JAL-1976 Added progress indicators for HTML_SVG and BioJS export operations
[jalview.git] / resources / lang / Messages.properties
1 action.refresh_services = Refresh Services
2 action.reset_services = Reset Services
3 action.merge_results = Merge Results
4 action.load_scheme = Load scheme
5 action.save_scheme = Save scheme
6 action.save_image = Save Image
7 action.paste = Paste
8 action.show_html_source = Show HTML Source
9 action.print = Print...
10 action.web_service = Web Service
11 action.cancel_job = Cancel Job
12 action.start_job = Start Job
13 action.revert = Revert
14 action.move_down = Move Down
15 action.move_up = Move Up
16 action.remove_return_datatype = Remove return datatype
17 action.add_return_datatype = Add return datatype
18 action.remove_input_parameter = Remove selected input parameter
19 action.add_input_parameter = Add input parameter
20 action.edit = Edit
21 action.new = New
22 action.open_file = Open file
23 action.show_unconserved = Show Unconserved
24 action.open_new_alignment = Open new alignment
25 action.raise_associated_windows = Raise Associated Windows
26 action.minimize_associated_windows = Minimize Associated Windows
27 action.close_all = Close all
28 action.load_project = Load Project
29 action.save_project = Save Project
30 action.quit = Quit
31 action.expand_views = Expand Views
32 action.gather_views = Gather Views
33 action.page_setup = Page Setup...
34 action.reload = Reload
35 action.load = Load
36 action.open = Open
37 action.cancel = Cancel
38 action.create = Create
39 action.update = Update
40 action.delete = Delete
41 action.snapshot = Snapshot
42 action.clear = Clear
43 action.accept = Accept
44 action.select_ddbb = --- Select Database ---
45 action.undo = Undo
46 action.redo = Redo
47 action.reset = Reset
48 action.remove_left = Remove left
49 action.remove_right = Remove right
50 action.remove_empty_columns = Remove Empty Columns
51 action.remove_all_gaps = Remove All Gaps
52 action.left_justify_alignment = Left Justify Alignment
53 action.right_justify_alignment = Right Justify Alignment
54 action.boxes = Boxes
55 action.text = Text
56 action.by_pairwise_id = By Pairwise Identity
57 action.by_id = By Id
58 action.by_length = By Length
59 action.by_group = By Group
60 action.unmark_as_reference = Unmark as Reference 
61 action.set_as_reference = Set as Reference 
62 action.remove = Remove
63 action.remove_redundancy = Remove Redundancy...
64 action.pairwise_alignment = Pairwise Alignment
65 action.by_rna_helixes = By RNA Helices
66 action.user_defined = User Defined...
67 action.by_conservation = By Conservation
68 action.wrap = Wrap
69 action.show_gaps = Show Gaps
70 action.show_hidden_markers = Show Hidden Markers
71 action.find = Find
72 action.undefine_groups = Undefine Groups
73 action.create_groups = Create Groups
74 action.make_groups_selection = Make Groups For Selection
75 action.copy = Copy
76 action.cut = Cut
77 action.font = Font...
78 action.scale_above = Scale Above
79 action.scale_left = Scale Left
80 action.scale_right = Scale Right
81 action.by_tree_order = By Tree Order
82 action.sort = Sort
83 action.calculate_tree = Calculate Tree
84 action.help = Help
85 action.by_annotation = By Annotation...
86 action.invert_sequence_selection = Invert Sequence Selection
87 action.invert_column_selection = Invert Column Selection
88 action.show = Show
89 action.hide = Hide
90 action.ok = OK
91 action.set_defaults = Defaults
92 action.create_group = Create Group
93 action.remove_group = Remove Group
94 action.edit_group = Edit Group
95 action.border_colour = Border colour
96 action.edit_new_group = Edit New Group
97 action.hide_sequences = Hide Sequences
98 action.sequences = Sequences
99 action.ids = IDS
100 action.ids_sequences = IDS and sequences
101 action.reveal_all = Reveal All
102 action.reveal_sequences = Reveal Sequences
103 action.find_all = Find all
104 action.find_next = Find next
105 action.file = File
106 action.view = View
107 action.annotations = Annotations
108 action.change_params = Change Parameters
109 action.apply = Apply
110 action.apply_threshold_all_groups = Apply threshold to all groups
111 action.apply_all_groups = Apply to all Groups
112 action.by_chain = By Chain
113 action.by_sequence = By Sequence
114 action.paste_annotations = Paste Annotations
115 action.format = Format
116 action.select = Select
117 action.new_view = New View
118 action.close = Close
119 action.add = Add
120 action.save_as_default = Save as default
121 action.save_as = Save as...
122 action.save = Save
123 action.cancel_fetch = Cancel Fetch
124 action.save_omit_hidden_columns = Save / Omit Hidden Regions
125 action.change_font = Change Font
126 action.change_font_tree_panel = Change Font (Tree Panel)
127 action.colour = Colour
128 action.calculate = Calculate
129 action.select_all = Select all
130 action.deselect_all = Deselect all
131 action.invert_selection = Invert selection
132 action.using_jmol = Using Jmol
133 action.link = Link
134 action.group_link = Group Link
135 action.show_chain = Show Chain
136 action.show_group = Show Group
137 action.fetch_db_references = Fetch DB References
138 action.view_flanking_regions = Show flanking regions
139 label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment
140 label.str = Str:
141 label.seq = Seq:
142 label.structures_manager = Structures Manager
143 label.nickname = Nickname:
144 label.url = URL:
145 label.input_file_url = Enter URL or Input File
146 label.select_feature = Select feature:
147 label.name = Name
148 label.name_param = Name: {0}
149 label.group = Group
150 label.group_name = Group Name
151 label.group_description = Group Description
152 label.edit_group_name_description = Edit Group Name/Description
153 label.colour = Colour:
154 label.description = Description:
155 label.start = Start:
156 label.end = End:
157 label.current_parameter_set_name = Current parameter set name:
158 label.service_action = Service Action:
159 label.post_url = POST URL:
160 label.url_suffix = URL Suffix
161 label.sequence_source = Sequence Source
162 label.per_seq = per Sequence
163 label.result_vertically_separable = Results are vertically separable
164 label.amend = Amend
165 label.undo_command = Undo {0}
166 label.redo_command = Redo {0}
167 label.principal_component_analysis = Principal Component Analysis
168 label.average_distance_identity = Average Distance Using % Identity
169 label.neighbour_joining_identity = Neighbour Joining Using % Identity
170 label.treecalc_title = {0} Using {1}
171 label.tree_calc_av = Average Distance
172 label.tree_calc_nj = Neighbour Joining
173 label.select_score_model = Select score model
174 label.score_model_pid = % Identity
175 label.score_model_blosum62 = BLOSUM62
176 label.score_model_pam250 = PAM 250
177 label.score_model_conservation = Physicochemical property conservation
178 label.score_model_enhconservation = Physicochemical property conservation
179 label.status_bar = Status bar
180 label.out_to_textbox = Output to Textbox
181 label.clustalx = Clustalx
182 label.clustal = Clustal
183 label.zappo = Zappo
184 label.taylor = Taylor
185 label.blc = BLC
186 label.fasta = Fasta
187 label.msf = MSF
188 label.pfam = PFAM
189 label.pileup = Pileup
190 label.pir = PIR
191 label.hydrophobicity = Hydrophobicity
192 label.helix_propensity = Helix Propensity
193 label.strand_propensity = Strand Propensity
194 label.turn_propensity = Turn Propensity
195 label.buried_index = Buried Index
196 label.purine_pyrimidine = Purine/Pyrimidine
197 label.percentage_identity = Percentage Identity
198 label.blosum62 = BLOSUM62
199 label.blosum62_score = BLOSUM62 Score
200 label.tcoffee_scores = T-Coffee Scores
201 label.average_distance_bloslum62 = Average Distance Using BLOSUM62
202 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62
203 label.show_annotations = Show annotations
204 label.hide_annotations = Hide annotations
205 label.show_all_seq_annotations = Show sequence related
206 label.hide_all_seq_annotations = Hide sequence related
207 label.show_all_al_annotations = Show alignment related
208 label.hide_all_al_annotations = Hide alignment related
209 label.hide_all = Hide all
210 label.add_reference_annotations = Add reference annotations
211 label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).<br>Accepts regular expressions - search Help for 'regex' for details.
212 label.colour_text = Colour Text
213 label.show_non_conversed = Show nonconserved
214 label.overview_window = Overview Window
215 label.none = None
216 label.above_identity_threshold = Above Identity Threshold
217 label.show_sequence_features = Show Sequence Features
218 label.nucleotide = Nucleotide
219 label.protein = Protein
220 label.to_new_alignment = To New Alignment
221 label.to_this_alignment = Add To This Alignment
222 label.apply_colour_to_all_groups = Apply Colour To All Groups
223 label.modify_identity_thereshold = Modify Identity Threshold...
224 label.modify_conservation_thereshold = Modify Conservation Threshold...
225 label.input_from_textbox = Input from textbox
226 label.centre_column_labels = Centre column labels
227 label.automatic_scrolling = Automatic Scrolling
228 label.documentation = Documentation
229 label.about = About...
230 label.show_sequence_limits = Show Sequence Limits
231 action.feature_settings = Feature Settings...
232 label.feature_settings = Feature Settings
233 label.all_columns = All Columns
234 label.all_sequences = All Sequences
235 label.selected_columns = Selected Columns 
236 label.selected_sequences = Selected Sequences
237 label.except_selected_sequences = All except selected sequences
238 label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)
239 label.selected_region = Selected Region
240 label.all_sequences_columns = All Sequences and Columns
241 label.hide_insertions = Hide columns gapped for selection
242 label.hide_selected_annotations = Hide selected annotations
243 label.show_selected_annotations = Show selected annotations
244 label.group_consensus = Group Consensus
245 label.group_conservation = Group Conservation
246 label.show_consensus_histogram = Show Consensus Histogram
247 label.show_consensus_logo = Show Consensus Logo
248 label.norm_consensus_logo = Normalise Consensus Logo
249 label.apply_all_groups = Apply to all groups
250 label.autocalculated_annotation = Autocalculated Annotation
251 label.show_first = Show first
252 label.show_last = Show last
253 label.struct_from_pdb = Process secondary structure from PDB
254 label.use_rnaview = Use RNAView for secondary structure
255 label.autoadd_secstr = Add secondary structure annotation to alignment
256 label.autoadd_temp = Add Temperature Factor annotation to alignment
257 label.structure_viewer = Default structure viewer
258 label.chimera_path = Path to Chimera program
259 label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
260 label.invalid_chimera_path = Chimera path not found or not executable
261 label.chimera_missing = Chimera structure viewer not found.<br/>Please enter the path to Chimera (if installed),<br/>or download and install UCSF Chimera.
262 label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure
263 label.min_colour = Minimum Colour
264 label.max_colour = Maximum Colour
265 label.use_original_colours = Use Original Colours
266 label.threshold_minmax = Threshold is min/max
267 label.represent_group_with = Represent Group with {0}
268 label.selection = Selection
269 label.group_colour = Group Colour
270 label.sequence = Sequence
271 label.view_pdb_structure = View PDB Structure
272 label.min = Min:
273 label.max = Max:
274 label.colour_by_label = Colour by label
275 label.new_feature = New Feature
276 label.match_case = Match Case
277 label.view_alignment_editor = View in alignment editor
278 label.labels = Labels
279 label.output_values = Output Values...
280 label.output_points = Output points...
281 label.output_transformed_points = Output transformed points
282 label.input_data = Input Data...
283 label.nucleotide_matrix = Nucleotide matrix
284 label.protein_matrix = Protein matrix
285 label.show_bootstrap_values = Show Bootstrap Values
286 label.show_distances = Show distances
287 label.mark_unassociated_leaves = Mark Unassociated Leaves
288 label.fit_to_window = Fit To Window
289 label.newick_format = Newick Format
290 label.select_newick_like_tree_file = Select a newick-like tree file
291 label.colours = Colours
292 label.view_mapping = View Mapping
293 label.wireframe = Wireframe
294 label.depthcue = Depthcue
295 label.z_buffering = Z Buffering
296 label.charge_cysteine = Charge & Cysteine
297 label.all_chains_visible = All Chains Visible
298 label.successfully_added_features_alignment = Successfully added features to alignment
299 label.keyboard_editing_mode = Keyboard editing mode is {0}
300 label.paste_features_annotations_Tcoffee_here = Paste your features / annotations / T-coffee score file here.
301 label.removed_columns = Removed {0} columns.
302 label.removed_empty_columns = Removed {0} empty columns.
303 label.paste_newick_tree_file = Paste your Newick tree file here.
304 label.order_by_params = Order by {0}
305 label.html_content = <html>{0}</html>
306 label.paste_pdb_file= Paste your PDB file here.
307 label.paste_pdb_file_for_sequence = Paste PDB file for sequence {0}
308 label.could_not_parse_newick_file  = Could not parse Newick file\!\n {0}
309 label.successfully_pasted_tcoffee_scores_to_alignment= Successfully pasted T-Coffee scores to alignment.
310 label.failed_add_tcoffee_scores = Failed to add T-Coffee scores: 
311 label.successfully_pasted_annotation_to_alignment= Successfully pasted annotation to alignment.
312 label.couldnt_parse_pasted_text_as_valid_annotation_feature_GFF_tcoffee_file = Couldn't parse pasted text as a valid annotation, feature, GFF, or T-Coffee score file
313 label.successfully_pasted_alignment_file = Successfully pasted alignment file
314 label.paste_your_alignment_file = Paste your alignment file here
315 label.paste_your = Paste your
316 label.finished_searching = Finished searching
317 label.search_results= Search results {0} : {1}
318 label.found_match_for = Found match for {0}
319 label.font = Font:
320 label.size = Size:
321 label.style = Style:
322 label.enter_redundancy_threshold = Enter the redundancy threshold
323 label.calculating = Calculating....
324 label.modify_conservation_visibility = Modify conservation visibility
325 label.colour_residues_above_occurence = Colour residues above % occurence
326 label.set_this_label_text = set this label text
327 label.sequences_from = Sequences from {0}
328 label.successfully_loaded_file  = Successfully loaded file {0}
329 label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.
330 label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.
331 label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.
332 label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file
333 label.source_to_target = {0} ... {1}
334 label.per_sequence_only= Per-sequence only
335 label.to_file = to File
336 label.to_textbox = to Textbox
337 label.jalview = Jalview
338 label.csv_spreadsheet = CSV (Spreadsheet)
339 label.status = Status
340 label.channels = Channels
341 label.channel_title_item_count = {0} ({1})
342 label.blog_item_published_on_date = {0} {1} 
343 label.select_das_service_from_table = Select a DAS service from the table to read a full description here.</font></html>
344 label.session_update = Session Update
345 label.new_vamsas_session = New Vamsas Session
346 action.load_vamsas_session = Load Vamsas Session...
347 action.save_vamsas_session = Save Vamsas Session
348 label.select_vamsas_session_opened_as_new_vamsas_session= Select a vamsas session to be opened as a new vamsas session.
349 label.open_saved_vamsas_session = Open a saved VAMSAS session
350 label.groovy_console = Groovy Console...
351 label.lineart = Lineart
352 label.dont_ask_me_again = Don't ask me again
353 label.select_eps_character_rendering_style = Select EPS character rendering style
354 label.invert_selection = Invert Selection
355 label.optimise_order = Optimise Order
356 label.seq_sort_by_score = Sequence sort by Score
357 label.load_colours = Load Colours
358 label.save_colours = Save Colours
359 label.fetch_das_features = Fetch DAS Features
360 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} 
361 label.database_param = Database: {0}
362 label.example = Example
363 label.example_param = Example: {0}
364 label.select_file_format_before_saving = You must select a file format before saving!
365 label.file_format_not_specified = File format not specified
366 label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment?
367 label.couldnt_save_file = Couldn't save file: {0}
368 label.error_saving_file = Error Saving File
369 label.remove_from_default_list = Remove from default list?
370 label.remove_user_defined_colour = Remove user defined colour
371 label.you_must_select_least_two_sequences = You must select at least 2 sequences.
372 label.invalid_selection = Invalid Selection
373 label.principal_component_analysis_must_take_least_four_input_sequences = Principal component analysis must take\nat least 4 input sequences.
374 label.sequence_selection_insufficient = Sequence selection insufficient
375 label.you_need_more_two_sequences_selected_build_tree = You need to have more than two sequences selected to build a tree!
376 label.not_enough_sequences = Not enough sequences
377 label.selected_region_to_tree_may_only_contain_residues_or_gaps =  The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.
378 label.sequences_selection_not_aligned = Sequences in selection are not aligned
379 label.sequences_must_be_aligned_before_creating_tree = The sequences must be aligned before creating a tree.\nTry using the Pad function in the edit menu,\n or one of the multiple sequence alignment web services.
380 label.sequences_not_aligned = Sequences not aligned
381 label.problem_reading_tree_file =  Problem reading tree file
382 label.possible_problem_with_tree_file = Possible problem with tree file
383 label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = Please select at least three bases in at least one sequence in order to perform a cDNA translation.
384 label.translation_failed = Translation Failed
385 label.error_when_translating_sequences_submit_bug_report = Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace.
386 label.implementation_error  = Implementation error:
387 label.automatically_associate_pdb_files_with_sequences_same_name = Do you want to automatically associate the {0} PDB files with sequences in the alignment that have the same name?
388 label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name
389 label.ignore_unmatched_dropped_files_info = <html>Do you want to <em>ignore</em> the {0} files whose names did not match any sequence IDs ?</html>
390 label.ignore_unmatched_dropped_files = Ignore unmatched dropped files?
391 label.view_name_original = Original
392 label.enter_view_name = Enter View Name
393 label.enter_label = Enter label
394 label.enter_label_for_the_structure = Enter a label for the structure?
395 label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to re-use this viewer ?
396 label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0}
397 label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n
398 label.align_to_existing_structure_view = Align to existing structure view
399 label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually.
400 label.couldnt_load_file = Couldn't load file
401 label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.
402 label.no_pdb_id_in_file = No PDB Id in File
403 label.couldnt_read_pasted_text = Couldn't read the pasted text {0}
404 label.error_parsing_text = Error parsing text
405 label.enter_local_das_source = Enter Nickname & URL of Local DAS Source
406 label.you_can_only_edit_or_remove_local_das_sources = You can only edit or remove local DAS Sources!
407 label.public_das_source = Public DAS source - not editable
408 label.input_alignment_from_url = Input Alignment From URL
409 label.input_alignment = Input Alignment
410 label.couldnt_import_as_vamsas_session = Couldn't import {0} as a new vamsas session.
411 label.vamsas_document_import_failed = Vamsas Document Import Failed
412 label.couldnt_locate = Couldn't locate {0}
413 label.url_not_found = URL not found
414 label.no_link_selected = No link selected
415 label.new_sequence_url_link = New sequence URL link
416 label.cannot_edit_annotations_in_wrapped_view = Cannot edit annotations in wrapped view
417 label.wrapped_view_no_edit = Wrapped view - no edit
418 label.error_retrieving_data = Error Retrieving Data
419 label.user_colour_scheme_must_have_name = User colour scheme must have a name
420 label.no_name_colour_scheme = No name for colour scheme
421 label.invalid_url = Invalid URL !
422 label.error_loading_file = Error loading file
423 label.problems_opening_file = Encountered problems opening {0}!!
424 label.file_open_error = File open error
425 label.no_das_sources_selected_warn = No das sources were selected.\nPlease select some sources and\ntry again.
426 label.no_das_sources_selected_title = No DAS Sources Selected
427 label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?"
428 label.duplicate_scheme_name = Duplicate scheme name
429 label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n
430 label.jalview_user_survey = Jalview User Survey
431 label.alignment_properties = Alignment Properties: {0}
432 label.alignment_props = Alignment Properties
433 label.input_cut_paste = Cut & Paste Input
434 label.input_cut_paste_params = Cut & Paste Input - {0}
435 label.alignment_output_command = Alignment output - {0}
436 label.annotations = Annotations
437 label.structure_options = Structure Options
438 label.features = Features
439 label.overview_params = Overview {0}
440 label.paste_newick_file = Paste Newick file
441 label.load_tree_from_file = From File - 
442 label.colour_by_annotation = Colour by Annotation
443 label.selection_output_command = Selection output - {0}
444 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
445 label.pdb_sequence_mapping = PDB - Sequence Mapping
446 label.pca_details = PCA details
447 label.redundancy_threshold_selection = Redundancy threshold selection
448 label.user_defined_colours = User defined colours
449 label.jalviewLite_release = JalviewLite - Release {0}
450 label.jaview_build_date = Build date: {0}
451 label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Mungo Carstairs, Tochukwu Ofoegbu, Lauren Lui, Jan Engelhardt,
452 label.jalview_authors_2 = Natasha Sherstnev, Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton.
453 label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK.
454 label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list
455 label.jalview_please_cite = If  you use Jalview, please cite:
456 label.jalview_cite_1_authors = Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
457 label.jalview_cite_1_title = Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
458 label.jalview_cite_1_ref = Bioinformatics doi: 10.1093/bioinformatics/btp033
459 label.right_click = Right click
460 label.to_add_annotation = to add annotation
461 label.alignment_has_no_annotations = Alignment has no annotations
462 label.retrieving_pdb_data = Retrieving PDB data...
463 label.label = Label
464 label.no_features_added_to_this_alignment = No Features added to this alignment!!
465 label.features_can_be_added_from_searches_1 = (Features can be added from searches or
466 label.features_can_be_added_from_searches_2 = from Jalview / GFF features files)
467 label.calculating_pca= Calculating PCA
468 label.reveal_columns = Reveal Columns
469 label.jalview_cannot_open_file = Jalview can't open file
470 label.jalview_applet = Jalview applet
471 label.loading_data = Loading data
472 label.memory_stats = Total Free Memory: {0} MB; Max Memory: {1} MB; {2} %
473 label.calculating_tree = Calculating tree
474 label.state_queueing = queuing
475 label.state_running = running
476 label.state_complete = complete
477 label.state_completed = finished
478 label.state_job_cancelled = job cancelled!!
479 label.state_job_error = job error!
480 label.server_error_try_later = Server Error! (try later)
481 label.error_loading_pdb_data = Error loading PDB data!!
482 label.fetching_pdb_data = Fetching PDB data...
483 label.structure_type = Structure type
484 label.settings_for_type = Settings for {0}
485 label.view_full_application = View in Full Application
486 label.load_associated_tree = Load Associated Tree...
487 label.load_features_annotations = Load Features/Annotations...
488 label.export_features = Export Features...
489 label.export_annotations = Export Annotations...
490 label.to_upper_case = To Upper Case
491 label.to_lower_case = To Lower Case
492 label.toggle_case = Toggle Case
493 label.edit_name_description = Edit Name/Description...
494 label.create_sequence_feature = Create Sequence Feature...
495 label.edit_sequence = Edit Sequence
496 label.edit_sequences = Edit Sequences
497 label.sequence_details = Sequence Details
498 label.jmol_help = Jmol Help
499 label.chimera_help = Chimera Help
500 label.close_viewer = Close Viewer
501 label.confirm_close_chimera = This will close Jalview''s connection to {0}.<br>Do you want to close the Chimera window as well?
502 label.chimera_help = Chimera Help
503 label.all = All
504 label.sort_by = Sort alignment by
505 label.sort_by_score = Sort by Score
506 label.sort_by_density = Sort by Density
507 label.sequence_sort_by_density = Sequence sort by Density
508 label.sort_ann_by = Sort annotations by
509 label.sort_annotations_by_sequence = Sort by sequence
510 label.sort_annotations_by_label = Sort by label
511 label.reveal = Reveal
512 label.hide_columns = Hide Columns
513 label.load_jalview_annotations = Load Jalview Annotations or Features File
514 label.load_tree_file = Load a tree file
515 label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = Retrieve and parse sequence database records for the alignment or the currently selected sequences
516 label.standard_databases = Standard Databases
517 label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources
518 label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
519 label.align_structures_using_linked_alignment_views = Align structures using {0} linked alignment views
520 label.connect_to_session = Connect to session {0}
521 label.threshold_feature_display_by_score = Threshold the feature display by score.
522 label.threshold_feature_no_thereshold = No Threshold
523 label.threshold_feature_above_thereshold = Above Threshold
524 label.threshold_feature_below_thereshold = Below Threshold
525 label.adjust_thereshold = Adjust threshold
526 label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold.
527 label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features)
528 label.select_colour_minimum_value = Select Colour for Minimum Value
529 label.select_colour_maximum_value = Select Colour for Maximum Value
530 label.open_new_jmol_view_with_all_structures_associated_current_selection_superimpose_using_alignment = Open a new structure viewer with all structures associated with the current selection and superimpose them using the alignment.
531 label.open_url_param = Open URL {0}
532 label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
533 label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
534 label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
535 label.dark_colour = Dark Colour
536 label.light_colour = Light Colour
537 label.highlightnode = Left click to select leaves.<br>Double-click to invert leaves.<br>Right click to change colour.
538 label.load_colour_scheme = Load colour scheme
539 label.copy_format_from = Copy format from
540 label.toggle_enabled_views = When enabled, allows many views to be selected.
541 label.select_all_views = Select all views
542 label.select_many_views = Select many views
543 label.edit_notes_parameter_set = Click to edit the notes for this parameter set.
544 label.open_local_file = Open local file
545 label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort<br>the alignment when you open<br> a new tree.
546 label.listen_for_selections = Listen for selections
547 label.selections_mirror_selections_made_same_sequences_other_views = When selected, selections in this view will mirror<br>selections made on the same sequences in other views.
548 label.toggle_sequence_visibility = Shift+H toggles sequence visiblity
549 label.toggle_columns_visibility = Ctrl+H toggles column visiblity.
550 label.toggles_visibility_hidden_selected_regions = H toggles visibility of hidden or selected regions
551 label.rename_tab_eXpand_reGroup=  Right-click to rename tab <br> Press X to eXpand tabs, G to reGroup.
552 label.right_align_sequence_id = Right Align Sequence Id
553 label.sequence_id_tooltip = Sequence ID Tooltip
554 label.no_services = <No Services>
555 label.select_copy_raw_html = Select this if you want to copy raw html
556 label.share_data_vamsas_applications = Share data with other vamsas applications
557 label.connect_to = Connect to
558 label.join_existing_vamsas_session = Join an existing vamsas session
559 label.from_url = from URL
560 label.any_trees_calculated_or_loaded_alignment_automatically_sort = When selected, any trees calculated or loaded onto the alignment will automatically sort the alignment
561 label.sort_with_new_tree = Sort With New Tree
562 label.from_textbox = from Textbox
563 label.window = Window
564 label.preferences = Preferences
565 label.tools = Tools
566 label.fetch_sequences = Fetch Sequences
567 action.fetch_sequences = Fetch Sequences...
568 label.stop_vamsas_session = Stop Vamsas Session
569 label.collect_garbage = Collect Garbage
570 label.show_memory_usage = Show Memory Usage
571 label.show_java_console = Show Java Console
572 label.show_jalview_news = Show Jalview News
573 label.take_snapshot = Take snapshot
574 label.monospaced_fonts_faster_to_render = Monospaced fonts are faster to render
575 label.anti_alias_fonts = Anti-alias Fonts (Slower to render)
576 label.monospaced_font= Monospaced
577 label.quality = Quality
578 label.maximize_window = Maximize Window
579 label.conservation = Conservation
580 label.consensus = Consensus
581 label.histogram = Histogram
582 label.logo = Logo
583 label.non_positional_features = List Non-positional Features
584 label.database_references = List Database References
585 label.share_selection_across_views = Share selection across views
586 label.scroll_highlighted_regions = Scroll to highlighted regions
587 label.gap_symbol = Gap Symbol
588 label.prot_alignment_colour = Protein Alignment Colour
589 label.nuc_alignment_colour = Nucleotide Alignment Colour
590 label.address = Address
591 label.port = Port
592 label.default_browser_unix = Default Browser (Unix)
593 label.send_usage_statistics = Send usage statistics
594 label.check_for_questionnaires = Check for questionnaires
595 label.check_for_latest_version = Check for latest version
596 label.url_linkfrom_sequence_id = URL link from Sequence ID
597 label.use_proxy_server = Use a proxy server
598 label.eps_rendering_style = EPS rendering style
599 label.append_start_end = Append /start-end (/15-380)
600 label.full_sequence_id = Full Sequence Id
601 label.smooth_font = Smooth Font
602 label.autocalculate_consensus = AutoCalculate Consensus
603 label.pad_gaps = Pad Gaps
604 label.pad_gaps_when_editing = Pad Gaps When Editing
605 label.automatically_set_id_width = Automatically set ID width
606 label.figure_id_column_width = Figure ID column width
607 label.use_modeller_output = Use Modeller Output
608 label.wrap_alignment = Wrap Alignment
609 label.right_align_ids = Right Align Ids
610 label.sequence_name_italics = Italic Sequence Ids
611 label.open_overview = Open Overview
612 label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment
613 label.annotation_shading_default = Annotation Shading Default
614 label.default_minimum_colour_annotation_shading = Default Minimum Colour for annotation shading
615 label.default_maximum_colour_annotation_shading = Default Maximum Colour for annotation shading
616 label.visual = Visual
617 label.connections = Connections
618 label.output = Output
619 label.editing = Editing
620 label.das_settings = DAS Settings
621 label.web_services = Web Services
622 label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter.
623 label.let_jmol_manage_structure_colours = Let Jmol manage structure colours
624 label.let_chimera_manage_structure_colours = Let Chimera manage structure colours
625 label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence
626 label.index_web_services_menu_by_host_site = Index web services in menu by the host site
627 label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed<br>when a web service URL cannot be accessed by Jalview<br>when it starts up
628 label.new_service_url = New Service URL
629 label.edit_service_url = Edit Service URL
630 label.delete_service_url = Delete Service URL
631 label.details = Details
632 label.options = Options
633 label.parameters = Parameters
634 label.available_das_sources = Available DAS Sources
635 label.full_details = Full Details
636 label.authority = Authority
637 label.type = Type
638 label.proxy_server = Proxy Server
639 label.file_output = File Output
640 label.select_input_type = Select input type
641 label.set_options_for_type = Set options for type
642 label.data_input_parameters = Data input parameters
643 label.data_returned_by_service = Data returned by service
644 label.rsbs_encoded_service = RSBS Encoded Service
645 label.parsing_errors = Parsing errors
646 label.simple_bioinformatics_rest_services = Simple Bioinformatics Rest Services
647 label.web_service_discovery_urls = Web Service Discovery URLS
648 label.input_parameter_name = Input Parameter name
649 label.short_descriptive_name_for_service = Short descriptive name for service
650 label.function_service_performs = What kind of function the service performs (e.g. alignment, analysis, search, etc).
651 label.brief_description_service = Brief description of service
652 label.url_post_data_service = URL to post data to service. Include any special parameters needed here
653 label.optional_suffix = Optional suffix added to URL when retrieving results from service
654 label.preferred_gap_character = Which gap character does this service prefer?
655 label.gap_character = Gap character
656 label.move_return_type_up_order= Move return type up order
657 label.move_return_type_down_order= Move return type down order
658 label.update_user_parameter_set = Update this existing user parameter set
659 label.delete_user_parameter_set = Delete the currently selected user parameter set
660 label.create_user_parameter_set = Create a new parameter set with the current settings.
661 label.revert_changes_user_parameter_set = Undo all changes to the current parameter set
662 label.start_job_current_settings = Start Job with current settings
663 label.cancel_job_close_dialog = Close this dialog and cancel job
664 label.input_output = Input/Output
665 label.cut_paste = Cut'n'Paste
666 label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation
667 label.2d_rna_structure_line = 2D RNA {0} (alignment)
668 label.2d_rna_sequence_name = 2D RNA - {0}
669 label.edit_name_and_description_current_group = Edit name and description of current group.
670 label.view_structure_for = View structure for {0}
671 label.view_all_structures = View all {0} structures.
672 label.view_all_representative_structures = View all {0} representative structures.
673 label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new structure viewer with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment.
674 label.associate_structure_with_sequence = Associate Structure with Sequence
675 label.from_file = From File
676 label.enter_pdb_id = Enter PDB Id
677 label.discover_pdb_ids = Discover PDB IDs
678 label.text_colour = Text Colour
679 action.set_text_colour = Text Colour...
680 label.structure = Structure
681 label.view_structure = View Structure
682 label.view_protein_structure = View Protein Structure
683 label.show_pdbstruct_dialog = 3D Structure Data...
684 label.view_rna_structure = VARNA 2D Structure
685 label.clustalx_colours = Clustalx colours
686 label.above_identity_percentage = Above % Identity
687 label.create_sequence_details_report_annotation_for = Annotation for {0}
688 label.sequence_details_for = Sequence Details for {0}
689 label.sequence_name = Sequence Name
690 label.sequence_description = Sequence Description
691 label.edit_sequence_name_description = Edit Sequence Name/Description
692 label.spaces_converted_to_backslashes = Spaces have been converted to _
693 label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
694 label.select_outline_colour = Select Outline Colour
695 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
696 label.web_browser_not_found = Web browser not found
697 label.select_pdb_file_for = Select a PDB file for {0}
698 label.html = HTML
699 label.wrap = Wrap
700 label.show_database_refs = Show Database Refs
701 label.show_non_positional_features = Show Non-Positional Features
702 label.save_png_image = Save As PNG Image
703 label.load_tree_for_sequence_set = Load a tree for this sequence set
704 label.export_image = Export Image
705 label.vamsas_store = VAMSAS store
706 label.translate_cDNA = Translate as cDNA
707 label.linked_view_title = Linked cDNA and protein view
708 label.align = Align
709 label.extract_scores = Extract Scores
710 label.get_cross_refs = Get Cross-References
711 label.sort_alignment_new_tree = Sort Alignment With New Tree
712 label.add_sequences = Add Sequences
713 label.new_window = New Window
714 label.split_window = Split Window
715 label.refresh_available_sources = Refresh Available Sources
716 label.use_registry = Use Registry
717 label.add_local_source = Add Local Source
718 label.set_as_default = Set as Default
719 label.show_labels = Show labels
720 label.background_colour = Background Colour
721 action.background_colour = Background Colour...
722 label.associate_nodes_with = Associate Nodes With
723 label.jalview_pca_calculation = Jalview PCA Calculation
724 label.link_name = Link Name
725 label.pdb_file = PDB file
726 label.colour_with_jmol = Colour with Jmol
727 label.colour_with_chimera = Colour with Chimera
728 label.align_structures = Align Structures
729 label.jmol = Jmol
730 label.chimera = Chimera
731 label.sort_alignment_by_tree = Sort Alignment By Tree
732 label.mark_unlinked_leaves = Mark Unlinked Leaves
733 label.associate_leaves_with = Associate Leaves With
734 label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu
735 label.case_sensitive = Case Sensitive
736 label.lower_case_colour = Lower Case Colour
737 label.index_by_host = Index by Host
738 label.index_by_type = Index by Type
739 label.enable_jabaws_services = Enable JABAWS Services
740 label.display_warnings = Display Warnings
741 label.move_url_up = Move URL Up
742 label.move_url_down = Move URL Down
743 label.add_sbrs_definition = Add a SBRS Definition
744 label.edit_sbrs_definition = Edit SBRS Definition
745 label.delete_sbrs_definition = Delete SBRS Definition
746 label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases. Some of the ids have been\n altered, most likely the start/end residue will have been updated.\n Save your alignment to maintain the updated id.\n\n
747 label.sequence_names_updated = Sequence names updated
748 label.dbref_search_completed = DBRef search completed
749 label.show_all_chains = Show all chains
750 label.fetch_all_param = Fetch all {0}
751 label.paste_new_window = Paste To New Window
752 label.settings_for_param = Settings for {0}
753 label.view_params = View {0}
754 label.aacon_calculations = AACon Calculations
755 label.aacon_settings = Change AACon Settings...
756 tooltip.aacon_calculations = When checked, AACon calculations are updated automatically.
757 tooltip.aacon_settings = Modify settings for AACon calculations.
758 label.rnalifold_calculations = RNAAliFold Prediction
759 label.rnalifold_settings = Change RNAAliFold settings...
760 tooltip.rnalifold_calculations = When checked, RNA secondary structure predictions will be calculated for the alignment, and updated when edits are made.
761 tooltip.rnalifold_settings = Modify settings for the RNAAliFold prediction. Use this to hide or show different results of the RNA calculation, and change RNA folding parameters.
762 label.all_views = All Views
763 label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
764 label.realign_with_params = Realign with {0}
765 label.calcname_with_default_settings = {0} with Defaults
766 label.action_with_default_settings = {0} with default settings
767 label.edit_settings_and_run = Edit settings and run...
768 label.view_and_change_parameters_before_alignment = View and change the parameters before alignment
769 label.run_with_preset_params = Run {0} with preset
770 label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation
771 label.view_documentation = View documentation
772 label.select_return_type = Select return type
773 label.translation_of_params = Translation of {0}
774 label.features_for_params = Features for - {0}
775 label.annotations_for_params = Annotations for - {0}
776 label.generating_features_for_params = Generating features for - {0}
777 label.generating_annotations_for_params = Generating annotations for - {0}
778 label.varna_params = VARNA - {0}
779 label.sequence_feature_settings = Sequence Feature Settings
780 label.pairwise_aligned_sequences = Pairwise Aligned Sequences
781 label.original_data_for_params = Original Data for {0}
782 label.points_for_params = Points for {0}
783 label.transformed_points_for_params = Transformed points for {0}
784 label.graduated_color_for_params = Graduated Feature Colour for {0}
785 label.select_backgroud_colour = Select Background Colour
786 label.invalid_font = Invalid Font
787 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
788 label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
789 label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database)
790 label.replace_commas_semicolons = Replace commas with semi-colons
791 label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
792 label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
793 label.example_query_param = Example query: {0}
794 label.enter_value_increase_conservation_visibility = Enter value to increase conservation visibility
795 label.enter_percentage_identity_above_which_colour_residues = Enter % identity above which to colour residues
796 label.wswublast_client_credits = To display sequence features an exact Uniprot id with 100% sequence identity match must be entered.\nIn order to display these features, try changing the names of your sequences to the ids suggested below.\n\nRunning WSWUBlast at EBI.\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R.\nSOAP-based services provided by the European Bioinformatics Institute.\nNucleic Acids Res. 33(1)\:W25-W28 (2005));
797 label.blasting_for_unidentified_sequence = BLASTing for unidentified sequences
798 label.select_columns_containing = Select columns containing
799 label.select_columns_not_containing = Select columns that do not contain
800 option.trim_retrieved_seqs = Trim retrieved sequences
801 label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences.
802 label.use_sequence_id_1 = Use $SEQUENCE_ID$ or $SEQUENCE_ID=/<regex>/=$
803 label.use_sequence_id_2 = \nto embed sequence id in URL
804 label.ws_parameters_for = Parameters for {0}
805 label.switch_server = Switch server
806 label.choose_jabaws_server = Choose a server for running this service
807 label.services_at = Services at {0}
808 label.rest_client_submit = {0} using {1}
809 label.fetch_retrieve_from =Retrieve from {0}</html>
810 label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}<br>First is :{2}<html> 
811 #label.feature_settings_click_drag = <html>Click/drag feature types up or down to change render order.<br/>Double click to select columns containing feature in alignment/current selection<br/>Pressing Alt will select columns outside features rather than inside<br/>Pressing Shift to modify current selection (rather than clear current selection)<br/>Press CTRL or Command/Meta to toggle columns in/outside features<br/></html>
812 label.feature_settings_click_drag = Drag up or down to change render order.<br/>Double click to select columns containing feature.
813 label.transparency_tip = Adjust transparency to 'see through' feature colours.
814 label.opt_and_params_further_details = see further details by right-clicking
815 label.opt_and_params_show_brief_desc_image_link = <html>Click to show brief description<br><img src="{0}"/> Right click for further information.</html> 
816 label.opt_and_params_show_brief_desc = <html>Click to show brief description<br></html>
817 label.adjusts_width_generated_eps_png = <html>Adjusts the width of the generated EPS or PNG file to ensure even the longest sequence ID or annotation label is displayed</html>
818 label.manually_specify_width_left_column = <html>Manually specify the width of the left hand column where sequence IDs and annotation labels will be rendered in exported alignment figures. This setting will be ignored if 'Automatically set ID width' is set</html>
819 label.job_created_when_checked = <html>When checked, a job is created for every sequence in the current selection.</html>
820 label.when_checked_job_visible_region_and_results = <html>When checked, a single job is created for the visible region and results mapped back onto their location in the alignment. Otherwise, a job would be created for every contiguous region visible in the alignment or current selection (e.g. a multiple alignment).</html>
821 label.flat_file_representation = <html>Flat file representation of this rest service using the Really Simple Bioinformatics Service formalism</html>
822 label.result_of_parsing_rsbs = <html>Results of parsing the RSBS representation</html>
823 label.user_preset = User Preset
824 label.service_preset = Service Preset
825 label.run_with_preset = Run {0} with preset
826 label.view_service_doc_url = <html>View <a href="{0}">{1}</a></html>
827 label.submit_sequence = <html>Submit {0} {1} {2} {3} to<br/>{4}</html>
828 action.by_title_param = By {0}
829 label.alignment = Alignment
830 label.secondary_structure_prediction = Secondary Structure Prediction
831 label.sequence_database_search = Sequence Database Search
832 label.analysis = Analysis
833 label.protein_disorder = Protein Disorder 
834 label.source_from_db_source = Sources from {0}
835 label.from_msname = from {0}
836 label.superpose_with = Superpose with
837 action.do = Do
838 label.scale_label_to_column = Scale Label to Column
839 label.add_new_row = Add New Row
840 label.edit_label_description = Edit Label/Description
841 label.hide_row = Hide This Row
842 label.delete_row = Delete This Row
843 label.show_all_hidden_rows = Show All Hidden Rows
844 label.export_annotation = Export Annotation
845 label.copy_consensus_sequence = Copy Consensus Sequence
846 label.helix = Helix
847 label.sheet = Sheet
848 label.rna_helix = RNA Helix
849 label.remove_annotation = Remove Annotation
850 label.colour_by = Colour by...
851 label.muscle_multiple_protein_sequence_alignment = Muscle Multiple Protein Sequence Alignment
852 label.mafft_multiple_sequence_alignment = MAFFT Multiple Sequence Alignment
853 label.clustalw_multiple_sequence_alignment = ClustalW Multiple Sequence Alignment
854 label.jnet_secondary_structure_prediction = JNet Secondary Structure Prediction
855 label.multiharmony = Multi-Harmony
856 label.unable_start_web_service_analysis = Unable to start web service analysis
857 label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages.
858 label.prompt_each_time = Prompt each time
859 label.use_source = Use Source
860 label.couldnt_save_project = Couldn't save project
861 label.error_whilst_saving_current_state_to = Error whilst saving current state to {0}
862 label.error_whilst_loading_project_from = Error whilst loading project from {0}
863 label.couldnt_load_project = Couldn't load project
864 label.pca_sequences_not_aligned = The sequences must be aligned before calculating PCA.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.
865 label.invalid_name_preset_exists = Invalid name - preset already exists.
866 label.invalid_name = Invalid name
867 label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window
868 label.proxy_authorization_failed = Proxy Authorization Failed
869 label.internal_jalview_error = Internal Jalview Error
870 label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn't be located.
871 label.service_called_is_not_msa_service = The Service called \n{0}\nis not a \nMultiple Sequence Alignment Service\!
872 label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} is unknown
873 label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\!
874 label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown
875 label.feature_type = Feature Type
876 label.display = Display
877 label.service_url = Service URL
878 label.copied_sequences = Copied sequences
879 label.cut_sequences = Cut Sequences
880 label.conservation_colour_increment = Conservation Colour Increment ({0})
881 label.percentage_identity_thereshold = Percentage Identity Threshold ({0})
882 label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog
883 label.save_alignment_to_file = Save Alignment to file
884 label.save_features_to_file = Save Features to File
885 label.save_annotation_to_file = Save Annotation to File
886 label.no_features_on_alignment = No features found on alignment
887 label.save_pdb_file = Save PDB File
888 label.save_text_to_file = Save Text to File
889 label.save_state = Save State
890 label.restore_state = Restore State
891 label.saving_jalview_project = Saving jalview project {0}
892 label.loading_jalview_project = Loading jalview project {0}
893 label.save_vamsas_document_archive = Save Vamsas Document Archive
894 label.saving_vamsas_doc = Saving VAMSAS Document to {0}
895 label.load_feature_colours = Load Feature Colours
896 label.save_feature_colours = Save Feature Colour Scheme
897 label.dataset_for = {0} Dataset for {1}
898 label.select_startup_file = Select startup file
899 label.select_default_browser = Select default web browser
900 label.save_tree_as_newick = Save tree as newick file
901 label.create_eps_from_tree = Create EPS file from tree
902 label.create_png_from_tree = Create PNG image from tree
903 label.save_colour_scheme = Save colour scheme
904 label.edit_params_for = Edit parameters for {0}
905 label.choose_filename_for_param_file = Choose a filename for this parameter file
906 label.save_as_html = Save as HTML
907 label.recently_opened = Recently Opened
908 label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0}  jobs running.
909 label.tree_from = Tree from {0}
910 label.webservice_job_title = {0} using {1}
911 label.select_visible_region_of = selected {0} region of {1}
912 label.visible = Visible
913 label.select_unselect_visible_regions_from = select and unselected {0} regions from {1}
914 label.visible_region_of = visible region of
915 label.webservice_job_title_on = {0} using {1} on {2}
916 label.updating_vamsas_session = Updating vamsas session
917 label.loading_file = Loading File: {0}
918 label.edit_params = Edit {0}
919 error.not_implemented = Not implemented
920 error.no_such_method_as_clone1_for = No such method as clone1 for {0}
921 error.null_from_clone1 = Null from clone1!
922 error.implementation_error_sortbyfeature = Implementation Error - sortByFeature method must be one of FEATURE_SCORE, FEATURE_LABEL or FEATURE_DENSITY.
923 error.not_yet_implemented = Not yet implemented
924 error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values.
925 error.implementation_error_dont_know_thereshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
926 error.implementation_error_embeddedpopup_not_null = Implementation error - embeddedPopup must be non-null
927 error.invalid_colour_for_mycheckbox = Invalid color for MyCheckBox
928 error.implementation_error_unrecognised_render_object_for_features_type = Implementation Error: Unrecognised render object {0} for features of type {1}
929 error.implementation_error_unsupported_feature_colour_object = Implementation error: Unsupported feature colour object.
930 error.invalid_separator_parameter = Invalid separator parameter - must be non-zero length
931 error.alignment_cigararray_not_implemented = Alignment(CigarArray) not yet implemented
932 error.weak_sequencei_equivalence_not_yet_implemented = Weak sequenceI equivalence not yet implemented.
933 error.implementation_error_can_only_make_alignmnet_from_cigararray = Implementation Error - can only make an alignment view from a CigarArray of sequences.
934 error.empty_view_cannot_be_updated = empty view cannot be updated.
935 error.mismatch_between_number_of_sequences_in_block = Mismatch between number of sequences in block {0} ({1}) and the original view ({2})
936 error.padding_not_yet_implemented = Padding not yet implemented
937 error.mismatch_between_visible_blocks_to_update_and_number_of_contigs_in_view = Mismatch between visible blocks to update and number of contigs in view (contigs=0,blocks={0})
938 error.unknown_seq_cigar_operation = Unknown SeqCigar operation {0}
939 error.implementation_bug_parse_cigar_string = Implementation bug in parseCigarString
940 error.implementation_error_invalid_operation_string = Implementation error. Invalid operation string.
941 error.invalid_range_string = Invalid range string (must be zero or positive number)
942 error.implementation_error_delete_range_out_of_bounds = Implementation Error: deleteRange out of bounds: start must be non-negative and less than end.
943 error.implementation_error = Implementation error
944 error.implementation_error_unknown_operation = Implementation Error! Unknown operation {0}
945 error.implementation_error_unexpected_null_from_get_sequence_and_deletions = Implementation Error - unexpected null from getSequenceAndDeletions
946 error.implementation_error_set_seq_null = Implementation Error - _setSeq(null,...)
947 error.implementation_error_s = Implementation Error: _s= {0}
948 error.implementation_error_seqcigar_possible = SeqCigar: Possible implementation error: sequence is longer than dataset sequence
949 error.implmentation_bug_seq_null = Implementation Bug. Null seq
950 error.implementation_bug_cigar_operation_list_range_list = Implementation Bug. Cigar Operation list!= range list
951 error.not_yet_implemented_cigar_object_from_cigar_string = NOT YET Implemented: Constructing a Cigar object from a cigar string and a gapped sequence.
952 error.implementation_bug_cigar_operation = Implementation Bug. Cigar Operation {0} {1} not one of {2}, {3}, or {4}.
953 error.implementation_error_for_new_cigar = Implementation error for new Cigar(SequenceI)
954 error.implementation_error_cigar_seq_no_operations = Implementation error: {0}th sequence Cigar has no operations.
955 error.implementation_error_jmol_getting_data = Implementation error - Jmol seems to be still working on getting its data - report at http://issues.jalview.org/browse/JAL-1016
956 error.implementation_error_no_pdbentry_from_index = Implementation error - no corresponding pdbentry (for index {0}) to add sequences mappings to
957 error.jmol_version_not_compatible_with_jalview_version = Jmol version {0} is not compatible with this version of Jalview. Report this problem at issues.jalview.org
958 error.not_implemented_remove = Remove: Not implemented
959 error.not_implemented_clone = Clone: Not implemented
960 error.implementation_error_chimera_getting_data = Implementation error - Chimera seems to be still working on getting its data - report at http://issues.jalview.org/browse/JAL-1016
961 error.call_setprogressbar_before_registering_handler = call setProgressBar before registering the progress bar's handler.
962 label.cancelled_params = Cancelled {0}
963 error.implementation_error_cannot_show_view_alignment_frame = Implementation error: cannot show a view from another alignment in an AlignFrame.
964 error.implementation_error_dont_know_about_thereshold_setting = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
965 error.eps_generation_not_implemented = EPS Generation not yet implemented
966 error.png_generation_not_implemented = PNG Generation not yet implemented
967 error.try_join_vamsas_session_another = Trying to join a vamsas session when another is already connected
968 error.invalid_vamsas_session_id = Invalid vamsas session id
969 error.implementation_error_cannot_create_groovyshell = Implementation Error. Cannot create groovyShell without Groovy on the classpath!
970 label.groovy_support_failed = Jalview Groovy Support Failed
971 label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
972 error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
973 error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
974 error.invalid_value_for_option = Invalid value {0} for option {1}
975 error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
976 label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
977 error.implementation_error_vamsas_operation_not_init = Impementation error! Vamsas Operations when client not initialised and connected
978 error.jalview_no_connected_vamsas_session = Jalview not connected to Vamsas session
979 error.implementation_error_cannot_recover_vamsas_object_mappings = IMPLEMENTATION ERROR: Cannot recover vamsas object mappings - no backup was made
980 error.setstatus_called_non_existent_job_pane = setStatus called for non-existent job pane {0}
981 error.implementation_error_cannot_find_marshaller_for_param_set =Implementation error: Can't find a marshaller for the parameter set
982 error.implementation_error_old_jalview_object_not_bound =IMPLEMENTATION ERROR: old jalview object is not bound ! ({0})
983 error.implementation_error_vamsas_doc_class_should_bind_to_type = Implementation Error: Vamsas Document Class {0} should bind to a {1} (found a {2})
984 error.implementation_error_jalview_class_should_bind_to_type = Implementation Error: Jalview Class {0} should bind to a {1} (found a {2})
985 error.invalid_vamsas_rangetype_cannot_resolve_lists = Invalid vamsas RangeType - cannot resolve both lists of Pos and Seg from choice!
986 error.implementation_error_maplist_is_null = Implementation error. MapList is null for initMapType.
987 error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key
988 error.implementation_error_null_fileparse = Implementation error. Null FileParse in copy constructor
989 error.implementation_error_cannot_map_alignment_sequences = IMPLEMENTATION ERROR: Cannot map an alignment of sequences from different datasets into a single alignment in the vamsas document.
990 error.implementation_error_cannot_duplicate_colour_scheme = Serious implementation error: cannot duplicate colourscheme {0}
991 error.implementation_error_structure_selection_manager_null = Implementation error. Structure selection manager's context is 'null'
992 exception.ssm_context_is_null = SSM context is null
993 error.idstring_seqstrings_only_one_per_sequence = idstrings and seqstrings contain one string each per sequence
994 error.cannot_have_mixed_length_replacement_vectors = Cannot have mixed length replacement vectors. Replacement vector for {0} is {1} strings long, and have already seen a {2} length vector.
995 error.cannot_have_zero_length_vector_replacement_strings = Cannot have zero length vector of replacement strings - either 1 value or n values.
996 error.implementation_error_multiple_single_sequence_prediction_jobs_not_supported = Implementation Error! Multiple single sequence prediction jobs are not yet supported
997 error.implementation_error_invalid_msa_index_for_job =Implementation Error! Invalid msaIndex for JPredJob on parent MSA input object!
998 error.implementation_error_startjob_called = Implementation error - StartJob(JpredJob) called on {0}
999 error.multiple_jnet_subjob_merge_not_implemented = Multiple JNet subjob merging not yet implemented
1000 label.job_never_ran = Job never ran - input returned to user.
1001 error.implementation_error_minlen_must_be_greater_zero = Implementation error: minlen must be zero or more
1002 error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0}
1003 error.implementation_error_cannot_attach_ws_menu_entry = IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!
1004 error.parameter_migration_not_implemented_yet = Parameter migration not implemented yet
1005 error.implementation_error_cannot_set_jaba_option = Implementation error: cannot set Jaba Option to a value outside its allowed value range!
1006 error.implementation_error_valuetype_doesnt_support_jabaws_type = IMPLEMENTATION ERROR: jalview.ws.params.ValueConstrainI.ValueType does not support the JABAWS type : {0}
1007 error.cannot_create_jabaws_param_set = Cannot create a JabaWSParamSet from non-JabaWS parameters
1008 error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaWSParamSet that are not JabaWS arguments
1009 error.implementation_error_runner_config_not_available = Implementation Error: Runner Config not available for a JABAWS service of type {0} ({1})
1010 error.implementation_error_cannot_handle_jaba_param = Implementation Error: Cannot handle Jaba parameter object {0}
1011 error.implementation_error_attempt_to_delete_service_preset = Implementation error: Attempt to delete a service preset!
1012 error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can't locate either oldname ({0}) or presetName ({1}in the datastore!"
1013 error.implementation_error_jabaws_param_set_only_handled_by = Implementation error: JabaWsParamSets can only be handled by JabaParamStore
1014 error.cannot_set_source_file_for = Cannot set source file for {0}
1015 error.mismatch_service_instance_preset = Probable mismatch between service instance and preset!
1016 error.cannot_set_params_for_ws_preset = Cannot set Parameters for a Jaba Web service's preset
1017 error.implementation_error_can_only_instantiate_jaba_param_sets = Implementation error: Can only instantiate Jaba parameter sets
1018 error.no_aacon_service_found = No AACon service found
1019 error.implementation_error_couldnt_copy_value_constraint = Implementation error: could not copy ValueConstrain!
1020 error.couldnt_encode_as_utf8 = Couldn't encode {0} as UTF-8.
1021 error.tree_inputtype_not_yet_implemented = Tree InputType not yet implemented
1022 error.implementation_error_need_to_have_httpresponse = Implementation Error: need to have an HttpResponse to process
1023 error.dbrefsource_implementation_exception =DBRefSource Implementation Exception
1024 error.implementation_error_dbinstance_must_implement_interface = Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given{0})
1025 error.implementation_error_must_init_dbsources =Implementation error. Must initialise dbSources
1026 label.view_controller_toggled_marked = {0} {1} columns {2} containing features of type {3}  across {4} sequence(s)
1027 label.toggled = Toggled
1028 label.marked = Marked
1029 label.not = not
1030 label.no_feature_of_type_found = No features of type {0} found.
1031 label.submission_params = Submission {0}
1032 label.empty_alignment_job = Empty Alignment Job
1033 label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
1034 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
1035 label.pca_recalculating = Recalculating PCA
1036 label.pca_calculating = Calculating PCA
1037 label.select_foreground_colour = Choose foreground colour
1038 label.select_colour_for_text = Select Colour for Text
1039 label.adjunst_foreground_text_colour_thereshold = Adjust Foreground Text Colour Threshold
1040 label.select_subtree_colour = Select Sub-Tree Colour
1041 label.create_new_sequence_features = Create New Sequence Feature(s)
1042 label.amend_delete_features = Amend/Delete Features for {0}
1043 exception.out_of_bounds_for_file = Out of bounds for file: i={0}, Final Buffer: i0={1} iend={2}
1044 exception.null_string_given_to_regex_search = Null String Given to Regex.search
1045 exception.null_string_like_given_to_regex_search = Null StringLike Given to Regex.search
1046 exception.null_string_given_to_regex_reverse_search = Null String Given to Regex.reverseSearch
1047 exception.null_string_like_given_to_regex_reverse_search = Null StringLike Given to Regex.reverseSearch
1048 exception.null_string_like_given_to_regex_search_from = Null String Given to Regex.searchFrom
1049 exception.null_string_like_given_to_regex_search_region = Null String Given to Regex.searchRegion
1050 exception.replace_null_regex_pointer = Replacer has null Regex pointer
1051 exception.bad_pattern_to_regex_perl_code = bad pattern to Regex.perlCode: {0}
1052 exception.no_stub_implementation_for_interface = There is no stub implementation for the interface: {0}
1053 exception.cannot_set_endpoint_address_unknown_port = Cannot set Endpoint Address for Unknown Port {0}
1054 exception.querying_matching_opening_parenthesis_for_non_closing_parenthesis = Querying matching opening parenthesis for non-closing parenthesis character {0}
1055 exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character {0}
1056 exception.mismatched_closing_char = Mismatched closing character {0}
1057 exception.mismatched_opening_char = Mismatched opening character {0} at {1}
1058 exception.invalid_datasource_couldnt_obtain_reader = Invalid datasource. Could not obtain Reader
1059 exception.index_value_not_in_range = {0}: Index value {1} not in range [0..{2}]
1060 exception.unterminated_cigar_string = Unterminated cigar string
1061 exception.unexpected_operation_cigar_string_pos = Unexpected operation {0} in cigar string (position {1} in {2}
1062 exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse response from Annotate3d server
1063 exception.application_test_npe = Application test: throwing an NullPointerException It should arrive at the console
1064 exception.overwriting_vamsas_id_binding = Overwriting vamsas id binding
1065 exception.overwriting_jalview_id_binding = Overwriting jalview id binding
1066 error.implementation_error_unknown_file_format_string = Implementation error: Unknown file format string
1067 exception.failed_to_resolve_gzip_stream = Failed to resolve GZIP stream
1068 exception.problem_opening_file_also_tried = Problem opening {0} (also tried {1}) : {2}
1069 exception.problem_opening_file = Problem opening {0} : {1}
1070 exception.failed_to_read_data_from_source = Failed to read data from source: {0}
1071 exception.no_init_source_stream = Unitialised Source Stream
1072 exception.invalid_source_stream = Invalid Source Stream: {0}
1073 error.implementation_error_reset_called_for_invalid_source = Implementation Error: Reset called for invalid source.
1074 exception.number_of_residues_in_query_sequence_differ_from_prediction = Number of residues in {0} supposed query sequence ({1}\n{2})\ndiffer from number of prediction sites in prediction ({3})
1075 label.mapped = mapped
1076 exception.jpredconcide_entry_has_unexpected_number_of_columns = JPredConcise: Entry ({0}) has an unexpected number of columns
1077 exception.couldnt_parse_concise_annotation_for_prediction = Couldn't parse concise annotation for prediction profile.\n{0}
1078 exception.newfile = NewickFile\: {0}\n
1079 label.no_tree_read_in = No Tree read in
1080 exception.rnaml_couldnt_access_datasource = Couldn't access datasource ({0})
1081 exception.ranml_couldnt_process_data = Couldn't process data as RNAML file ({0})
1082 exception.ranml_invalid_file = Invalid RNAML file ({0})
1083 exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0})
1084 exception.pfam_no_sequences_found = No sequences found (PFAM input)
1085 exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM'
1086 exception.couldnt_parse_sequence_line = Could not parse sequence line: {0}
1087 exception.error_parsing_line = Error parsing {0}
1088 exception.unknown_annotation_detected = Unknown annotation detected: {0} {1}
1089 exception.couldnt_store_sequence_mappings = Couldn't store sequence mappings for {0}
1090 exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1})
1091 exception.browser_not_found = Exception in finding browser: {0}
1092 exception.browser_unable_to_locate = Unable to locate browser: {0}
1093 exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0}
1094 exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0}
1095 exception.instantiation_creating_aedesc = InstantiationException while creating AEDesc: {0}
1096 exception.unable_to_launch_url = Unable to launch URL: {0}
1097 exception.unable_to_create_internet_config = Unable to create an Internet Config instance: {0}
1098 exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0}
1099 exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0}
1100 exception.interrupted_launching_browser = InterruptedException while launching browser: {0}
1101 exception.das_source_doesnt_support_sequence_command = Source {0} does not support the sequence command.
1102 exception.invalid_das_source = Invalid das source: {0}
1103 exception.ebiembl_retrieval_failed_on = EBI EMBL XML retrieval failed on {0}:{1}
1104 label.no_embl_record_found = # No EMBL record retrieved for {0}:{1}
1105 label.embl_successfully_parsed = # Successfully parsed the {0} queries into an Alignment
1106 exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1}
1107 exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data
1108 exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment
1109 exception.unknown_format_for_file = Unknown format {0} for file \: \n{1}
1110 label.remove_gaps = Remove Gaps
1111 exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JNet Query sequence!
1112 exception.server_timeout_try_later = Server timed out - try again later\n
1113 exception.web_service_returned_null_try_later= Server at {0} returned null object, it probably cannot be contacted. Try again later.
1114 exception.cannot_contact_service_endpoint_at = Cannot contact service endpoint at {0}
1115 error.implementation_error_cannot_find_service_url_in_given_set = Implementation error: Cannot find service url in the given url set!
1116 error.implementation_error_cannot_find_service_url_in_given_set_param_store = Implementation error: Cannot find service url in the given url set for this service parameter store ({0}}
1117 exception.jobsubmission_invalid_params_set = Invalid parameter set. Check Jalview implementation
1118 exception.notvaliddata_group_contains_less_than_min_seqs = Group contains less than {0} sequences.
1119 exception.outofmemory_loading_pdb_file = Out of memory loading PDB File
1120 exception.eps_coudnt_write_output_file = Could not write to the output file: {0}
1121 exception.eps_method_not_supported = Method not currently supported by EpsGraphics2D version {0}
1122 exception.eps_unable_to_get_inverse_matrix = Unable to get inverse of matrix: {0}
1123 warn.job_cannot_be_cancelled_close_window = This job cannot be cancelled.\nJust close the window.
1124 warn.service_not_supported = Service not supported!
1125 warn.input_is_too_big = Input is too big!
1126 warn.invalid_job_param_set = Invalid job parameter set!
1127 warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ?   
1128 info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0}
1129 info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0}
1130 info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n
1131 info.no_jobs_ran = No jobs ran
1132 info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1}
1133 info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data\!\n{2}
1134 info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n
1135 info.alignment_object_method_notes = \nAlignment Object Method Notes\n
1136 info.server_exception = \n{0} Server exception\!\n{1}
1137 info.invalid_msa_input_mininfo = Need at least two sequences with at least 3 residues each, with no hidden regions between them.  
1138 info.invalid_msa_notenough = Not enough sequence data to align
1139 status.processing_commandline_args = Processing commandline arguments...
1140 status.das_features_being_retrived = DAS features being retrieved...
1141 status.searching_for_sequences_from = Searching for sequences from {0}
1142 status.finished_searching_for_sequences_from = Finished searching for sequences from {0}
1143 label.eps_file = EPS file
1144 label.png_image = PNG image
1145 status.saving_file = Saving {0}
1146 status.export_complete = {0} Export completed.
1147 status.fetching_pdb = Fetching PDB {0}
1148 status.refreshing_news = Refreshing news
1149 status.importing_vamsas_session_from = Importing VAMSAS session from {0}
1150 status.opening_params = Opening {0}
1151 status.waiting_sequence_database_fetchers_init = Waiting for Sequence Database Fetchers to initialise
1152 status.init_sequence_database_fetchers = Initialising Sequence Database Fetchers
1153 status.fetching_sequence_queries_from = Fetching {0} sequence queries from {1}
1154 status.finshed_querying = Finished querying
1155 status.parsing_results = Parsing results.
1156 status.processing = Processing...
1157 status.refreshing_web_service_menus = Refreshing Web Service Menus
1158 status.collecting_job_results = Collecting job results.
1159 status.fetching_das_sequence_features = Fetching DAS Sequence Features
1160 status.no_das_sources_active = No DAS Sources Active
1161 status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled
1162 status.das_feature_fetching_complete = DAS Feature Fetching Complete
1163 status.fetching_db_refs = Fetching db refs
1164 status.loading_cached_pdb_entries = Loading Cached PDB Entries
1165 status.searching_for_pdb_structures = Searching for PDB Structures
1166 status.opening_file = opening file
1167 status.colouring_chimera = Colouring Chimera
1168 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
1169 label.font_too_small = Font size is too small
1170 label.error_loading_file_params = Error loading file {0}
1171 label.error_loading_jalview_file = Error loading Jalview file
1172 warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1173 warn.out_of_memory_loading_file = Out of memory loading file {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1174 label.out_of_memory = Out of memory
1175 label.invalid_id_column_width = Invalid ID Column width
1176 warn.user_defined_width_requirements = The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide.
1177 label.couldnt_create_sequence_fetcher = Couldn't create SequenceFetcher
1178 warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details.
1179 warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
1180 warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQUENCE_ID=/<regex>/=$
1181 warn.urls_not_contacted = URLs that could not be contacted
1182 warn.urls_no_jaba = URLs without any JABA Services
1183 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
1184 label.test_server = Test Server?
1185 info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names?
1186 label.find_uniprot_accession_ids = Find Uniprot Accession Ids
1187 label.new_sequence_fetcher = New Sequence Fetcher
1188 label.additional_sequence_fetcher = Additional Sequence Fetcher
1189 label.select_database_retrieval_source = Select Database Retrieval Source
1190 label.overwrite_existing_file = Overwrite existing file?
1191 label.file_already_exists = File exists
1192 label.edit_jabaws_url = Edit JABAWS URL
1193 label.add_jabaws_url = Add new JABAWS URL
1194 label.news_from_jalview = News from http://www.jalview.org
1195 label.cut_paste_alignmen_file = Cut & Paste Alignment File
1196 label.enter_redundancy_thereshold = Enter the redundancy threshold
1197 label.select_dark_light_set_thereshold = <html><i>Select a dark and light text colour, then set the threshold to<br>switch between colours, based on background colour</i></html>
1198 label.select_feature_colour = Select Feature Colour
1199 label.delete_all = Delete all sequences
1200 warn.delete_all = <html>Deleting all sequences will close the alignment window.<br>Confirm deletion or Cancel.
1201 label.add_annotations_for = Add annotations for
1202 action.choose_annotations = Choose Annotations...
1203 label.choose_annotations = Choose Annotations
1204 label.find = Find
1205 label.invalid_search = Search string invalid
1206 error.invalid_regex = Invalid regular expression
1207 label.ignore_gaps_consensus = Ignore Gaps In Consensus
1208 label.show_group_histogram = Show Group Histogram
1209 label.show_group_logo = Show Group Logo
1210 label.normalise_group_logo = Normalise Group Logo
1211 label.show_histogram = Show Histogram
1212 label.show_logo = Show Logo
1213 label.normalise_logo = Normalise Logo
1214 label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme
1215 label.no_colour_selection_warn = Error saving colour scheme
1216 label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
1217 label.open_split_window = Open split window
1218 label.no_mappings = No mappings found
1219 action.no = No
1220 action.yes = Yes
1221 label.for = for
1222 label.select_by_annotation = Select/Hide Columns by Annotation
1223 action.select_by_annotation = Select/Hide Columns by Annotation...
1224 label.threshold_filter =  Threshold Filter
1225 action.hide = Hide
1226 action.select = Select
1227 label.alpha_helix = Alpha Helix
1228 label.beta_strand = Beta Strand
1229 label.turn = Turn
1230 label.select_all = Select All
1231 label.structures_filter = Structures Filter
1232 label.search_filter = Search Filter
1233 label.description = Description
1234 label.include_description= Include Description
1235 action.back = Back
1236 label.hide_insertions = Hide Insertions
1237 label.mark_as_representative = Mark as representative
1238 label.open_jabaws_web_page = Open JABAWS web page
1239 label.opens_the_jabaws_server_homepage = Opens the JABAWS server's homepage in web browser
1240 label.pdb_sequence_getcher = PDB Sequence Fetcher
1241 label.result = result
1242 label.results = results
1243 label.structure_chooser = Structure Chooser
1244 label.select = Select : 
1245 label.invert = Invert 
1246 label.select_pdb_file = Select PDB File
1247 info.select_filter_option = Select Filter Option/Manual Entry
1248 info.associate_wit_sequence = Associate with Sequence
1249 label.search_result = Search Result
1250 label.found_structures_summary = Found Structures Summary
1251 label.configure_displayed_columns = Configure Displayed Columns
1252 label.start_jalview = Start Jalview
1253 label.biojs_html_export = BioJS
1254 label.scale_as_cdna = Scale protein residues to codons
1255 label.scale_protein_to_cdna = Scale Protein to cDNA
1256 label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
1257 info.select_annotation_row = Select Annotation Row
1258 info.enter_search_text_here = Enter Search Text Here
1259 info.enter_search_text_to_enable = Enter Search Text to Enable
1260 info.search_in_annotation_label = Search in {0} Label
1261 info.search_in_annotation_description = Search in {0} Description
1262 info.change_threshold_mode_to_enable = Change Threshold Mode to Enable
1263 label.couldnt_read_data = Couldn't read data
1264 label.embbed_biojson = Embed BioJSON to HTML export
1265 action.export_groups = Export Groups
1266 action.export_annotations = Export Annotations
1267 action.export_hidden_columns = Export Hidden Columns
1268 action.export_hidden_sequences = Export Hidden Sequences
1269 action.export_features = Export Features
1270 label.export_settings = Export Settings
1271 label.save_as_biojs_html = Save as BioJs HTML
1272 label.pdb_web-service_error = PDB Web-service Error
1273 label.structure_chooser_manual_association = Structure Chooser - Manual association
1274 label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
1275 label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
1276 info.no_pdb_entry_found_for = No PDB entry found for {0}
1277 exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
1278 exception.pdb_rest_service_no_longer_available = PDB rest services no longer available!
1279 exception.resource_not_be_found = The requested resource could not be found
1280 exception.pdb_server_error = There seems to be an error from the PDB server
1281 exception.pdb_server_unreachable = Jalview is unable to reach the PDBe Solr server. \nPlease ensure that you are connected to the internet and try again.
1282 label.nw_mapping = Needleman & Wunsch Alignment
1283 label.sifts_mapping = SIFTs Mapping
1284 label.mapping_method = Sequence \u27f7 Structure mapping method
1285 status.waiting_for_user_to_select_output_file = Waiting for user to select {0} file.
1286 status.cancelled_image_export_operation = Cancelled {0} export operation.
1287 info.error_creating_file = Error creating {0} file.