schemas/sifts/dataTypes.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <xsd:schema targetNamespace="http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd"
   3         elementFormDefault="qualified" attributeFormDefault="unqualified" version="2.0"
   4         xmlns:xsd="http://www.w3.org/2001/XMLSchema"
   5         xmlns="http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd">
   6         <xsd:simpleType name="entityType">
   7                 <xsd:restriction base="xsd:string">
   8                         <xsd:enumeration value="protein"/>
   9                         <xsd:enumeration value="RNA"/>
  10                         <xsd:enumeration value="DNA"/>
  11                         <xsd:enumeration value="domain"/>
  12                 </xsd:restriction>
  13         </xsd:simpleType>
  14         <xsd:simpleType name="dbChainId">
  15                 <xsd:restriction base="xsd:string">
  16                         <xsd:minLength value="1"/>
  17                         <xsd:maxLength value="2"/>
  18                 </xsd:restriction>
  19         </xsd:simpleType>
  20         <xsd:simpleType name="chainId">
  21                 <xsd:restriction base="xsd:string">
  22                         <xsd:minLength value="1"/>
  23                         <xsd:maxLength value="1"/>
  24                 </xsd:restriction>
  25         </xsd:simpleType>
  26         <xsd:simpleType name="cigarstring">
  27                 <xsd:restriction base="xsd:string">
  28                         <xsd:minLength value="1"/>
  29                         <xsd:whiteSpace value="collapse"/>
  30                         <xsd:pattern value="(\d{0,5}\w{1})*"/>
  31                 </xsd:restriction>
  32         </xsd:simpleType>
  33         <xsd:attributeGroup name="dbRef">
  34                 <xsd:attribute name="dbSource" use="required">
  35                         <xsd:simpleType>
  36                                 <xsd:restriction base="xsd:string">
  37                                         <xsd:enumeration value="PDBe"/>
  38                                         <xsd:enumeration value="UniProt"/>
  39                                         <xsd:enumeration value="Pfam"/>
  40                                         <xsd:enumeration value="CATH"/>
  41                                         <xsd:enumeration value="SCOP"/>
  42                                         <xsd:enumeration value="InterPro"/>
  43                                         <xsd:enumeration value="PDB"/>
  44                                         <xsd:enumeration value="NCBI"/>
  45                                         <xsd:enumeration value="EC"/>
  46                                         <xsd:enumeration value="GO"/>
  47                                         <xsd:enumeration value="Astral"/>
  48                                 </xsd:restriction>
  49                         </xsd:simpleType>
  50                 </xsd:attribute>
  51                 <xsd:attribute name="dbCoordSys" use="required">
  52                         <xsd:simpleType>
  53                                 <xsd:restriction base="xsd:string">
  54                                         <xsd:enumeration value="PDBe"/>
  55                                         <xsd:enumeration value="PDBseqres"/>
  56                                         <xsd:enumeration value="PDBresnum"/>
  57                                         <xsd:enumeration value="UniProt"/>
  58                                         <xsd:enumeration value="Astral"/>
  59                                 </xsd:restriction>
  60                         </xsd:simpleType>
  61                 </xsd:attribute>
  62                 <xsd:attribute name="dbAccessionId" type="xsd:string" use="required"/>
  63                 <xsd:attribute name="dbEvidence" type="xsd:string"/>
  64                 <xsd:attribute name="dbVersion" type="xsd:string" use="optional"/>
  65         </xsd:attributeGroup>
  66         <xsd:attributeGroup name="resRef">
  67                 <xsd:attribute name="dbResNum" use="required">
  68                         <xsd:simpleType>
  69                                 <xsd:restriction base="xsd:string">
  70                                         <xsd:minLength value="1"/>
  71                                         <xsd:pattern value="-?\d+(\S+)?"/>
  72                                 </xsd:restriction>
  73                         </xsd:simpleType>
  74                 </xsd:attribute>
  75                 <xsd:attribute name="dbResName" use="required">
  76                         <xsd:simpleType>
  77                                 <xsd:restriction base="xsd:string">
  78                                         <xsd:minLength value="1"/>
  79                                         <xsd:maxLength value="3"/>
  80                                         <xsd:pattern value="\w{1,3}"/>
  81                                 </xsd:restriction>
  82                         </xsd:simpleType>
  83                 </xsd:attribute>
  84         </xsd:attributeGroup>
  85         <xsd:attributeGroup name="detail">
  86                 <xsd:attribute name="dbSource" use="optional">
  87                         <xsd:simpleType>
  88                                 <xsd:restriction base="xsd:string">
  89                                         <xsd:enumeration value="PDBe"/>
  90                                         <xsd:enumeration value="UniProt"/>
  91                                         <xsd:enumeration value="Pfam"/>
  92                                         <xsd:enumeration value="CATH"/>
  93                                         <xsd:enumeration value="SCOP"/>
  94                                         <xsd:enumeration value="InterPro"/>
  95                                         <xsd:enumeration value="PDB"/>
  96                                         <xsd:enumeration value="NCBI"/>
  97                                         <xsd:enumeration value="EC"/>
  98                                         <xsd:enumeration value="GO"/>
  99                                         <xsd:enumeration value="Astral"/>
 100                                 </xsd:restriction>
 101                         </xsd:simpleType>
 102                 </xsd:attribute>
 103                 <xsd:attribute name="property" type="xsd:string" use="required"/>
 104         </xsd:attributeGroup>
 105         <xsd:attributeGroup name="region">
 106                 <xsd:attribute name="start" use="optional">
 107                         <xsd:simpleType>
 108                                 <xsd:restriction base="xsd:string">
 109                                         <xsd:minLength value="1"/>
 110                                         <xsd:pattern value="-?\d+(.\S)?"/>
 111                                 </xsd:restriction>
 112                         </xsd:simpleType>
 113                 </xsd:attribute>
 114                 <xsd:attribute name="end" use="optional">
 115                         <xsd:simpleType>
 116                                 <xsd:restriction base="xsd:string">
 117                                         <xsd:minLength value="1"/>
 118                                         <xsd:pattern value="-?\d+(.\S)?"/>
 119                                 </xsd:restriction>
 120                         </xsd:simpleType>
 121                 </xsd:attribute>
 122         </xsd:attributeGroup>
 123         <xsd:attributeGroup name="listdbRef">
 124                 <xsd:attribute name="dbVersion" type="xsd:string" use="optional"/>
 125                 <xsd:attribute name="dbSource" use="required">
 126                         <xsd:simpleType>
 127                                 <xsd:restriction base="xsd:string">
 128                                         <xsd:enumeration value="PDBe"/>
 129                                         <xsd:enumeration value="UniProt"/>
 130                                         <xsd:enumeration value="Pfam"/>
 131                                         <xsd:enumeration value="CATH"/>
 132                                         <xsd:enumeration value="SCOP"/>
 133                                         <xsd:enumeration value="InterPro"/>
 134                                         <xsd:enumeration value="PDB"/>
 135                                         <xsd:enumeration value="NCBI"/>
 136                                         <xsd:enumeration value="EC"/>
 137                                         <xsd:enumeration value="GO"/>
 138                                         <xsd:enumeration value="Astral"/>
 139                                 </xsd:restriction>
 140                         </xsd:simpleType>
 141                 </xsd:attribute>
 142                 <xsd:attribute name="dbCoordSys" use="required">
 143                         <xsd:simpleType>
 144                                 <xsd:restriction base="xsd:string">
 145                                         <xsd:enumeration value="PDBe"/>
 146                                         <xsd:enumeration value="PDBseqres"/>
 147                                         <xsd:enumeration value="PDBresnum"/>
 148                                         <xsd:enumeration value="UniProt"/>
 149                                         <xsd:enumeration value="Astral"/>
 150                                 </xsd:restriction>
 151                         </xsd:simpleType>
 152                 </xsd:attribute>
 153         </xsd:attributeGroup>
 154 </xsd:schema>