2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import jalview.util.MessageManager;
24 import jalview.util.Platform;
25 import jalview.viewmodel.OverviewDimensions;
26 import jalview.viewmodel.OverviewDimensionsHideHidden;
27 import jalview.viewmodel.OverviewDimensionsShowHidden;
28 import jalview.viewmodel.ViewportListenerI;
30 import java.awt.BorderLayout;
31 import java.awt.Cursor;
32 import java.awt.Dimension;
33 import java.awt.event.ActionEvent;
34 import java.awt.event.ActionListener;
35 import java.awt.event.ComponentAdapter;
36 import java.awt.event.ComponentEvent;
37 import java.awt.event.MouseAdapter;
38 import java.awt.event.MouseEvent;
39 import java.awt.event.MouseMotionAdapter;
40 import java.beans.PropertyChangeEvent;
42 import javax.swing.JCheckBoxMenuItem;
43 import javax.swing.JPanel;
44 import javax.swing.JPopupMenu;
45 import javax.swing.SwingUtilities;
48 * Panel displaying an overview of the full alignment, with an interactive box
49 * representing the viewport onto the alignment.
54 public class OverviewPanel extends JPanel implements Runnable,
57 private OverviewDimensions od;
59 private OverviewCanvas oviewCanvas;
61 private AlignViewport av;
63 private AlignmentPanel ap;
65 private JCheckBoxMenuItem displayToggle;
67 private boolean showHidden = true;
69 private boolean draggingBox = false;
72 * Creates a new OverviewPanel object.
75 * The alignment panel which is shown in the overview panel
77 public OverviewPanel(AlignmentPanel alPanel)
82 od = new OverviewDimensionsShowHidden(av.getRanges(),
83 (av.isShowAnnotation() && av
84 .getAlignmentConservationAnnotation() != null));
86 setSize(od.getWidth(), od.getHeight());
88 oviewCanvas = new OverviewCanvas(od, av);
89 setLayout(new BorderLayout());
90 add(oviewCanvas, BorderLayout.CENTER);
92 av.getRanges().addPropertyChangeListener(this);
94 addComponentListener(new ComponentAdapter()
97 public void componentResized(ComponentEvent evt)
99 if ((getWidth() != od.getWidth())
100 || (getHeight() != (od.getHeight())))
102 updateOverviewImage();
108 addMouseMotionListener(new MouseMotionAdapter()
111 public void mouseDragged(MouseEvent evt)
113 if (!SwingUtilities.isRightMouseButton(evt)
114 && !av.getWrapAlignment())
118 // set the mouse position as a fixed point in the box
119 // and drag relative to that position
120 od.adjustViewportFromMouse(evt.getX(),
121 evt.getY(), av.getAlignment().getHiddenSequences(),
122 av.getAlignment().getHiddenColumns());
126 od.updateViewportFromMouse(evt.getX(), evt.getY(), av
127 .getAlignment().getHiddenSequences(), av.getAlignment()
128 .getHiddenColumns());
135 public void mouseMoved(MouseEvent evt)
137 if (od.isPositionInBox(evt.getX(), evt.getY()))
139 // display drag cursor at mouse position
140 setCursor(Cursor.getPredefinedCursor(Cursor.MOVE_CURSOR));
145 setCursor(Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR));
150 addMouseListener(new MouseAdapter()
153 public void mousePressed(MouseEvent evt)
155 if (SwingUtilities.isRightMouseButton(evt))
157 if (!Platform.isAMac())
162 else if (!av.getWrapAlignment())
164 if (!od.isPositionInBox(evt.getX(), evt.getY()))
166 // don't do anything if the mouse press is in the overview's box
167 // (wait to see if it's a drag instead)
168 // otherwise update the viewport
169 od.updateViewportFromMouse(evt.getX(), evt.getY(),
170 av.getAlignment().getHiddenSequences(),
171 av.getAlignment().getHiddenColumns());
176 od.setDragPoint(evt.getX(), evt.getY(),
177 av.getAlignment().getHiddenSequences(),
178 av.getAlignment().getHiddenColumns());
184 public void mouseReleased(MouseEvent evt)
193 public void mouseClicked(MouseEvent evt)
195 if (SwingUtilities.isRightMouseButton(evt))
204 updateOverviewImage();
208 * Displays the popup menu and acts on user input
210 private void showPopupMenu(MouseEvent e)
212 JPopupMenu popup = new JPopupMenu();
213 ActionListener menuListener = new ActionListener()
216 public void actionPerformed(ActionEvent event)
218 // switch on/off the hidden columns view
219 toggleHiddenColumns();
220 displayToggle.setSelected(showHidden);
223 displayToggle = new JCheckBoxMenuItem(
224 MessageManager.getString("label.togglehidden"));
225 displayToggle.setEnabled(true);
226 displayToggle.setSelected(showHidden);
227 popup.add(displayToggle);
228 displayToggle.addActionListener(menuListener);
229 popup.show(this, e.getX(), e.getY());
233 * Toggle overview display between showing hidden columns and hiding hidden columns
235 private void toggleHiddenColumns()
240 od = new OverviewDimensionsHideHidden(av.getRanges(),
241 (av.isShowAnnotation() && av
242 .getAlignmentConservationAnnotation() != null));
247 od = new OverviewDimensionsShowHidden(av.getRanges(),
248 (av.isShowAnnotation() && av
249 .getAlignmentConservationAnnotation() != null));
251 oviewCanvas.resetOviewDims(od);
252 updateOverviewImage();
257 * Updates the overview image when the related alignment panel is updated
259 public void updateOverviewImage()
261 if ((getWidth() > 0) && (getHeight() > 0))
263 od.setWidth(getWidth());
264 od.setHeight(getHeight());
267 setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
269 if (oviewCanvas.restartDraw())
274 Thread thread = new Thread(this);
283 oviewCanvas.draw(av.isShowSequenceFeatures(),
284 (av.isShowAnnotation() && av
285 .getAlignmentConservationAnnotation() != null), ap
286 .getSeqPanel().seqCanvas.getFeatureRenderer());
291 * Update the overview panel box when the associated alignment panel is
295 private void setBoxPosition()
297 od.setBoxPosition(av.getAlignment().getHiddenSequences(), av
298 .getAlignment().getHiddenColumns());
303 public void propertyChange(PropertyChangeEvent evt)