2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.bin.Jalview;
25 import jalview.io.FileFormatException;
26 import jalview.util.MessageManager;
27 import jalview.util.Platform;
29 import java.awt.FlowLayout;
30 import java.awt.Toolkit;
31 import java.awt.event.ActionEvent;
32 import java.awt.event.ActionListener;
34 import javax.swing.JCheckBoxMenuItem;
35 import javax.swing.JFrame;
36 import javax.swing.JMenu;
37 import javax.swing.JMenuBar;
38 import javax.swing.JMenuItem;
46 public class GDesktop extends JFrame
48 protected static JMenu windowMenu = new JMenu();
50 JMenuBar desktopMenubar = new JMenuBar();
52 JMenu FileMenu = new JMenu();
54 JMenu HelpMenu = new JMenu();
56 protected JMenu VamsasMenu = new JMenu();
58 protected JMenu VamsasStMenu = new JMenu();
60 JMenuItem inputLocalFileMenuItem = new JMenuItem();
62 JMenuItem inputURLMenuItem = new JMenuItem();
64 JMenuItem inputTextboxMenuItem = new JMenuItem();
66 JMenuItem quit = new JMenuItem();
68 JMenuItem aboutMenuItem = new JMenuItem();
70 JMenuItem documentationMenuItem = new JMenuItem();
72 FlowLayout flowLayout1 = new FlowLayout();
74 protected JMenu toolsMenu = new JMenu();
76 JMenuItem preferences = new JMenuItem();
78 JMenuItem saveState = new JMenuItem();
80 JMenuItem loadState = new JMenuItem();
82 JMenu inputMenu = new JMenu();
84 protected JMenuItem vamsasStart = new JMenuItem();
86 protected JMenuItem vamsasImport = new JMenuItem();
88 protected JMenuItem vamsasSave = new JMenuItem();
90 JMenuItem inputSequence = new JMenuItem();
92 protected JMenuItem vamsasStop = new JMenuItem();
94 JMenuItem closeAll = new JMenuItem();
96 JMenuItem raiseRelated = new JMenuItem();
98 JMenuItem minimizeAssociated = new JMenuItem();
100 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
102 JMenuItem garbageCollect = new JMenuItem();
104 protected JMenuItem groovyShell;
106 protected JCheckBoxMenuItem experimentalFeatures;
108 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
110 protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
112 protected JMenuItem snapShotWindow = new JMenuItem();
115 * Creates a new GDesktop object.
123 this.setJMenuBar(desktopMenubar);
124 } catch (Exception e)
129 if (!Platform.isAMac())
131 FileMenu.setMnemonic('F');
132 inputLocalFileMenuItem.setMnemonic('L');
133 VamsasMenu.setMnemonic('V');
134 inputURLMenuItem.setMnemonic('U');
135 inputTextboxMenuItem.setMnemonic('C');
136 quit.setMnemonic('Q');
137 saveState.setMnemonic('S');
138 loadState.setMnemonic('L');
139 inputMenu.setMnemonic('I');
149 private void jbInit() throws Exception
152 FileMenu.setText(MessageManager.getString("action.file"));
153 HelpMenu.setText(MessageManager.getString("action.help"));
154 VamsasMenu.setText("Vamsas");
155 VamsasMenu.setToolTipText(MessageManager
156 .getString("label.share_data_vamsas_applications"));
157 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
158 VamsasStMenu.setToolTipText(
159 MessageManager.getString("label.join_existing_vamsas_session"));
160 inputLocalFileMenuItem
161 .setText(MessageManager.getString("label.load_tree_from_file"));
162 inputLocalFileMenuItem.setAccelerator(
163 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
164 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
166 inputLocalFileMenuItem
167 .addActionListener(new java.awt.event.ActionListener()
170 public void actionPerformed(ActionEvent e)
172 inputLocalFileMenuItem_actionPerformed(null);
175 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
176 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
179 public void actionPerformed(ActionEvent e)
183 inputURLMenuItem_actionPerformed(null);
184 } catch (FileFormatException e1)
186 System.err.println("Error loading from URL: " + e1.getMessage());
191 .setText(MessageManager.getString("label.from_textbox"));
193 .addActionListener(new java.awt.event.ActionListener()
196 public void actionPerformed(ActionEvent e)
198 inputTextboxMenuItem_actionPerformed(null);
201 quit.setText(MessageManager.getString("action.quit"));
202 quit.addActionListener(new java.awt.event.ActionListener()
205 public void actionPerformed(ActionEvent e)
210 aboutMenuItem.setText(MessageManager.getString("label.about"));
211 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
214 public void actionPerformed(ActionEvent e)
216 aboutMenuItem_actionPerformed(e);
219 documentationMenuItem
220 .setText(MessageManager.getString("label.documentation"));
221 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
222 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
223 documentationMenuItem
224 .addActionListener(new java.awt.event.ActionListener()
227 public void actionPerformed(ActionEvent e)
229 documentationMenuItem_actionPerformed();
232 this.getContentPane().setLayout(flowLayout1);
233 windowMenu.setText(MessageManager.getString("label.window"));
234 preferences.setText(MessageManager.getString("label.preferences"));
235 preferences.addActionListener(new ActionListener()
238 public void actionPerformed(ActionEvent e)
240 preferences_actionPerformed(e);
243 toolsMenu.setText(MessageManager.getString("label.tools"));
244 saveState.setText(MessageManager.getString("action.save_project"));
245 saveState.addActionListener(new ActionListener()
248 public void actionPerformed(ActionEvent e)
250 saveState_actionPerformed();
253 loadState.setText(MessageManager.getString("action.load_project"));
254 loadState.addActionListener(new ActionListener()
257 public void actionPerformed(ActionEvent e)
259 loadState_actionPerformed();
262 inputMenu.setText(MessageManager.getString("label.input_alignment"));
264 .setText(MessageManager.getString("label.new_vamsas_session"));
265 vamsasStart.setVisible(false);
266 vamsasStart.addActionListener(new ActionListener()
269 public void actionPerformed(ActionEvent e)
271 vamsasStart_actionPerformed(e);
274 vamsasImport.setText(
275 MessageManager.getString("action.load_vamsas_session"));
276 vamsasImport.setVisible(false);
277 vamsasImport.addActionListener(new ActionListener()
280 public void actionPerformed(ActionEvent e)
282 vamsasImport_actionPerformed(e);
286 MessageManager.getString("action.save_vamsas_session"));
287 vamsasSave.setVisible(false);
288 vamsasSave.addActionListener(new ActionListener()
291 public void actionPerformed(ActionEvent e)
293 vamsasSave_actionPerformed(e);
297 .setText(MessageManager.getString("action.fetch_sequences"));
298 inputSequence.addActionListener(new ActionListener()
301 public void actionPerformed(ActionEvent e)
303 inputSequence_actionPerformed(e);
307 .setText(MessageManager.getString("label.stop_vamsas_session"));
308 vamsasStop.setVisible(false);
309 vamsasStop.addActionListener(new ActionListener()
312 public void actionPerformed(ActionEvent e)
314 vamsasStop_actionPerformed(e);
317 closeAll.setText(MessageManager.getString("action.close_all"));
318 closeAll.addActionListener(new ActionListener()
321 public void actionPerformed(ActionEvent e)
323 closeAll_actionPerformed(e);
326 raiseRelated.setText(
327 MessageManager.getString("action.raise_associated_windows"));
328 raiseRelated.addActionListener(new ActionListener()
331 public void actionPerformed(ActionEvent e)
333 raiseRelated_actionPerformed(e);
336 minimizeAssociated.setText(
337 MessageManager.getString("action.minimize_associated_windows"));
338 minimizeAssociated.addActionListener(new ActionListener()
341 public void actionPerformed(ActionEvent e)
343 minimizeAssociated_actionPerformed(e);
347 .setText(MessageManager.getString("label.collect_garbage"));
348 garbageCollect.addActionListener(new ActionListener()
351 public void actionPerformed(ActionEvent e)
353 garbageCollect_actionPerformed(e);
357 .setText(MessageManager.getString("label.show_memory_usage"));
358 showMemusage.addActionListener(new ActionListener()
361 public void actionPerformed(ActionEvent e)
363 showMemusage_actionPerformed(e);
367 .setText(MessageManager.getString("label.show_java_console"));
368 showConsole.addActionListener(new ActionListener()
371 public void actionPerformed(ActionEvent e)
373 showConsole_actionPerformed(e);
376 showNews.setText(MessageManager.getString("label.show_jalview_news"));
377 showNews.addActionListener(new ActionListener()
380 public void actionPerformed(ActionEvent e)
382 showNews_actionPerformed(e);
385 groovyShell = new JMenuItem();
386 groovyShell.setText(MessageManager.getString("label.groovy_console"));
387 groovyShell.addActionListener(new ActionListener()
390 public void actionPerformed(ActionEvent e)
392 groovyShell_actionPerformed();
395 experimentalFeatures = new JCheckBoxMenuItem();
397 .setText(MessageManager.getString("label.show_experimental"));
398 experimentalFeatures.setToolTipText(
399 MessageManager.getString("label.show_experimental_tip"));
400 experimentalFeatures.addActionListener(new ActionListener()
403 public void actionPerformed(ActionEvent e)
405 showExperimental_actionPerformed(experimentalFeatures.isSelected());
409 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
410 snapShotWindow.addActionListener(new ActionListener()
413 public void actionPerformed(ActionEvent e)
415 snapShotWindow_actionPerformed(e);
419 desktopMenubar.add(FileMenu);
420 desktopMenubar.add(toolsMenu);
421 VamsasMenu.setVisible(false);
422 desktopMenubar.add(VamsasMenu);
423 desktopMenubar.add(HelpMenu);
424 desktopMenubar.add(windowMenu);
425 FileMenu.add(inputMenu);
426 FileMenu.add(inputSequence);
429 FileMenu.addSeparator();
430 FileMenu.add(saveState);
431 FileMenu.add(loadState);
433 FileMenu.addSeparator();
435 HelpMenu.add(aboutMenuItem);
436 HelpMenu.add(documentationMenuItem);
437 VamsasMenu.add(VamsasStMenu);
438 VamsasStMenu.setVisible(false);
439 VamsasMenu.add(vamsasStart);
440 VamsasMenu.add(vamsasImport);
441 VamsasMenu.add(vamsasSave);
442 VamsasMenu.add(vamsasStop);
443 toolsMenu.add(preferences);
446 toolsMenu.add(showMemusage);
447 toolsMenu.add(showConsole);
451 toolsMenu.add(showNews);
452 toolsMenu.add(garbageCollect);
453 toolsMenu.add(groovyShell);
455 toolsMenu.add(experimentalFeatures);
456 // toolsMenu.add(snapShotWindow);
457 inputMenu.add(inputLocalFileMenuItem);
458 inputMenu.add(inputURLMenuItem);
459 inputMenu.add(inputTextboxMenuItem);
460 windowMenu.add(closeAll);
461 windowMenu.add(raiseRelated);
462 windowMenu.add(minimizeAssociated);
463 windowMenu.addSeparator();
464 // inputMenu.add(vamsasLoad);
467 protected void showExperimental_actionPerformed(boolean selected)
471 protected void groovyShell_actionPerformed()
475 protected void snapShotWindow_actionPerformed(ActionEvent e)
477 // TODO Auto-generated method stub
481 protected void showConsole_actionPerformed(ActionEvent e)
483 // TODO Auto-generated method stub
487 protected void showNews_actionPerformed(ActionEvent e)
489 // TODO Auto-generated method stub
493 protected void showMemusage_actionPerformed(ActionEvent e)
495 // TODO Auto-generated method stub
499 protected void garbageCollect_actionPerformed(ActionEvent e)
501 // TODO Auto-generated method stub
505 protected void vamsasStMenu_actionPerformed()
509 public void vamsasSave_actionPerformed(ActionEvent e)
519 protected void inputLocalFileMenuItem_actionPerformed(
520 jalview.gui.AlignViewport av)
529 * @throws FileFormatException
531 protected void inputURLMenuItem_actionPerformed(
532 jalview.gui.AlignViewport av) throws FileFormatException
542 protected void inputTextboxMenuItem_actionPerformed(
543 AlignmentViewPanel avp)
550 protected void quit()
560 protected void aboutMenuItem_actionPerformed(ActionEvent e)
564 protected void documentationMenuItem_actionPerformed()
574 public void SaveState_actionPerformed(ActionEvent e)
584 protected void preferences_actionPerformed(ActionEvent e)
588 public void saveState_actionPerformed()
592 public void loadState_actionPerformed()
596 public void vamsasStart_actionPerformed(ActionEvent e)
601 public void inputSequence_actionPerformed(ActionEvent e)
606 public void vamsasStop_actionPerformed(ActionEvent e)
611 public void closeAll_actionPerformed(ActionEvent e)
616 public void raiseRelated_actionPerformed(ActionEvent e)
621 public void minimizeAssociated_actionPerformed(ActionEvent e)
626 public void vamsasImport_actionPerformed(ActionEvent e)