2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
23 import javax.swing.event.*;
25 import java.awt.event.*;
28 import jalview.api.SequenceStructureBinding;
29 import jalview.bin.Cache;
30 import jalview.datamodel.*;
31 import jalview.gui.ViewSelectionMenu.ViewSetProvider;
32 import jalview.structure.*;
34 import jalview.schemes.*;
36 public class AppVarna extends JInternalFrame // implements Runnable,SequenceStructureBinding, ViewSetProvider
45 //JSplitPane splitPane;
47 //RenderPanel renderPanel;
51 //Vector atomsPicked = new Vector();
54 vab = new AppVarnaBinding();
58 public AppVarna(String seq,String name){
59 vab = new AppVarnaBinding(seq);
64 public void initVarna(){
65 //vab.setFinishedInit(false);
67 this.getContentPane().add(varnaPanel);
68 jalview.gui.Desktop.addInternalFrame(this,name,getBounds().width, getBounds().height);
72 public void showPanel(boolean show){
73 //vab.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
75 //vab.setVisible(show);
76 varnaPanel.setVisible(show);
79 private boolean _started = false;
87 } catch (OutOfMemoryError oomerror)
89 new OOMWarning("When trying to open the Varna viewer!", oomerror);
90 } catch (Exception ex)
92 Cache.log.error("Couldn't open Varna viewer!", ex);