src/jalview/appletgui/TreePanel.java

   1 package jalview.appletgui;\r
   2 \r
   3 import jalview.datamodel.*;\r
   4 import jalview.analysis.*;\r
   5 import jalview.jbappletgui.GTreePanel;\r
   6 import java.awt.event.*;\r
   7 import java.util.*;\r
   8 \r
   9 \r
  10 public class TreePanel extends GTreePanel\r
  11 {\r
  12   SequenceI[] seq;\r
  13   String type;\r
  14   String pwtype;\r
  15   AlignViewport av;\r
  16   int start;\r
  17   int end;\r
  18   TreeCanvas treeCanvas;\r
  19   NJTree tree;\r
  20 \r
  21   public NJTree getTree()\r
  22   {\r
  23     return tree;\r
  24   }\r
  25 \r
  26   public TreePanel(AlignViewport av, Vector seqVector, String type, String pwtype, int s, int e)\r
  27   {\r
  28     super();\r
  29 \r
  30     this.type = type;\r
  31     this.pwtype = pwtype;\r
  32 \r
  33     start = s;\r
  34     end = e;\r
  35 \r
  36     String longestName = "";\r
  37     seq = new Sequence [seqVector.size()];\r
  38     for (int i=0;i < seqVector.size();i++)\r
  39     {\r
  40       seq[i] = (Sequence) seqVector.elementAt(i);\r
  41       if(seq[i].getName().length()>longestName.length())\r
  42         longestName = seq[i].getName();\r
  43     }\r
  44 \r
  45     tree = new NJTree(seq, type, pwtype, start, end);\r
  46 \r
  47     treeCanvas = new TreeCanvas(av, tree, scrollPane, longestName);\r
  48 \r
  49     tree.reCount(tree.getTopNode());\r
  50     tree.findHeight(tree.getTopNode());\r
  51     scrollPane.add(treeCanvas);\r
  52 \r
  53   }\r
  54 \r
  55 \r
  56 public String getText(String format) {\r
  57   return null;\r
  58 }\r
  59 \r
  60   protected void fitToWindow_actionPerformed(ActionEvent e)\r
  61   {\r
  62     treeCanvas.fitToWindow = fitToWindow.getState();\r
  63     repaint();\r
  64   }\r
  65 \r
  66 \r
  67   protected void fontSize_actionPerformed(ActionEvent e)\r
  68   {\r
  69  /*   if( treeCanvas==null )\r
  70      return;\r
  71 \r
  72    String size = fontSize.getLabel().substring( fontSize.getLabel().indexOf("-")+1);\r
  73 \r
  74    Object selection = JOptionPane.showInternalInputDialog(Desktop.desktop,\r
  75                                "Select font size",\r
  76                                "Font size",\r
  77                                JOptionPane.QUESTION_MESSAGE,\r
  78                                null, new String[]{"1","2","4","6","8","10","12","14","16","18","20"}\r
  79                                ,"Font Size - "+size);\r
  80    if(selection!=null)\r
  81    {\r
  82      fontSize.setText("Font Size - " + selection);\r
  83 \r
  84      int i = Integer.parseInt(selection.toString());\r
  85      treeCanvas.setFontSize(i);\r
  86    }\r
  87     scrollPane.setViewportView(treeCanvas);\r
  88 */\r
  89   }\r
  90 \r
  91   protected void distanceMenu_actionPerformed(ActionEvent e)\r
  92   {\r
  93     treeCanvas.setShowDistances(distanceMenu.getState());\r
  94   }\r
  95 \r
  96   protected void bootstrapMenu_actionPerformed(ActionEvent e)\r
  97   {\r
  98     treeCanvas.setShowBootstrap(bootstrapMenu.getState());\r
  99   }\r
 100 \r
 101 }\r