schemas/vamsasJvV1.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!--
   3   Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
   4   Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
   5
   6   This file is part of Jalview.
   7
   8   Jalview is free software: you can redistribute it and/or
   9   modify it under the terms of the GNU General Public License
  10   as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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  12   Jalview is distributed in the hope that it will be useful, but
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  15   PURPOSE.  See the GNU General Public License for more details.
  16
  17   You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  18 -->
  19 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
  20 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
  21         <xs:complexType name="VAMSAS">
  22                 <xs:sequence>
  23                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
  24                                 <xs:complexType>
  25                                         <xs:sequence>
  26                                                 <xs:element name="Annotation" minOccurs="0">
  27                                                         <xs:complexType>
  28                                                                 <xs:sequence>
  29                                                                         <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
  30                                                                         <xs:element name="label" type="xs:string"/>
  31                                                                         <xs:element name="description" type="xs:string"/>
  32                                                                 </xs:sequence>
  33                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>
  34                                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>
  35                                                         </xs:complexType>
  36                                                 </xs:element>
  37                                                 <xs:element ref="vamsas:SequenceSet"/>
  38                                         </xs:sequence>
  39                                 </xs:complexType>
  40                         </xs:element>
  41                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
  42                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
  43                 </xs:sequence>
  44         </xs:complexType>
  45         <xs:element name="SequenceSet">
  46                 <xs:complexType>
  47                         <xs:sequence>
  48                                 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
  49                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
  50                                         <xs:complexType>
  51                                                 <xs:sequence>
  52                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>
  53                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>
  54                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
  55                                                 </xs:sequence>
  56                                                 <xs:attribute name="type" type="xs:string" use="required"/>
  57                                                 <xs:attribute name="end" type="xs:string" use="required"/>
  58                                                 <xs:attribute name="begin" type="xs:string" use="required"/>
  59                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>
  60                                         </xs:complexType>
  61                                 </xs:element>
  62                         </xs:sequence>
  63                         <xs:attribute name="gapChar" type="xs:string" use="required"/>
  64                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
  65                 </xs:complexType>
  66         </xs:element>
  67         <xs:element name="annotationElement">
  68                 <xs:complexType>
  69                         <xs:sequence>
  70                                 <xs:element name="displayCharacter" type="xs:string"/>
  71                                 <xs:element name="description" type="xs:string"/>
  72                                 <xs:element name="secondaryStructure">
  73                                         <xs:simpleType>
  74                                                 <xs:restriction base="xs:string">
  75                                                         <xs:length value="1"/>
  76                                                 </xs:restriction>
  77                                         </xs:simpleType>
  78                                 </xs:element>
  79                                 <xs:element name="value" type="xs:float"/>
  80                         </xs:sequence>
  81                         <xs:attribute name="position" type="xs:int" use="required"/>
  82                 </xs:complexType>
  83         </xs:element>
  84         <xs:complexType name="SequenceType">
  85                 <xs:sequence>
  86                         <xs:element name="sequence" type="xs:string"/>
  87                         <xs:element name="name" type="xs:string"/>
  88                 </xs:sequence>
  89                 <xs:attribute name="id" type="xs:string"/>
  90         </xs:complexType>
  91 </xs:schema>