer mark    33.883    0.402    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643790?content-type=application/json&all_levels=1
 246 Platform: timer mark    33.884    0.001    ESP. seqprox done
 247 Adding protein product for ENST00000643790
 248 Platform: timer mark    33.885    0.001    EnsemblSeqProx.fetchSeq
 249 Platform: timer mark    33.885    0.0    ENS seqproxy
 250 Response code 400
 251 Platform: timer mark    34.069    0.183    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643790?type=protein&Accept=application/json&content-type=application/json
 252 No protein product found for ENST00000643790
 253 Platform: timer mark    34.476    0.407    ESP. getdataseq
 254 Platform: timer mark    34.478    0.002    ESP. getxref
 255 Platform: timer mark    34.866    0.388    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646427?content-type=application/json&all_levels=1
 256 Platform: timer mark    34.867    0.001    ESP. seqprox done
 257 Adding protein product for ENST00000646427
 258 Platform: timer mark    34.869    0.002    EnsemblSeqProx.fetchSeq
 259 Platform: timer mark    34.869    0.0    ENS seqproxy
 260 Response code 400
 261 Platform: timer mark    35.056    0.186    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646427?type=protein&Accept=application/json&content-type=application/json
 262 No protein product found for ENST00000646427
 263 Platform: timer mark    35.448    0.392    ESP. getdataseq
 264 Platform: timer mark    35.449    0.001    ESP. getxref
 265 Platform: timer mark    35.836    0.386    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642808?content-type=application/json&all_levels=1
 266 Platform: timer mark    35.836    0.0    ESP. seqprox done
 267 Adding protein product for ENST00000642808
 268 Platform: timer mark    35.838    0.002    EnsemblSeqProx.fetchSeq
 269 Platform: timer mark    35.838    0.0    ENS seqproxy
 270 Response code 400
 271 Platform: timer mark    35.986    0.147    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642808?type=protein&Accept=application/json&content-type=application/json
 272 No protein product found for ENST00000642808
 273 Platform: timer mark    36.376    0.39    ESP. getdataseq
 274 Platform: timer mark    36.377    0.001    ESP. getxref
 275 Platform: timer mark    36.76    0.383    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643356?content-type=application/json&all_levels=1
 276 Platform: timer mark    36.761    0.001    ESP. seqprox done
 277 Adding protein product for ENST00000643356
 278 Platform: timer mark    36.762    0.001    EnsemblSeqProx.fetchSeq
 279 Platform: timer mark    36.763    0.001    ENS seqproxy
 280 Response code 400
 281 Platform: timer mark    36.931    0.167    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643356?type=protein&Accept=application/json&content-type=application/json
 282 No protein product found for ENST00000643356
 283 Platform: timer mark    37.389    0.458    ESP. getdataseq
 284 Platform: timer mark    37.39    0.001    ESP. getxref
 285 Platform: timer mark    37.783    0.393    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000497784?content-type=application/json&all_levels=1
 286 Platform: timer mark    37.785    0.002    ESP. seqprox done
 287 Adding protein product for ENST00000497784
 288 Platform: timer mark    37.786    0.001    EnsemblSeqProx.fetchSeq
 289 Platform: timer mark    37.787    0.001    ENS seqproxy
 290 Platform: timer mark    37.963    0.175    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000497784?type=protein&Accept=application/json&content-type=application/json
 291 Platform: timer mark    37.965    0.002    ENS seqproxy2
 292 Platform: timer mark    37.966    0.001    ESP. getdataseq
 293 Platform: timer mark    37.966    0.0    ESP. getxref
 294 Platform: timer mark    38.133    0.166    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000420119?content-type=application/json&all_levels=1
 295 Platform: timer mark    38.134    0.001    ESP. seqprox done
 296 Platform: timer mark    38.548    0.414    ESP. getdataseq
 297 Platform: timer mark    38.549    0.001    ESP. getxref
 298 Platform: timer mark    38.688    0.138    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646334?content-type=application/json&all_levels=1
 299 Platform: timer mark    38.689    0.001    ESP. seqprox done
 300 Adding protein product for ENST00000646334
 301 Platform: timer mark    38.829    0.139    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 302 Platform: timer mark    38.83    0.001    EnsemblSeqProx.fetchSeq
 303 Platform: timer mark    38.831    0.001    ENS seqproxy
 304 Response code 400
 305 Platform: timer mark    39.007    0.175    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646334?type=protein&Accept=application/json&content-type=application/json
 306 No protein product found for ENST00000646334
 307 Platform: timer mark    39.468    0.461    ESP. getdataseq
 308 Platform: timer mark    39.469    0.001    ESP. getxref
 309 Platform: timer mark    39.876    0.406    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646730?content-type=application/json&all_levels=1
 310 Platform: timer mark    39.877    0.001    ESP. seqprox done
 311 Adding protein product for ENST00000646730
 312 Platform: timer mark    39.878    0.001    EnsemblSeqProx.fetchSeq
 313 Platform: timer mark    39.879    0.001    ENS seqproxy
 314 Platform: timer mark    40.062    0.182    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646730?type=protein&Accept=application/json&content-type=application/json
 315 Platform: timer mark    40.063    0.001    ENS seqproxy2
 316 Platform: timer mark    40.064    0.001    ESP. getdataseq
 317 Platform: timer mark    40.065    0.001    ESP. getxref
 318 Platform: timer mark    40.233    0.167    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000494784?content-type=application/json&all_levels=1
 319 Platform: timer mark    40.234    0.001    ESP. seqprox done
 320 Platform: timer mark    40.685    0.451    ESP. getdataseq
 321 Platform: timer mark    40.686    0.001    ESP. getxref
 322 Platform: timer mark    40.861    0.174    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644650?content-type=application/json&all_levels=1
 323 Platform: timer mark    40.862    0.001    ESP. seqprox done
 324 Adding protein product for ENST00000644650
 325 Platform: timer mark    40.864    0.002    EnsemblSeqProx.fetchSeq
 326 Platform: timer mark    40.865    0.001    ENS seqproxy
 327 Platform: timer mark    41.022    0.156    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644650?type=protein&Accept=application/json&content-type=application/json
 328 Platform: timer mark    41.024    0.002    ENS seqproxy2
 329 Platform: timer mark    41.025    0.001    ESP. getdataseq
 330 Platform: timer mark    41.025    0.0    ESP. getxref
 331 Platform: timer mark    41.288    0.262    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493783?content-type=application/json&all_levels=1
 332 Platform: timer mark    41.29    0.002    ESP. seqprox done
 333 Error retrieving protein for ENST00000644650: Index: -1, Size: 1
 334 Platform: timer mark    41.854    0.564    ESP. getdataseq
 335 Platform: timer mark    41.855    0.001    ESP. getxref
 336 Platform: timer mark    42.028    0.172    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000647434?content-type=application/json&all_levels=1
 337 Platform: timer mark    42.03    0.002    ESP. seqprox done
 338 Adding protein product for ENST00000647434
 339 Platform: timer mark    42.032    0.002    EnsemblSeqProx.fetchSeq
 340 Platform: timer mark    42.033    0.001    ENS seqproxy
 341 Platform: timer mark    42.214    0.18    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000647434?type=protein&Accept=application/json&content-type=application/json
 342 Platform: timer mark    42.215    0.001    ENS seqproxy2
 343 Platform: timer mark    42.216    0.001    ESP. getdataseq
 344 Platform: timer mark    42.218    0.002    ESP. getxref
 345 Platform: timer mark    42.386    0.168    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495132?content-type=application/json&all_levels=1
 346 Platform: timer mark    42.387    0.001    ESP. seqprox done
 347 Platform: timer mark    43.127    0.74    ESP. getdataseq
 348 Platform: timer mark    43.128    0.001    ESP. getxref
 349 Platform: timer mark    43.301    0.172    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000479537?content-type=application/json&all_levels=1
 350 Platform: timer mark    43.302    0.001    ESP. seqprox done
 351 Adding protein product for ENST00000479537
 352 Platform: timer mark    43.305    0.003    EnsemblSeqProx.fetchSeq
 353 Platform: timer mark    43.305    0.0    ENS seqproxy
 354 Platform: timer mark    43.517    0.211    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000479537?type=protein&Accept=application/json&content-type=application/json
 355 Platform: timer mark    43.518    0.001    ENS seqproxy2
 356 Platform: timer mark    43.52    0.002    ESP. getdataseq
 357 Platform: timer mark    43.521    0.001    ESP. getxref
 358 Platform: timer mark    43.682    0.161    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000418033?content-type=application/json&all_levels=1
 359 Platform: timer mark    43.683    0.001    ESP. seqprox done
 360 Error retrieving protein for ENST00000479537: Index: -1, Size: 1
 361 Platform: timer mark    44.125    0.442    ESP. getdataseq
 362 Platform: timer mark    44.126    0.001    ESP. getxref
 363 Platform: timer mark    44.274    0.147    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000645443?content-type=application/json&all_levels=1
 364 Platform: timer mark    44.276    0.002    ESP. seqprox done
 365 Adding protein product for ENST00000645443
 366 Platform: timer mark    44.277    0.001    EnsemblSeqProx.fetchSeq
 367 Platform: timer mark    44.278    0.001    ENS seqproxy
 368 Response code 400
 369 Platform: timer mark    44.425    0.146    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000645443?type=protein&Accept=application/json&content-type=application/json
 370 No protein product found for ENST00000645443
 371 Platform: timer mark    44.955    0.53    ESP. getdataseq
 372 Platform: timer mark    44.955    0.0    ESP. getxref
 373 Platform: timer mark    45.389    0.432    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644905?content-type=application/json&all_levels=1
 374 Platform: timer mark    45.39    0.001    ESP. seqprox done
 375 Adding protein product for ENST00000644905
 376 Platform: timer mark    45.393    0.003    EnsemblSeqProx.fetchSeq
 377 Platform: timer mark    45.393    0.0    ENS seqproxy
 378 Response code 400
 379 Platform: timer mark    45.541    0.146    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644905?type=protein&Accept=application/json&content-type=application/json
 380 No protein product found for ENST00000644905
 381 Platform: timer mark    46.111    0.57    ESP. getdataseq
 382 Platform: timer mark    46.112    0.001    ESP. getxref
 383 Platform: timer mark    46.535    0.422    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642228?content-type=application/json&all_levels=1
 384 Platform: timer mark    46.537    0.002    ESP. seqprox done
 385 Adding protein product for ENST00000642228
 386 Platform: timer mark    46.539    0.002    EnsemblSeqProx.fetchSeq
 387 Platform: timer mark    46.54    0.001    ENS seqproxy
 388 Platform: timer mark    46.708    0.168    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642228?type=protein&Accept=application/json&content-type=application/json
 389 Platform: timer mark    46.71    0.002    ENS seqproxy2
 390 Platform: timer mark    46.711    0.001    ESP. getdataseq
 391 Platform: timer mark    46.712    0.001    ESP. getxref
 392 Platform: timer mark    46.883    0.171    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493678?content-type=application/json&all_levels=1
 393 Platform: timer mark    46.884    0.001    ESP. seqprox done
 394 Platform: timer mark    47.421    0.537    ESP. getdataseq
 395 Platform: timer mark    47.421    0.0    ESP. getxref
 396 Platform: timer mark    47.599    0.176    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644969?content-type=application/json&all_levels=1
 397 Platform: timer mark    47.6    0.001    ESP. seqprox done
 398 Adding protein product for ENST00000644969
 399 Platform: timer mark    47.602    0.002    EnsemblSeqProx.fetchSeq
 400 Platform: timer mark    47.603    0.001    ENS seqproxy
 401 Platform: timer mark    47.781    0.176    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644969?type=protein&Accept=application/json&content-type=application/json
 402 Platform: timer mark    47.782    0.001    ENS seqproxy2
 403 Platform: timer mark    47.785    0.003    ESP. getdataseq
 404 Platform: timer mark    47.786    0.001    ESP. getxref
 405 Platform: timer mark    47.94    0.154    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000496776?content-type=application/json&all_levels=1
 406 Platform: timer mark    47.941    0.001    ESP. seqprox done
 407 Platform: timer mark    48.435    0.494    ESP. getdataseq
 408 Platform: timer mark    48.436    0.001    ESP. getxref
 409 Platform: timer mark    48.577    0.14    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644120?content-type=application/json&all_levels=1
 410 Platform: timer mark    48.579    0.002    ESP. seqprox done
 411 Adding protein product for ENST00000644120
 412 Platform: timer mark    48.58    0.001    EnsemblSeqProx.fetchSeq
 413 Platform: timer mark    48.581    0.001    ENS seqproxy
 414 Response code 400
 415 Platform: timer mark    48.755    0.173    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644120?type=protein&Accept=application/json&content-type=application/json
 416 No protein product found for ENST00000644120
 417 Platform: timer mark    49.205    0.45    ESP. getdataseq
 418 Platform: timer mark    49.206    0.001    ESP. getxref
 419 Platform: timer mark    49.588    0.38    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642875?content-type=application/json&all_levels=1
 420 Platform: timer mark    49.589    0.001    ESP. seqprox done
 421 Adding protein product for ENST00000642875
 422 Platform: timer mark    49.74    0.149    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 423 Platform: timer mark    49.741    0.001    EnsemblSeqProx.fetchSeq
 424 Platform: timer mark    49.742    0.001    ENS seqproxy
 425 Response code 400
 426 Platform: timer mark    49.894    0.15    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642875?type=protein&Accept=application/json&content-type=application/json
 427 No protein product found for ENST00000642875
 428 Platform: timer mark    50.194    0.3    Desktop Finished querying
 429 Platform: timer mark    50.199    0.005    Desktop Parsing results.
 430 JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
 431 JSWIndowUI ????
 432 Platform: timer mark    63.835    13.636    Desktop null
 433 JSFrameViewer creating new canvas testApplet_canvas4: 700 465
 434 JSWindowUI windowOpened true
 435 JSFrameUI windowActivated true
 436 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 437 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 438 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 439 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 440 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 441 JSWIndowUI ????
 442 JSFrameViewer creating new canvas testApplet_canvas5: 173 18
 443 JSWIndowUI ????
 444 JSFrameViewer creating new canvas testApplet_canvas6: 138 18
 445 This is System.out. clear it
 446 Add ?j2snocore to URL to see full class list; ?j2sdebug to use uncompressed j2s/core files
 447 get _j2sClassList.txt Jalview TestX
 448 New Sequence FetcherX
 449 ExampleClearOKCancel
 450
 451 ENSG00000157764
 452 Example query: ENSG00000157764
 453 Enter one or more accession IDs separated by a semi-colon ";"
 454 Replace commas with semi-colons
 455 Retrieved from ENSEMBLX
 456 Sequence 1 ID: ENSG00000157764 Nucleotide: Cytosine (32)
 457 File
 458 Edit
 459 Select
 460 View
 461 Annotations
 462 Format
 463 Colour
 464 Calculate
 465 File
 466 Tools
 467 Help
 468 Window