src/jalview/jbgui/GFinder.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.datamodel.AlignmentI;
  24 import jalview.io.DataSourceType;
  25 import jalview.io.FileFormat;
  26 import jalview.io.FormatAdapter;
  27 import jalview.io.cache.JvCacheableInputBox;
  28 import jalview.util.MessageManager;
  29
  30 import java.awt.BorderLayout;
  31 import java.awt.Font;
  32 import java.awt.GridLayout;
  33 import java.awt.event.ActionEvent;
  34 import java.awt.event.ActionListener;
  35 import java.awt.event.KeyAdapter;
  36 import java.awt.event.KeyEvent;
  37
  38 import javax.swing.JButton;
  39 import javax.swing.JCheckBox;
  40 import javax.swing.JLabel;
  41 import javax.swing.JPanel;
  42 import javax.swing.SwingConstants;
  43 import javax.swing.SwingUtilities;
  44 import javax.swing.event.CaretEvent;
  45 import javax.swing.event.CaretListener;
  46
  47 public class GFinder extends JPanel
  48 {
  49   private static final java.awt.Font VERDANA_12 = new Font("Verdana",
  50           Font.PLAIN, 12);
  51
  52   private static final String FINDER_CACHE_KEY = "CACHE.FINDER";
  53
  54   /*
  55    * if more checkboxes are wanted, increase this value
  56    * and add to centrePanel in jbInit()
  57    */
  58   private static final int PANEL_ROWS = 4;
  59
  60   protected JButton createFeatures;
  61
  62   protected JvCacheableInputBox<String> searchBox;
  63
  64   protected JCheckBox caseSensitive;
  65
  66   protected JCheckBox searchDescription;
  67
  68   protected JCheckBox ignoreHidden;
  69
  70   public GFinder()
  71   {
  72     try
  73     {
  74       jbInit();
  75     } catch (Exception e)
  76     {
  77       e.printStackTrace();
  78     }
  79   }
  80
  81   /**
  82    * Constructs the widgets and adds them to the layout
  83    */
  84   private void jbInit() throws Exception
  85   {
  86     /*
  87      * border layout
  88      * West: 4 rows
  89      *   first row 'Find'
  90      *   remaining rows empty
  91      * Center: 4 rows
  92      *   first row search box
  93      *   second row 'match case' checkbox
  94      *   third row 'include description' checkbox
  95      *   fourth row 'ignore hidden' checkbox
  96      * East: four rows
  97      *   first row 'find next' button
  98      *   second row 'find all' button
  99      *   third row 'new feature' button
 100      *   fourth row empty
 101      */
 102     this.setLayout(new BorderLayout());
 103     JPanel eastPanel = new JPanel();
 104     eastPanel.setLayout(new GridLayout(PANEL_ROWS, 1));
 105     this.add(eastPanel, BorderLayout.EAST);
 106     JPanel centrePanel = new JPanel();
 107     centrePanel.setLayout(new GridLayout(PANEL_ROWS, 1));
 108     this.add(centrePanel, BorderLayout.CENTER);
 109     JPanel westPanel = new JPanel();
 110     westPanel.setLayout(new GridLayout(PANEL_ROWS, 1));
 111     this.add(westPanel, BorderLayout.WEST);
 112
 113     /*
 114      * 'Find' prompt goes top left
 115      */
 116     JLabel findLabel = new JLabel(
 117             " " + MessageManager.getString("label.find") + " ");
 118     findLabel.setFont(VERDANA_12);
 119     westPanel.add(findLabel);
 120
 121     /*
 122      * search box
 123      */
 124     searchBox = new JvCacheableInputBox<>(FINDER_CACHE_KEY, 25);
 125     searchBox.getComponent().setFont(VERDANA_12);
 126     searchBox.addCaretListener(new CaretListener()
 127             {
 128               @Override
 129               public void caretUpdate(CaretEvent e)
 130               {
 131                 textfield_caretUpdate();
 132               }
 133             });
 134     searchBox.addKeyListener(new KeyAdapter()
 135             {
 136               @Override
 137               public void keyPressed(KeyEvent e)
 138               {
 139                 textfield_keyPressed(e);
 140               }
 141             });
 142     centrePanel.add(searchBox.getComponent());
 143
 144     /*
 145      * search options checkboxes
 146      */
 147     caseSensitive = new JCheckBox();
 148     caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
 149     caseSensitive.setText(MessageManager.getString("label.match_case"));
 150
 151     searchDescription = new JCheckBox();
 152     searchDescription
 153             .setText(MessageManager.getString("label.include_description"));
 154
 155     ignoreHidden = new JCheckBox();
 156     ignoreHidden.setText(MessageManager.getString("label.ignore_hidden"));
 157     ignoreHidden.setToolTipText(
 158             MessageManager.getString("label.ignore_hidden_tooltip"));
 159
 160     centrePanel.add(caseSensitive);
 161     centrePanel.add(searchDescription);
 162     centrePanel.add(ignoreHidden);
 163
 164     /*
 165      * action buttons
 166      */
 167     JButton findAll = new JButton(
 168             MessageManager.getString("action.find_all"));
 169     findAll.setFont(VERDANA_12);
 170     findAll.addActionListener(new ActionListener()
 171     {
 172       @Override
 173       public void actionPerformed(ActionEvent e)
 174       {
 175         findAll_actionPerformed();
 176       }
 177     });
 178     JButton findNext = new JButton(
 179             MessageManager.getString("action.find_next"));
 180     findNext.setFont(VERDANA_12);
 181     findNext.addActionListener(new ActionListener()
 182     {
 183       @Override
 184       public void actionPerformed(ActionEvent e)
 185       {
 186         findNext_actionPerformed();
 187       }
 188     });
 189     createFeatures = new JButton();
 190     createFeatures.setEnabled(false);
 191     createFeatures.setFont(VERDANA_12);
 192     createFeatures.setText(MessageManager.getString("label.new_feature"));
 193     createFeatures.addActionListener(new ActionListener()
 194     {
 195       @Override
 196       public void actionPerformed(ActionEvent e)
 197       {
 198         createFeatures_actionPerformed();
 199       }
 200     });
 201     eastPanel.add(findNext);
 202     eastPanel.add(findAll);
 203     eastPanel.add(createFeatures);
 204   }
 205
 206   protected void textfield_keyPressed(KeyEvent e)
 207   {
 208     if (e.getKeyCode() == KeyEvent.VK_ENTER)
 209     {
 210       if (!searchBox.isPopupVisible())
 211       {
 212         e.consume();
 213         findNext_actionPerformed();
 214       }
 215     }
 216   }
 217
 218   protected void findNext_actionPerformed()
 219   {
 220   }
 221
 222   protected void findAll_actionPerformed()
 223   {
 224   }
 225
 226   public void createFeatures_actionPerformed()
 227   {
 228   }
 229
 230   public void textfield_caretUpdate()
 231   {
 232     // disabled as appears to be running a non-functional
 233     if (false && searchBox.getUserInput().indexOf(">") > -1)
 234     {
 235       SwingUtilities.invokeLater(new Runnable()
 236       {
 237         @Override
 238         public void run()
 239         {
 240           String str = searchBox.getUserInput();
 241           AlignmentI al = null;
 242           try
 243           {
 244             al = new FormatAdapter().readFile(str, DataSourceType.PASTE,
 245                     FileFormat.Fasta);
 246           } catch (Exception ex)
 247           {
 248           }
 249           if (al != null && al.getHeight() > 0)
 250           {
 251             str = jalview.analysis.AlignSeq.extractGaps(
 252                     jalview.util.Comparison.GapChars,
 253                     al.getSequenceAt(0).getSequenceAsString());
 254             // todo and what? set str as searchBox text?
 255           }
 256         }
 257       });
 258     }
 259   }
 260
 261 }