schemas/vamsas.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
   3 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
   4         <xs:complexType name="VAMSAS">
   5                 <xs:sequence>
   6                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
   7                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
   8                 </xs:sequence>
   9         </xs:complexType>
  10         <xs:element name="SequenceSet">
  11                 <xs:complexType>
  12                         <xs:sequence>
  13                                 <xs:element name="Sequence" minOccurs="0" maxOccurs="unbounded">
  14                                         <xs:complexType>
  15                                                 <xs:complexContent>
  16                                                         <xs:extension base="vamsas:SequenceType">
  17                                                                 <xs:sequence>
  18                                                                         <xs:element name="DBRef" minOccurs="0" maxOccurs="unbounded">
  19                                                                                 <xs:complexType>
  20                                                                                         <xs:attribute name="source" type="xs:string"/>
  21                                                                                         <xs:attribute name="version" type="xs:string"/>
  22                                                                                         <xs:attribute name="accessionId" type="xs:string"/>
  23                                                                                 </xs:complexType>
  24                                                                         </xs:element>
  25                                                                 </xs:sequence>
  26                                                         </xs:extension>
  27                                                 </xs:complexContent>
  28                                         </xs:complexType>
  29                                 </xs:element>
  30                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
  31                                         <xs:complexType>
  32                                                 <xs:sequence>
  33                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
  34                                                         <xs:element name="label" type="xs:string"/>
  35                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>
  36                                                         <xs:element name="thresholdLine" minOccurs="0">
  37                                                                 <xs:complexType>
  38                                                                         <xs:attribute name="label" type="xs:string"/>
  39                                                                         <xs:attribute name="value" type="xs:float"/>
  40                                                                         <xs:attribute name="colour" type="xs:int"/>
  41                                                                 </xs:complexType>
  42                                                         </xs:element>
  43                                                 </xs:sequence>
  44                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>
  45                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>
  46                                                 <xs:attribute name="sequenceRef" type="xs:string" use="optional"/>
  47                                                 <xs:attribute name="graphColour" type="xs:int" use="optional"/>
  48                                                 <xs:attribute name="graphGroup" type="xs:int" use="optional"/>
  49                                                 <xs:attribute name="id" type="xs:string" use="optional"/>
  50                                                 <xs:attribute name="scoreOnly" type="xs:boolean" use="optional" default="false"/>
  51                                                 <xs:attribute name="score" type="xs:float" use="optional"/>
  52                                         </xs:complexType>
  53                                 </xs:element>
  54                         </xs:sequence>
  55                         <xs:attribute name="gapChar" type="xs:string" use="required"/>
  56                 </xs:complexType>
  57         </xs:element>
  58         <xs:element name="annotationElement">
  59                 <xs:complexType>
  60                         <xs:sequence>
  61                                 <xs:element name="displayCharacter" type="xs:string" minOccurs="0"/>
  62                                 <xs:element name="description" type="xs:string" minOccurs="0"/>
  63                                 <xs:element name="secondaryStructure" minOccurs="0">
  64                                         <xs:simpleType>
  65                                                 <xs:restriction base="xs:string">
  66                                                         <xs:length value="1"/>
  67                                                 </xs:restriction>
  68                                         </xs:simpleType>
  69                                 </xs:element>
  70                                 <xs:element name="value" type="xs:float" minOccurs="0"/>
  71                         </xs:sequence>
  72                         <xs:attribute name="position" type="xs:int" use="required"/>
  73                         <xs:attribute name="colour" type="xs:int" use="optional"/>
  74                 </xs:complexType>
  75         </xs:element>
  76         <xs:complexType name="SequenceType">
  77                 <xs:sequence>
  78                         <xs:element name="sequence" type="xs:string" minOccurs="0"/>
  79                         <xs:element name="name" type="xs:string" minOccurs="0"/>
  80                 </xs:sequence>
  81                 <xs:attribute name="id" type="xs:string"/>
  82                 <xs:attribute name="description" type="xs:string"/>
  83         </xs:complexType>
  84 </xs:schema>