optimization/timing-js-firefox-bh-3.txt

   1 firefox back to Java's StringBuilder - 100 sec
   2 J2SApplet exec testApplet start applet null
   3 swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
   4 get parameter: language = null
   5 get parameter: name = testApplet
   6 get parameter: syncId = 30614127558744375
   7 JSApp initialized
   8 JSAppletViewer initializing2
   9 JSToolkit initialized
  10 JSGraphicsConfiguration initialized
  11 swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
  12 JSGraphicsEnvironment initialized
  13 swingjs.api.Interface creating instance of swingjs.JSScreenDevice
  14 JSScreenDevice initialized
  15 JSAppletViewer thread run1 mode=0 status=0
  16 JSAppletViewer thread run1 mode=1 status=1
  17 JSAppletViewer runloader
  18 get parameter: main = jalview.bin.Jalview
  19 swingjs.api.Interface creating instance of swingjs.JSApplet
  20 swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
  21 testApplet loaded
  22 JSAppletViewer thread run1 mode=1 status=76
  23 testApplet running jalview.bin.Jalview
  24 Running main(args) in class jalview.bin.Jalview
  25 Java version: 1.6-1.8
  26 null Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:64.0) Gecko/20100101 Firefox/64.0 Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:64.0) Gecko/20100101 Firefox/64.0
  27 JSUtil getting Java resource sun/util/resources/CalendarData.properties
  28 Processing swingjs/j2s/sun/util/resources/CalendarData.properties [1780]
  29 swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
  30 JSUtil getting Java resource sun/util/resources/CalendarData_en.properties
  31 Processing swingjs/j2s/sun/util/resources/CalendarData_en.properties [1937]
  32 swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
  33 swingjs.api.Interface creating instance of sun.text.resources.FormatData
  34 swingjs.api.Interface creating instance of sun.text.resources.FormatData_en
  35 Loading jalview properties from : https://./.jalview_properties
  36 Disabling Jalview writing to user's local properties file.
  37 Jalview Version: Test
  38 Jalview Debugging Output Follows.
  39 Getting messages for lang: en_US
  40 JSUtil getting Java resource lang/Messages.properties
  41 Processing swingjs/j2s/lang/Messages.properties [82729]
  42 JSUtil getting Java resource lang/Messages_en.properties
  43 Processing swingjs/j2s/lang/Messages_en.properties [39]
  44 JSUtil getting Java resource lang/Messages_en_US.properties
  45 Processing swingjs/j2s/lang/Messages_en_US.properties [39]
  46 JSUtil getting Java resource swingjs/jquery/j2sMenu.js
  47 Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [27197]
  48 JSWIndowUI ????
  49 JSFrameViewer creating new canvas testApplet_canvas2: 900 613
  50 JSWindowUI windowOpened true
  51 JSFrameUI windowActivated true
  52 swingjs.api.Interface creating instance of swingjs.JSGraphicsConfiguration
  53 JSGraphicsConfiguration initialized
  54 JSPopupMenuUI processing 0 _hide for testApplet_PopupMenuUI_46_46
  55 JSPopupMenuUI processing 1 _hide for testApplet_PopupMenuUI_46_46
  56 noclickout 0 1548730538973
  57 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
  58 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
  59 click added 0
  60 JSPopupMenuUI processing 2 focus for testApplet_PopupMenuUI_46_46
  61 JSPopupMenuUI processing 3 onover1 for testApplet_PopupMenuUI_46_46
  62 JSPopupMenuUI processing 4 blur for testApplet_PopupMenuUI_46_46
  63 JSPopupMenuUI processing 5 focus for testApplet_PopupMenuUI_46_46
  64 JSPopupMenuUI processing 6 onover1 for testApplet_PopupMenuUI_46_46
  65 JSPopupMenuUI processing 7 _hide for testApplet_PopupMenuUI_46_46
  66 JSPopupMenuUI processing 8 _closeSubmenus for testApplet_PopupMenuUI_46_46
  67 JSPopupMenuUI processing 9 blur for testApplet_PopupMenuUI_46_46
  68 JSPopupMenuUI processing 10 focus for testApplet_PopupMenuUI_46_46
  69 JSPopupMenuUI processing 11 onover1 for testApplet_PopupMenuUI_46_46
  70 JSPopupMenuUI processing 12 _hide for testApplet_PopupMenuUI_46_46
  71 JSPopupMenuUI processing 13 _closeSubmenus for testApplet_PopupMenuUI_46_46
  72 JSPopupMenuUI processing 14 blur for testApplet_PopupMenuUI_46_46
  73 JSPopupMenuUI processing 15 focus for testApplet_PopupMenuUI_46_46
  74 JSPopupMenuUI processing 16 onover3 for testApplet_PopupMenuUI_46_46
  75 JSPopupMenuUI processing 17 _hide for testApplet_PopupMenuUI_46_46
  76 JSPopupMenuUI processing 18 _closeSubmenus for testApplet_PopupMenuUI_46_46
  77 JSPopupMenuUI processing 19 blur for testApplet_PopupMenuUI_46_46
  78 JSPopupMenuUI processing 20 focus for testApplet_PopupMenuUI_46_46
  79 JSPopupMenuUI processing 21 onover1 for testApplet_PopupMenuUI_46_46
  80 JSPopupMenuUI processing 22 _hide for testApplet_PopupMenuUI_46_46
  81 JSPopupMenuUI processing 23 _closeSubmenus for testApplet_PopupMenuUI_46_46
  82 JSPopupMenuUI processing 24 blur for testApplet_PopupMenuUI_46_46
  83 JSPopupMenuUI processing 25 focus for testApplet_PopupMenuUI_46_46
  84 JSPopupMenuUI processing 26 onover1 for testApplet_PopupMenuUI_46_46
  85 JSPopupMenuUI processing 27 _hide for testApplet_PopupMenuUI_46_46
  86 JSPopupMenuUI processing 28 _closeSubmenus for testApplet_PopupMenuUI_46_46
  87 JSPopupMenuUI processing 29 blur for testApplet_PopupMenuUI_46_46
  88 JSPopupMenuUI processing 30 focus for testApplet_PopupMenuUI_46_46
  89 JSPopupMenuUI processing 31 onover1 for testApplet_PopupMenuUI_46_46
  90 JSPopupMenuUI processing 32 _hide for testApplet_PopupMenuUI_46_46
  91 JSPopupMenuUI processing 33 _closeSubmenus for testApplet_PopupMenuUI_46_46
  92 JSPopupMenuUI processing 34 blur for testApplet_PopupMenuUI_46_46
  93 JSPopupMenuUI processing 35 focus for testApplet_PopupMenuUI_46_46
  94 JSPopupMenuUI processing 36 onover1 for testApplet_PopupMenuUI_46_46
  95 JSPopupMenuUI processing 37 _hide for testApplet_PopupMenuUI_46_46
  96 JSPopupMenuUI processing 38 _closeSubmenus for testApplet_PopupMenuUI_46_46
  97 JSPopupMenuUI processing 39 blur for testApplet_PopupMenuUI_46_46
  98 JSPopupMenuUI processing 40 focus for testApplet_PopupMenuUI_46_46
  99 JSPopupMenuUI processing 41 onover1 for testApplet_PopupMenuUI_46_46
 100 JSPopupMenuUI processing 42 _hide for testApplet_PopupMenuUI_46_46
 101 JSPopupMenuUI processing 43 _closeSubmenus for testApplet_PopupMenuUI_46_46
 102 JSPopupMenuUI processing 44 blur for testApplet_PopupMenuUI_46_46
 103 JSPopupMenuUI processing 45 focus for testApplet_PopupMenuUI_46_46
 104 JSPopupMenuUI processing 46 onover1 for testApplet_PopupMenuUI_46_46
 105 JSPopupMenuUI processing 47 _hide for testApplet_PopupMenuUI_46_46
 106 JSPopupMenuUI processing 48 _closeSubmenus for testApplet_PopupMenuUI_46_46
 107 JSPopupMenuUI processing 49 blur for testApplet_PopupMenuUI_46_46
 108 JSPopupMenuUI processing 50 focus for testApplet_PopupMenuUI_46_46
 109 JSPopupMenuUI processing 51 onover1 for testApplet_PopupMenuUI_46_46
 110 JSPopupMenuUI processing 52 _hide for testApplet_PopupMenuUI_46_46
 111 JSPopupMenuUI processing 53 _closeSubmenus for testApplet_PopupMenuUI_46_46
 112 JSPopupMenuUI processing 54 blur for testApplet_PopupMenuUI_46_46
 113 JSPopupMenuUI processing 55 focus for testApplet_PopupMenuUI_46_46
 114 JSPopupMenuUI processing 56 onover1 for testApplet_PopupMenuUI_46_46
 115 JSPopupMenuUI processing 57 onpress for testApplet_PopupMenuUI_46_46
 116 JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.css
 117 Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.css [24188]
 118 JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.js
 119 Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.js [22356]
 120 JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
 121 JSWIndowUI ????
 122 collapseAll 0
 123 JSPopupMenuUI processing 58 collapseAll for testApplet_PopupMenuUI_46_46
 124 JSPopupMenuUI processing 59 select for testApplet_PopupMenuUI_46_46
 125 collapseAll 0
 126 JSPopupMenuUI processing 60 collapseAll for testApplet_PopupMenuUI_46_46
 127 JSPopupMenuUI processing 61 onclick for testApplet_PopupMenuUI_46_46
 128 click removed 0
 129 JSFrameViewer creating new canvas testApplet_canvas3: 400 230
 130 JSWindowUI windowOpened true
 131 click removed 0
 132 JSFrameUI windowActivated true
 133 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 134 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 135 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 136 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 137 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 138 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
 139 Platform: timer mark    0.0    0.0    Desktop Fetching 1 sequence queries from ENSEMBL
 140 Platform: timer mark    0.491    0.432    EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json
 141 Platform: timer mark    0.655    0.157    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 142 Platform: timer mark    0.816    0.159    EnsembleRestClient.getJSON https://rest.ensembl.org/info/rest?content-type=application/json
 143 EnsemblRestClient expected ENSEMBL REST version 7.0 but found 9.0, see https://github.com/Ensembl/ensembl-rest/wiki/Change-log
 144 Platform: timer mark    0.967    0.134    EnsembleRestClient.getJSON https://rest.ensembl.org/info/data?content-type=application/json
 145 Platform: timer mark    0.968    0.001    EnsemblSeqProx.fetchSeq
 146 Platform: timer mark    0.969    0.001    ENS seqproxy
 147 Platform: timer mark    1.946    0.975    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENSG00000157764?type=genomic&Accept=application/json&content-type=application/json&object_type=Gene
 148 Platform: timer mark    1.994    0.048    ENS seqproxy2
 149 Platform: timer mark    2.173    0.179    ESP.getsequencerec1
 150 Platform: timer mark    13.687    11.512    EnsembleRestClient.getJSON https://rest.ensembl.org/overlap/id/ENSG00000157764?content-type=application/json&object_type=Gene&feature=gene&feature=transcript&feature=exon&feature=cds&feature=variation
 151 Platform: timer mark    26.028    12.341    ESP.getsequencerec2
 152 Platform: timer mark    26.069    0.041    ESP. xfer 46594
 153 Platform: timer mark    43.878    17.809    ESP.transferFeatures
 154 Platform: timer mark    43.878    0.0    ESP.addfeat done
 155 Platform: timer mark    43.879    0.001    ESP. getdataseq
 156 Platform: timer mark    43.88    0.001    ESP. getxref
 157 Platform: timer mark    45.354    1.467    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSG00000157764?content-type=application/json&all_levels=1
 158 Platform: timer mark    45.388    0.034    ESP. seqprox done
 159 Platform: timer mark    45.556    0.166    EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json&object_type=Gene
 160 Platform: timer mark    47.029    1.473    ESP. getdataseq
 161 Platform: timer mark    47.029    0.0    ESP. getxref
 162 Platform: timer mark    47.63    0.599    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646891?content-type=application/json&all_levels=1
 163 Platform: timer mark    47.642    0.012    ESP. seqprox done
 164 Adding protein product for ENST00000646891
 165 Platform: timer mark    47.822    0.171    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 166 Platform: timer mark    47.823    0.001    EnsemblSeqProx.fetchSeq
 167 Platform: timer mark    47.823    0.0    ENS seqproxy
 168 Platform: timer mark    47.998    0.174    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646891?type=protein&Accept=application/json&content-type=application/json
 169 Platform: timer mark    48.0    0.002    ENS seqproxy2
 170 Platform: timer mark    48.002    0.002    ESP. getdataseq
 171 Platform: timer mark    48.002    0.0    ESP. getxref
 172 Platform: timer mark    48.383    0.38    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493543?content-type=application/json&all_levels=1
 173 Platform: timer mark    48.39    0.007    ESP. seqprox done
 174 Platform: timer mark    50.109    1.719    ESP. getdataseq
 175 Platform: timer mark    50.11    0.001    ESP. getxref
 176 Platform: timer mark    50.324    0.213    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000496384?content-type=application/json&all_levels=1
 177 Platform: timer mark    50.326    0.002    ESP. seqprox done
 178 Adding protein product for ENST00000496384
 179 Platform: timer mark    50.328    0.002    EnsemblSeqProx.fetchSeq
 180 Platform: timer mark    50.328    0.0    ENS seqproxy
 181 Platform: timer mark    50.599    0.271    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000496384?type=protein&Accept=application/json&content-type=application/json
 182 Platform: timer mark    50.6    0.001    ENS seqproxy2
 183 Platform: timer mark    50.603    0.003    ESP. getdataseq
 184 Platform: timer mark    50.603    0.0    ESP. getxref
 185 Platform: timer mark    50.779    0.174    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000419060?content-type=application/json&all_levels=1
 186 Platform: timer mark    50.78    0.001    ESP. seqprox done
 187 Platform: timer mark    51.955    1.175    ESP. getdataseq
 188 Platform: timer mark    51.956    0.001    ESP. getxref
 189 Platform: timer mark    52.112    0.156    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000469930?content-type=application/json&all_levels=1
 190 Platform: timer mark    52.114    0.002    ESP. seqprox done
 191 Adding protein product for ENST00000469930
 192 Platform: timer mark    52.114    0.0    EnsemblSeqProx.fetchSeq
 193 Platform: timer mark    52.115    0.001    ENS seqproxy
 194 Platform: timer mark    52.286    0.17    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000469930?type=protein&Accept=application/json&content-type=application/json
 195 Platform: timer mark    52.287    0.001    ENS seqproxy2
 196 Platform: timer mark    52.288    0.001    ESP. getdataseq
 197 Platform: timer mark    52.29    0.002    ESP. getxref
 198 Platform: timer mark    52.443    0.153    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495858?content-type=application/json&all_levels=1
 199 Platform: timer mark    52.444    0.001    ESP. seqprox done
 200 Platform: timer mark    53.65    1.206    ESP. getdataseq
 201 Platform: timer mark    53.651    0.001    ESP. getxref
 202 Platform: timer mark    53.827    0.175    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000288602?content-type=application/json&all_levels=1
 203 Platform: timer mark    53.828    0.001    ESP. seqprox done
 204 Adding protein product for ENST00000288602
 205 Platform: timer mark    53.829    0.001    EnsemblSeqProx.fetchSeq
 206 Platform: timer mark    53.829    0.0    ENS seqproxy
 207 Platform: timer mark    54.0    0.17    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000288602?type=protein&Accept=application/json&content-type=application/json
 208 Platform: timer mark    54.001    0.001    ENS seqproxy2
 209 Platform: timer mark    54.003    0.002    ESP. getdataseq
 210 Platform: timer mark    54.003    0.0    ESP. getxref
 211 Platform: timer mark    54.163    0.159    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000288602?content-type=application/json&all_levels=1
 212 Platform: timer mark    54.165    0.002    ESP. seqprox done
 213 Platform: timer mark    55.476    1.311    ESP. getdataseq
 214 Platform: timer mark    55.476    0.0    ESP. getxref
 215 Platform: timer mark    55.624    0.146    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642272?content-type=application/json&all_levels=1
 216 Platform: timer mark    55.625    0.001    ESP. seqprox done
 217 Adding protein product for ENST00000642272
 218 Platform: timer mark    55.626    0.001    EnsemblSeqProx.fetchSeq
 219 Platform: timer mark    55.627    0.001    ENS seqproxy
 220 Response code 400
 221 Platform: timer mark    55.783    0.156    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642272?type=protein&Accept=application/json&content-type=application/json
 222 No protein product found for ENST00000642272
 223 Platform: timer mark    56.888    1.105    ESP. getdataseq
 224 Platform: timer mark    56.888    0.0    ESP. getxref
 225 Platform: timer mark    57.272    0.383    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643790?content-type=application/json&all_levels=1
 226 Platform: timer mark    57.273    0.001    ESP. seqprox done
 227 Adding protein product for ENST00000643790
 228 Platform: timer mark    57.274    0.001    EnsemblSeqProx.fetchSeq
 229 Platform: timer mark    57.275    0.001    ENS seqproxy
 230 Response code 400
 231 Platform: timer mark    57.492    0.217    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643790?type=protein&Accept=application/json&content-type=application/json
 232 No protein product found for ENST00000643790
 233 Platform: timer mark    58.611    1.119    ESP. getdataseq
 234 Platform: timer mark    58.611    0.0    ESP. getxref
 235 Platform: timer mark    59.016    0.404    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646427?content-type=application/json&all_levels=1
 236 Platform: timer mark    59.017    0.001    ESP. seqprox done
 237 Adding protein product for ENST00000646427
 238 Platform: timer mark    59.163    0.145    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 239 Platform: timer mark    59.164    0.001    EnsemblSeqProx.fetchSeq
 240 Platform: timer mark    59.164    0.0    ENS seqproxy
 241 Response code 400
 242 Platform: timer mark    59.313    0.149    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646427?type=protein&Accept=application/json&content-type=application/json
 243 No protein product found for ENST00000646427
 244 Platform: timer mark    60.364    1.051    ESP. getdataseq
 245 Platform: timer mark    60.364    0.0    ESP. getxref
 246 Platform: timer mark    60.773    0.408    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642808?content-type=application/json&all_levels=1
 247 Platform: timer mark    60.774    0.001    ESP. seqprox done
 248 Adding protein product for ENST00000642808
 249 Platform: timer mark    60.775    0.001    EnsemblSeqProx.fetchSeq
 250 Platform: timer mark    60.775    0.0    ENS seqproxy
 251 Response code 400
 252 Platform: timer mark    60.925    0.149    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642808?type=protein&Accept=application/json&content-type=application/json
 253 No protein product found for ENST00000642808
 254 Platform: timer mark    61.993    1.068    ESP. getdataseq
 255 Platform: timer mark    61.993    0.0    ESP. getxref
 256 Platform: timer mark    62.389    0.394    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643356?content-type=application/json&all_levels=1
 257 Platform: timer mark    62.39    0.001    ESP. seqprox done
 258 Adding protein product for ENST00000643356
 259 Platform: timer mark    62.392    0.002    EnsemblSeqProx.fetchSeq
 260 Platform: timer mark    62.392    0.0    ENS seqproxy
 261 Response code 400
 262 Platform: timer mark    62.569    0.176    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643356?type=protein&Accept=application/json&content-type=application/json
 263 No protein product found for ENST00000643356
 264 Platform: timer mark    63.782    1.213    ESP. getdataseq
 265 Platform: timer mark    63.782    0.0    ESP. getxref
 266 Platform: timer mark    64.172    0.389    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000497784?content-type=application/json&all_levels=1
 267 Platform: timer mark    64.173    0.001    ESP. seqprox done
 268 Adding protein product for ENST00000497784
 269 Platform: timer mark    64.175    0.002    EnsemblSeqProx.fetchSeq
 270 Platform: timer mark    64.176    0.001    ENS seqproxy
 271 Platform: timer mark    64.375    0.199    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000497784?type=protein&Accept=application/json&content-type=application/json
 272 Platform: timer mark    64.376    0.001    ENS seqproxy2
 273 Platform: timer mark    64.378    0.002    ESP. getdataseq
 274 Platform: timer mark    64.379    0.001    ESP. getxref
 275 Platform: timer mark    64.606    0.227    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000420119?content-type=application/json&all_levels=1
 276 Platform: timer mark    64.607    0.001    ESP. seqprox done
 277 Platform: timer mark    65.783    1.176    ESP. getdataseq
 278 Platform: timer mark    65.784    0.001    ESP. getxref
 279 Platform: timer mark    65.932    0.147    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646334?content-type=application/json&all_levels=1
 280 Platform: timer mark    65.933    0.001    ESP. seqprox done
 281 Adding protein product for ENST00000646334
 282 Platform: timer mark    65.934    0.001    EnsemblSeqProx.fetchSeq
 283 Platform: timer mark    65.935    0.001    ENS seqproxy
 284 Response code 400
 285 Platform: timer mark    66.087    0.152    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646334?type=protein&Accept=application/json&content-type=application/json
 286 No protein product found for ENST00000646334
 287 Platform: timer mark    67.322    1.235    ESP. getdataseq
 288 Platform: timer mark    67.323    0.001    ESP. getxref
 289 Platform: timer mark    67.738    0.415    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646730?content-type=application/json&all_levels=1
 290 Platform: timer mark    67.74    0.002    ESP. seqprox done
 291 Adding protein product for ENST00000646730
 292 Platform: timer mark    67.741    0.001    EnsemblSeqProx.fetchSeq
 293 Platform: timer mark    67.741    0.0    ENS seqproxy
 294 Platform: timer mark    67.915    0.173    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646730?type=protein&Accept=application/json&content-type=application/json
 295 Platform: timer mark    67.915    0.0    ENS seqproxy2
 296 Platform: timer mark    67.917    0.002    ESP. getdataseq
 297 Platform: timer mark    67.917    0.0    ESP. getxref
 298 Platform: timer mark    68.073    0.155    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000494784?content-type=application/json&all_levels=1
 299 Platform: timer mark    68.074    0.001    ESP. seqprox done
 300 Platform: timer mark    69.304    1.23    ESP. getdataseq
 301 Platform: timer mark    69.305    0.001    ESP. getxref
 302 Platform: timer mark    69.478    0.173    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644650?content-type=application/json&all_levels=1
 303 Platform: timer mark    69.479    0.001    ESP. seqprox done
 304 Adding protein product for ENST00000644650
 305 Platform: timer mark    69.628    0.148    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 306 Platform: timer mark    69.628    0.0    EnsemblSeqProx.fetchSeq
 307 Platform: timer mark    69.629    0.001    ENS seqproxy
 308 Platform: timer mark    69.825    0.196    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644650?type=protein&Accept=application/json&content-type=application/json
 309 Platform: timer mark    69.826    0.001    ENS seqproxy2
 310 Platform: timer mark    69.827    0.001    ESP. getdataseq
 311 Platform: timer mark    69.828    0.001    ESP. getxref
 312 Platform: timer mark    69.974    0.145    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493783?content-type=application/json&all_levels=1
 313 Platform: timer mark    69.976    0.002    ESP. seqprox done
 314 Error retrieving protein for ENST00000644650: Index: -1, Size: 1
 315 Platform: timer mark    71.231    1.255    ESP. getdataseq
 316 Platform: timer mark    71.233    0.002    ESP. getxref
 317 Platform: timer mark    71.398    0.165    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000647434?content-type=application/json&all_levels=1
 318 Platform: timer mark    71.4    0.002    ESP. seqprox done
 319 Adding protein product for ENST00000647434
 320 Platform: timer mark    71.4    0.0    EnsemblSeqProx.fetchSeq
 321 Platform: timer mark    71.402    0.002    ENS seqproxy
 322 Platform: timer mark    71.581    0.179    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000647434?type=protein&Accept=application/json&content-type=application/json
 323 Platform: timer mark    71.582    0.001    ENS seqproxy2
 324 Platform: timer mark    71.584    0.002    ESP. getdataseq
 325 Platform: timer mark    71.585    0.001    ESP. getxref
 326 Platform: timer mark    71.745    0.159    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495132?content-type=application/json&all_levels=1
 327 Platform: timer mark    71.747    0.002    ESP. seqprox done
 328 Platform: timer mark    73.744    1.997    ESP. getdataseq
 329 Platform: timer mark    73.744    0.0    ESP. getxref
 330 Platform: timer mark    73.91    0.164    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000479537?content-type=application/json&all_levels=1
 331 Platform: timer mark    73.911    0.001    ESP. seqprox done
 332 Adding protein product for ENST00000479537
 333 Platform: timer mark    73.912    0.001    EnsemblSeqProx.fetchSeq
 334 Platform: timer mark    73.912    0.0    ENS seqproxy
 335 Platform: timer mark    74.088    0.175    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000479537?type=protein&Accept=application/json&content-type=application/json
 336 Platform: timer mark    74.09    0.002    ENS seqproxy2
 337 Platform: timer mark    74.091    0.001    ESP. getdataseq
 338 Platform: timer mark    74.092    0.001    ESP. getxref
 339 Platform: timer mark    74.24    0.148    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000418033?content-type=application/json&all_levels=1
 340 Platform: timer mark    74.241    0.001    ESP. seqprox done
 341 Error retrieving protein for ENST00000479537: Index: -1, Size: 1
 342 Platform: timer mark    75.433    1.192    ESP. getdataseq
 343 Platform: timer mark    75.433    0.0    ESP. getxref
 344 Platform: timer mark    75.603    0.169    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000645443?content-type=application/json&all_levels=1
 345 Platform: timer mark    75.604    0.001    ESP. seqprox done
 346 Adding protein product for ENST00000645443
 347 Platform: timer mark    75.606    0.002    EnsemblSeqProx.fetchSeq
 348 Platform: timer mark    75.606    0.0    ENS seqproxy
 349 Response code 400
 350 Platform: timer mark    75.753    0.147    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000645443?type=protein&Accept=application/json&content-type=application/json
 351 No protein product found for ENST00000645443
 352 Platform: timer mark    77.126    1.373    ESP. getdataseq
 353 Platform: timer mark    77.126    0.0    ESP. getxref
 354 Platform: timer mark    77.538    0.412    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644905?content-type=application/json&all_levels=1
 355 Platform: timer mark    77.54    0.002    ESP. seqprox done
 356 Adding protein product for ENST00000644905
 357 Platform: timer mark    77.54    0.0    EnsemblSeqProx.fetchSeq
 358 Platform: timer mark    77.541    0.001    ENS seqproxy
 359 Response code 400
 360 Platform: timer mark    77.708    0.166    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644905?type=protein&Accept=application/json&content-type=application/json
 361 No protein product found for ENST00000644905
 362 Platform: timer mark    78.958    1.25    ESP. getdataseq
 363 Platform: timer mark    78.958    0.0    ESP. getxref
 364 Platform: timer mark    79.409    0.45    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642228?content-type=application/json&all_levels=1
 365 Platform: timer mark    79.411    0.002    ESP. seqprox done
 366 Adding protein product for ENST00000642228
 367 Platform: timer mark    79.412    0.001    EnsemblSeqProx.fetchSeq
 368 Platform: timer mark    79.412    0.0    ENS seqproxy
 369 Platform: timer mark    79.571    0.159    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642228?type=protein&Accept=application/json&content-type=application/json
 370 Platform: timer mark    79.573    0.002    ENS seqproxy2
 371 Platform: timer mark    79.574    0.001    ESP. getdataseq
 372 Platform: timer mark    79.574    0.0    ESP. getxref
 373 Platform: timer mark    79.736    0.161    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493678?content-type=application/json&all_levels=1
 374 Platform: timer mark    79.737    0.001    ESP. seqprox done
 375 Platform: timer mark    81.189    1.452    ESP. getdataseq
 376 Platform: timer mark    81.19    0.001    ESP. getxref
 377 Platform: timer mark    81.389    0.198    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644969?content-type=application/json&all_levels=1
 378 Platform: timer mark    81.391    0.002    ESP. seqprox done
 379 Adding protein product for ENST00000644969
 380 Platform: timer mark    81.563    0.171    EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
 381 Platform: timer mark    81.564    0.001    EnsemblSeqProx.fetchSeq
 382 Platform: timer mark    81.565    0.001    ENS seqproxy
 383 Platform: timer mark    81.739    0.174    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644969?type=protein&Accept=application/json&content-type=application/json
 384 Platform: timer mark    81.739    0.0    ENS seqproxy2
 385 Platform: timer mark    81.741    0.002    ESP. getdataseq
 386 Platform: timer mark    81.741    0.0    ESP. getxref
 387 Platform: timer mark    81.905    0.162    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000496776?content-type=application/json&all_levels=1
 388 Platform: timer mark    81.907    0.002    ESP. seqprox done
 389 Platform: timer mark    83.297    1.39    ESP. getdataseq
 390 Platform: timer mark    83.297    0.0    ESP. getxref
 391 Platform: timer mark    83.441    0.143    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644120?content-type=application/json&all_levels=1
 392 Platform: timer mark    83.442    0.001    ESP. seqprox done
 393 Adding protein product for ENST00000644120
 394 Platform: timer mark    83.444    0.002    EnsemblSeqProx.fetchSeq
 395 Platform: timer mark    83.444    0.0    ENS seqproxy
 396 Response code 400
 397 Platform: timer mark    83.601    0.156    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644120?type=protein&Accept=application/json&content-type=application/json
 398 No protein product found for ENST00000644120
 399 Platform: timer mark    84.848    1.247    ESP. getdataseq
 400 Platform: timer mark    84.849    0.001    ESP. getxref
 401 Platform: timer mark    85.248    0.398    EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642875?content-type=application/json&all_levels=1
 402 Platform: timer mark    85.249    0.001    ESP. seqprox done
 403 Adding protein product for ENST00000642875
 404 Platform: timer mark    85.25    0.001    EnsemblSeqProx.fetchSeq
 405 Platform: timer mark    85.25    0.0    ENS seqproxy
 406 Response code 400
 407 Platform: timer mark    85.401    0.15    EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642875?type=protein&Accept=application/json&content-type=application/json
 408 No protein product found for ENST00000642875
 409 Platform: timer mark    86.467    1.066    Desktop Finished querying
 410 Platform: timer mark    86.479    0.012    Desktop Parsing results.
 411 JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
 412 JSWIndowUI ????
 413 Platform: timer mark    100.466    13.987    Desktop null
 414 JSFrameViewer creating new canvas testApplet_canvas4: 700 465
 415 JSWindowUI windowOpened true
 416 swingjs.api.Interface creating instance of java.awt.datatransfer.Clipboard
 417 This is System.out. clear it
 418 Add ?j2snocore to URL to see full class list; ?j2sdebug to use uncompressed j2s/core files
 419 get _j2sClassList.txt
 420 Jalview Test
 421 X
 422 Retrieved from ENSEMBL
 423 X
 424 Copied 22 sequences to clipboard.
 425 File
 426 Edit
 427 Select
 428 View
 429 Annotations
 430 Format
 431 Colour
 432 Calculate
 433 New Sequence Fetcher
 434 X
 435 ENSG00000157764
 436 Example query: ENSG00000157764
 437 Enter one or more accession IDs separated by a semi-colon ";"
 438 Replace commas with semi-colons
 439 File
 440 Tools
 441 Help
 442 Window