src/jalview/ext/treeviewer/TreeI.java

   1 package jalview.ext.treeviewer;
   2
   3 import jalview.datamodel.SequenceI;
   4
   5 import java.util.Iterator;
   6 import java.util.List;
   7
   8 public interface TreeI
   9 {
  10   public TreeNodeI getRoot();
  11
  12   public TreeNodeI getNodeWithName(String name);
  13
  14   public TreeNodeI getFurthestNode();
  15
  16   public TreeNodeI[] getAllNodes();
  17
  18   public String[] getAllLeafNames();
  19
  20   public List<SequenceI> getNodeSequences();
  21
  22   public void setTreeName(String treeTitle);
  23
  24   public void setRerootable(boolean b);
  25
  26   public void setRooted(boolean b);
  27
  28   public boolean isEmpty();
  29
  30   public String getTreeName();
  31
  32   public void setRoot(TreeNodeI rootNode);
  33
  34   public double getHeight(boolean adjustForCollapsedSubtrees);
  35
  36   public Iterator<TreeNodeI> iterateInPreOrder();
  37
  38   public Iterator<TreeNodeI> iterateInLevelOrder();
  39
  40   public Iterator<TreeNodeI> iterateInPostOrder();
  41
  42   TreeFrameI createTreeViewerFromTree(String instanceTitle);
  43
  44 }