src/jalview/gui/EBIFetchPanel.java

   1 package jalview.gui;
   2
   3 import jalview.jbgui.GEBIFetchPanel;
   4 import jalview.ws.dbsources.PDBRestClient;
   5 import jalview.ws.uimodel.PDBSearchOptionListModel;
   6 import jalview.ws.uimodel.PDBSearchResultPojo;
   7 import jalview.ws.uimodel.PDBSummaryListModel;
   8
   9 import javax.swing.DefaultListModel;
  10 import javax.swing.SwingUtilities;
  11
  12 @SuppressWarnings("serial")
  13 public class EBIFetchPanel extends GEBIFetchPanel
  14 {
  15   private SequenceFetcher seqFetcher;
  16
  17   public EBIFetchPanel()
  18   {
  19   }
  20
  21   public EBIFetchPanel(SequenceFetcher seqFetcher)
  22   {
  23     this();
  24     this.seqFetcher = seqFetcher;
  25   }
  26
  27   public static void main(String[] args)
  28   {
  29     SwingUtilities.invokeLater(new Runnable()
  30     {
  31       public void run()
  32       {
  33         new EBIFetchPanel();
  34       }
  35     });
  36   }
  37
  38   @Override
  39   public void searchStringAction()
  40   {
  41
  42     jListSearchResult.setModel(new DefaultListModel<PDBSummaryListModel>());
  43     mainFrame.setTitle("PDB Sequence Fetcher");
  44     if (search.getText().trim().length() > 0)
  45     {
  46       long startTime = System.currentTimeMillis();
  47
  48       PDBSearchResultPojo resultList = new PDBRestClient().searchResult(
  49               ((PDBSearchOptionListModel) searchFeild.getSelectedItem()).getCode(),
  50               search.getText());
  51       if (resultList.getSearchSummary() != null)
  52       {
  53         jListSearchResult.setModel(resultList.getSearchSummary());
  54       }
  55       long endTime = System.currentTimeMillis();
  56       mainFrame.setTitle("PDB Sequence Fetcher - "
  57               + resultList.getItemFound() + " results ("
  58               + (endTime - startTime) + " milli secs)");
  59     }
  60
  61   }
  62
  63   @Override
  64   public void okActionPerformed()
  65   {
  66     processPDBResponseData();
  67   }
  68
  69
  70   @Override
  71   public void backActionPerformed()
  72   {
  73     System.out.println("back! pressed!");
  74   }
  75
  76   @Override
  77   public void cancelActionPerformed()
  78   {
  79     mainFrame.dispose();
  80   }
  81
  82   private void processPDBResponseData()
  83   {
  84     mainFrame.dispose();
  85     StringBuilder selectedIds = new StringBuilder();
  86     for (PDBSummaryListModel dataSelected : jListSearchResult
  87             .getSelectedValuesList())
  88     {
  89       selectedIds.append(";").append(dataSelected.getPdbId());
  90     }
  91     String ids = selectedIds.deleteCharAt(0).toString();
  92     seqFetcher.textArea.setText(ids);
  93     Thread worker = new Thread(seqFetcher);
  94
  95     // Thread worker = new Thread(this);
  96     worker.start();
  97   }
  98
  99   // @Override
 100   // public void run()
 101   // {
 102   // for (PDBSummaryListModel sum : jListSearchResult
 103   // .getSelectedValuesList())
 104   // {
 105   // System.out.println("you selected ------------> " + sum.getPdbId());
 106   // }
 107   // seqFetcher.guiWindow.setProgressBar(MessageManager
 108   // .getString("status.processing"), Thread.currentThread()
 109   // .hashCode());
 110   // try
 111   // {
 112   // Thread.sleep(1000 * 2);
 113   // } catch (InterruptedException e)
 114   // {
 115   // e.printStackTrace();
 116   // }
 117   // seqFetcher.guiWindow.setProgressBar(null, Thread.currentThread()
 118   // .hashCode());
 119   // }
 120
 121 }