src/jalview/gui/ChimeraXViewFrame.java

   1 package jalview.gui;
   2
   3 import jalview.datamodel.PDBEntry;
   4 import jalview.datamodel.SequenceI;
   5 import jalview.gui.StructureViewer.ViewerType;
   6
   7 /**
   8  * A class for the gui frame through which Jalview interacts with the ChimeraX
   9  * structure viewer. Mostly the same as ChimeraViewFrame with a few overrides
  10  * for the differences.
  11  *
  12  * @author gmcarstairs
  13  *
  14  */
  15 public class ChimeraXViewFrame extends ChimeraViewFrame
  16 {
  17
  18   public ChimeraXViewFrame(PDBEntry pdb, SequenceI[] seqsForPdb,
  19           String[] chains, AlignmentPanel ap)
  20   {
  21     super(pdb, seqsForPdb, chains, ap);
  22   }
  23
  24   public ChimeraXViewFrame(PDBEntry[] pdbsForFile, boolean superposeAdded,
  25           SequenceI[][] theSeqs, AlignmentPanel ap)
  26   {
  27     super(pdbsForFile, superposeAdded, theSeqs, ap);
  28   }
  29
  30   @Override
  31   public ViewerType getViewerType()
  32   {
  33     return ViewerType.CHIMERAX;
  34   }
  35
  36   @Override
  37   protected String getViewerName()
  38   {
  39     return "ChimeraX";
  40   }
  41
  42   @Override
  43   protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap,
  44           PDBEntry[] pdbentrys, SequenceI[][] seqs)
  45   {
  46     return new JalviewChimeraXBindingModel(this,
  47             ap.getStructureSelectionManager(), pdbentrys, seqs, null);
  48   }
  49
  50   @Override
  51   protected void initMenus()
  52   {
  53     super.initMenus();
  54
  55     viewerActionMenu.setText("ChimeraX");
  56   }
  57
  58 }