src/jalview/ext/treeviewer/TreeI.java

   1 package jalview.ext.treeviewer;
   2
   3 import jalview.datamodel.SequenceI;
   4
   5 import java.util.Iterator;
   6
   7 public interface TreeI
   8 {
   9   public TreeNodeI getRoot();
  10
  11   public TreeNodeI getNodeWithName(String name);
  12
  13   public TreeNodeI getFurthestNode();
  14
  15   public TreeNodeI[] getAllNodes();
  16
  17   public String[] getAllLeafNames();
  18
  19   public SequenceI[] getNodeSequences();
  20
  21   public void setTreeName(String treeTitle);
  22
  23   public void setRerootable(boolean b);
  24
  25   public void setRooted(boolean b);
  26
  27   public boolean isEmpty();
  28
  29   public String getTreeName();
  30
  31   public void setRoot(TreeNodeI rootNode);
  32
  33   public double getHeight(boolean adjustForCollapsedSubtrees);
  34
  35   public Iterator<TreeNodeI> iterateInPreOrder();
  36
  37   public Iterator<TreeNodeI> iterateInLevelOrder();
  38
  39   public Iterator<TreeNodeI> iterateInPostOrder();
  40
  41   TreeFrameI createTreeViewerFromTree(String instanceTitle);
  42
  43 }