schemas/vamsasJvV1.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <!--\r
   3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
   4  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle\r
   5  * \r
   6  * This file is part of Jalview.\r
   7  * \r
   8  * Jalview is free software: you can redistribute it and/or\r
   9  * modify it under the terms of the GNU General Public License \r
  10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
  11  * \r
  12  * Jalview is distributed in the hope that it will be useful, but \r
  13  * WITHOUT ANY WARRANTY; without even the implied warranty \r
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
  15  * PURPOSE.  See the GNU General Public License for more details.\r
  16  * \r
  17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.\r
  18 -->\r
  19 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->\r
  20 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
  21         <xs:complexType name="VAMSAS">\r
  22                 <xs:sequence>\r
  23                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
  24                                 <xs:complexType>\r
  25                                         <xs:sequence>\r
  26                                                 <xs:element name="Annotation" minOccurs="0">\r
  27                                                         <xs:complexType>\r
  28                                                                 <xs:sequence>\r
  29                                                                         <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>\r
  30                                                                         <xs:element name="label" type="xs:string"/>\r
  31                                                                         <xs:element name="description" type="xs:string"/>\r
  32                                                                 </xs:sequence>\r
  33                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
  34                                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>\r
  35                                                         </xs:complexType>\r
  36                                                 </xs:element>\r
  37                                                 <xs:element ref="vamsas:SequenceSet"/>\r
  38                                         </xs:sequence>\r
  39                                 </xs:complexType>\r
  40                         </xs:element>\r
  41                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
  42                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
  43                 </xs:sequence>\r
  44         </xs:complexType>\r
  45         <xs:element name="SequenceSet">\r
  46                 <xs:complexType>\r
  47                         <xs:sequence>\r
  48                                 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>\r
  49                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
  50                                         <xs:complexType>\r
  51                                                 <xs:sequence>\r
  52                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  53                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>\r
  54                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
  55                                                 </xs:sequence>\r
  56                                                 <xs:attribute name="type" type="xs:string" use="required"/>\r
  57                                                 <xs:attribute name="end" type="xs:string" use="required"/>\r
  58                                                 <xs:attribute name="begin" type="xs:string" use="required"/>\r
  59                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
  60                                         </xs:complexType>\r
  61                                 </xs:element>\r
  62                         </xs:sequence>\r
  63                         <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
  64                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
  65                 </xs:complexType>\r
  66         </xs:element>\r
  67         <xs:element name="annotationElement">\r
  68                 <xs:complexType>\r
  69                         <xs:sequence>\r
  70                                 <xs:element name="displayCharacter" type="xs:string"/>\r
  71                                 <xs:element name="description" type="xs:string"/>\r
  72                                 <xs:element name="secondaryStructure">\r
  73                                         <xs:simpleType>\r
  74                                                 <xs:restriction base="xs:string">\r
  75                                                         <xs:length value="1"/>\r
  76                                                 </xs:restriction>\r
  77                                         </xs:simpleType>\r
  78                                 </xs:element>\r
  79                                 <xs:element name="value" type="xs:float"/>\r
  80                         </xs:sequence>\r
  81                         <xs:attribute name="position" type="xs:int" use="required"/>\r
  82                 </xs:complexType>\r
  83         </xs:element>\r
  84         <xs:complexType name="SequenceType">\r
  85                 <xs:sequence>\r
  86                         <xs:element name="sequence" type="xs:string"/>\r
  87                         <xs:element name="name" type="xs:string"/>\r
  88                 </xs:sequence>\r
  89                 <xs:attribute name="id" type="xs:string"/>\r
  90         </xs:complexType>\r
  91 </xs:schema>\r