src/jalview/io/AlignmentFileReaderI.java

   1 package jalview.io;
   2
   3 import jalview.api.AlignExportSettingI;
   4 import jalview.api.AlignmentViewPanel;
   5 import jalview.api.FeatureSettingsModelI;
   6 import jalview.datamodel.AlignmentI;
   7 import jalview.datamodel.SequenceI;
   8
   9 public interface AlignmentFileReaderI
  10 {
  11
  12   SequenceI[] getSeqsAsArray();
  13
  14   void addAnnotations(AlignmentI al);
  15
  16   void addGroups(AlignmentI al);
  17
  18   void setSeqs(SequenceI[] sequencesArray);
  19
  20   boolean hasWarningMessage();
  21
  22   String getWarningMessage();
  23
  24   String getInFile();
  25
  26   DataSourceType getDataSourceType();
  27
  28   FeatureSettingsModelI getFeatureColourScheme();
  29
  30 }