src/jalview/ext/treeviewer/LoadedTreeAssociationI.java

   1 package jalview.ext.treeviewer;
   2
   3 import jalview.datamodel.SequenceI;
   4
   5 import java.util.Map;
   6
   7 /**
   8  * Interface for associating the leaves of a loaded in (not calculated) tree to
   9  * the alignment sequences in Jalview.
  10  *
  11  * @author kjvanderheide
  12  *
  13  *
  14  */
  15 public interface LoadedTreeAssociationI
  16 {
  17   public void associateLeavesToSequences();
  18
  19   public Map<SequenceI, TreeNodeI> getAlignmentWithNodes();
  20
  21   public Map<TreeNodeI, SequenceI> getNodesWithAlignment();
  22 }