src/jalview/jbgui/GPCAPanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.MessageManager;
  24
  25 import java.awt.BorderLayout;
  26 import java.awt.Color;
  27 import java.awt.FlowLayout;
  28 import java.awt.Font;
  29 import java.awt.GridLayout;
  30 import java.awt.event.ActionEvent;
  31 import java.awt.event.ActionListener;
  32
  33 import javax.swing.JButton;
  34 import javax.swing.JCheckBoxMenuItem;
  35 import javax.swing.JComboBox;
  36 import javax.swing.JInternalFrame;
  37 import javax.swing.JLabel;
  38 import javax.swing.JMenu;
  39 import javax.swing.JMenuBar;
  40 import javax.swing.JMenuItem;
  41 import javax.swing.JPanel;
  42 import javax.swing.event.MenuEvent;
  43 import javax.swing.event.MenuListener;
  44
  45 public class GPCAPanel extends JInternalFrame
  46 {
  47   private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
  48
  49   protected JComboBox<String> xCombobox = new JComboBox<String>();
  50
  51   protected JComboBox<String> yCombobox = new JComboBox<String>();
  52
  53   protected JComboBox<String> zCombobox = new JComboBox<String>();
  54
  55   protected JMenu scoreModelMenu = new JMenu();
  56
  57   protected JMenu viewMenu = new JMenu();
  58
  59   protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
  60
  61   protected JMenu associateViewsMenu = new JMenu();
  62
  63   protected JMenu calcSettings = new JMenu();
  64
  65   protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
  66
  67   protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
  68
  69   protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
  70
  71   protected JLabel statusBar = new JLabel();
  72
  73   protected JPanel statusPanel = new JPanel();
  74
  75   public GPCAPanel()
  76   {
  77     try
  78     {
  79       jbInit();
  80     } catch (Exception e)
  81     {
  82       e.printStackTrace();
  83     }
  84
  85     for (int i = 1; i < 8; i++)
  86     {
  87       xCombobox.addItem("dim " + i);
  88       yCombobox.addItem("dim " + i);
  89       zCombobox.addItem("dim " + i);
  90     }
  91   }
  92
  93   private void jbInit() throws Exception
  94   {
  95     this.getContentPane().setLayout(new BorderLayout());
  96     JPanel jPanel2 = new JPanel();
  97     jPanel2.setLayout(new FlowLayout());
  98     JLabel jLabel1 = new JLabel();
  99     jLabel1.setFont(VERDANA_12);
 100     jLabel1.setText("x=");
 101     JLabel jLabel2 = new JLabel();
 102     jLabel2.setFont(VERDANA_12);
 103     jLabel2.setText("y=");
 104     JLabel jLabel3 = new JLabel();
 105     jLabel3.setFont(VERDANA_12);
 106     jLabel3.setText("z=");
 107     jPanel2.setBackground(Color.white);
 108     jPanel2.setBorder(null);
 109     zCombobox.setFont(VERDANA_12);
 110     zCombobox.addActionListener(new ActionListener()
 111     {
 112       @Override
 113       public void actionPerformed(ActionEvent e)
 114       {
 115         zCombobox_actionPerformed(e);
 116       }
 117     });
 118     yCombobox.setFont(VERDANA_12);
 119     yCombobox.addActionListener(new ActionListener()
 120     {
 121       @Override
 122       public void actionPerformed(ActionEvent e)
 123       {
 124         yCombobox_actionPerformed(e);
 125       }
 126     });
 127     xCombobox.setFont(VERDANA_12);
 128     xCombobox.addActionListener(new ActionListener()
 129     {
 130       @Override
 131       public void actionPerformed(ActionEvent e)
 132       {
 133         xCombobox_actionPerformed(e);
 134       }
 135     });
 136     JButton resetButton = new JButton();
 137     resetButton.setFont(VERDANA_12);
 138     resetButton.setText(MessageManager.getString("action.reset"));
 139     resetButton.addActionListener(new ActionListener()
 140     {
 141       @Override
 142       public void actionPerformed(ActionEvent e)
 143       {
 144         resetButton_actionPerformed(e);
 145       }
 146     });
 147     JMenu fileMenu = new JMenu();
 148     fileMenu.setText(MessageManager.getString("action.file"));
 149     JMenu saveMenu = new JMenu();
 150     saveMenu.setText(MessageManager.getString("action.save_as"));
 151     JMenuItem eps = new JMenuItem("EPS");
 152     eps.addActionListener(new ActionListener()
 153     {
 154       @Override
 155       public void actionPerformed(ActionEvent e)
 156       {
 157         eps_actionPerformed(e);
 158       }
 159     });
 160     JMenuItem png = new JMenuItem("PNG");
 161     png.addActionListener(new ActionListener()
 162     {
 163       @Override
 164       public void actionPerformed(ActionEvent e)
 165       {
 166         png_actionPerformed(e);
 167       }
 168     });
 169     JMenuItem outputValues = new JMenuItem();
 170     outputValues.setText(MessageManager.getString("label.output_values"));
 171     outputValues.addActionListener(new ActionListener()
 172     {
 173       @Override
 174       public void actionPerformed(ActionEvent e)
 175       {
 176         outputValues_actionPerformed(e);
 177       }
 178     });
 179     JMenuItem outputPoints = new JMenuItem();
 180     outputPoints.setText(MessageManager.getString("label.output_points"));
 181     outputPoints.addActionListener(new ActionListener()
 182     {
 183       @Override
 184       public void actionPerformed(ActionEvent e)
 185       {
 186         outputPoints_actionPerformed(e);
 187       }
 188     });
 189     JMenuItem outputProjPoints = new JMenuItem();
 190     outputProjPoints.setText(MessageManager
 191             .getString("label.output_transformed_points"));
 192     outputProjPoints.addActionListener(new ActionListener()
 193     {
 194       @Override
 195       public void actionPerformed(ActionEvent e)
 196       {
 197         outputProjPoints_actionPerformed(e);
 198       }
 199     });
 200     JMenuItem print = new JMenuItem();
 201     print.setText(MessageManager.getString("action.print"));
 202     print.addActionListener(new ActionListener()
 203     {
 204       @Override
 205       public void actionPerformed(ActionEvent e)
 206       {
 207         print_actionPerformed(e);
 208       }
 209     });
 210     viewMenu.setText(MessageManager.getString("action.view"));
 211     viewMenu.addMenuListener(new MenuListener()
 212     {
 213       @Override
 214       public void menuSelected(MenuEvent e)
 215       {
 216         viewMenu_menuSelected();
 217       }
 218
 219       @Override
 220       public void menuDeselected(MenuEvent e)
 221       {
 222       }
 223
 224       @Override
 225       public void menuCanceled(MenuEvent e)
 226       {
 227       }
 228     });
 229     scoreModelMenu.setText(MessageManager
 230             .getString("label.select_score_model"));
 231     scoreModelMenu.addMenuListener(new MenuListener()
 232     {
 233       @Override
 234       public void menuSelected(MenuEvent e)
 235       {
 236         scoreModel_menuSelected();
 237       }
 238
 239       @Override
 240       public void menuDeselected(MenuEvent e)
 241       {
 242       }
 243
 244       @Override
 245       public void menuCanceled(MenuEvent e)
 246       {
 247       }
 248     });
 249     showLabels.setText(MessageManager.getString("label.show_labels"));
 250     showLabels.addActionListener(new ActionListener()
 251     {
 252       @Override
 253       public void actionPerformed(ActionEvent e)
 254       {
 255         showLabels_actionPerformed(e);
 256       }
 257     });
 258     JMenuItem bgcolour = new JMenuItem();
 259     bgcolour.setText(MessageManager.getString("action.background_colour"));
 260     bgcolour.addActionListener(new ActionListener()
 261     {
 262       @Override
 263       public void actionPerformed(ActionEvent e)
 264       {
 265         bgcolour_actionPerformed(e);
 266       }
 267     });
 268     JMenuItem originalSeqData = new JMenuItem();
 269     originalSeqData.setText(MessageManager.getString("label.input_data"));
 270     originalSeqData.addActionListener(new ActionListener()
 271     {
 272       @Override
 273       public void actionPerformed(ActionEvent e)
 274       {
 275         originalSeqData_actionPerformed(e);
 276       }
 277     });
 278     associateViewsMenu.setText(MessageManager
 279             .getString("label.associate_nodes_with"));
 280     calcSettings.setText(MessageManager.getString("action.change_params"));
 281     nuclSetting
 282             .setText(MessageManager.getString("label.nucleotide_matrix"));
 283     protSetting.setText(MessageManager.getString("label.protein_matrix"));
 284     nuclSetting.addActionListener(new ActionListener()
 285     {
 286
 287       @Override
 288       public void actionPerformed(ActionEvent arg0)
 289       {
 290         nuclSetting_actionPerfomed(arg0);
 291       }
 292     });
 293     protSetting.addActionListener(new ActionListener()
 294     {
 295
 296       @Override
 297       public void actionPerformed(ActionEvent arg0)
 298       {
 299         protSetting_actionPerfomed(arg0);
 300       }
 301     });
 302     jvVersionSetting.setText(MessageManager
 303             .getString("label.jalview_pca_calculation"));
 304     jvVersionSetting.addActionListener(new ActionListener()
 305     {
 306       @Override
 307       public void actionPerformed(ActionEvent arg0)
 308       {
 309         jvVersionSetting_actionPerfomed(arg0);
 310       }
 311     });
 312     // calcSettings.add(jvVersionSetting); // todo remove? JAL-2416
 313     calcSettings.add(nuclSetting);
 314     calcSettings.add(protSetting);
 315     calcSettings.add(scoreModelMenu);
 316     statusPanel.setLayout(new GridLayout());
 317     statusBar.setFont(VERDANA_12);
 318     // statusPanel.setBackground(Color.lightGray);
 319     // statusBar.setBackground(Color.lightGray);
 320     // statusPanel.add(statusBar, null);
 321     JPanel panelBar = new JPanel(new BorderLayout());
 322     panelBar.add(jPanel2, BorderLayout.NORTH);
 323     panelBar.add(statusPanel, BorderLayout.SOUTH);
 324     this.getContentPane().add(panelBar, BorderLayout.SOUTH);
 325     jPanel2.add(jLabel1, null);
 326     jPanel2.add(xCombobox, null);
 327     jPanel2.add(jLabel2, null);
 328     jPanel2.add(yCombobox, null);
 329     jPanel2.add(jLabel3, null);
 330     jPanel2.add(zCombobox, null);
 331     jPanel2.add(resetButton, null);
 332
 333     JMenuBar jMenuBar1 = new JMenuBar();
 334     jMenuBar1.add(fileMenu);
 335     jMenuBar1.add(viewMenu);
 336     jMenuBar1.add(calcSettings);
 337     setJMenuBar(jMenuBar1);
 338     fileMenu.add(saveMenu);
 339     fileMenu.add(outputValues);
 340     fileMenu.add(print);
 341     fileMenu.add(originalSeqData);
 342     fileMenu.add(outputPoints);
 343     fileMenu.add(outputProjPoints);
 344     saveMenu.add(eps);
 345     saveMenu.add(png);
 346     viewMenu.add(showLabels);
 347     viewMenu.add(bgcolour);
 348     viewMenu.add(associateViewsMenu);
 349   }
 350
 351   protected void scoreModel_menuSelected()
 352   {
 353     // TODO Auto-generated method stub
 354
 355   }
 356
 357   protected void resetButton_actionPerformed(ActionEvent e)
 358   {
 359     // TODO Auto-generated method stub
 360
 361   }
 362
 363   protected void protSetting_actionPerfomed(ActionEvent arg0)
 364   {
 365     // TODO Auto-generated method stub
 366
 367   }
 368
 369   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
 370   {
 371     // TODO Auto-generated method stub
 372
 373   }
 374
 375   protected void outputPoints_actionPerformed(ActionEvent e)
 376   {
 377     // TODO Auto-generated method stub
 378
 379   }
 380
 381   protected void outputProjPoints_actionPerformed(ActionEvent e)
 382   {
 383     // TODO Auto-generated method stub
 384
 385   }
 386
 387   protected void xCombobox_actionPerformed(ActionEvent e)
 388   {
 389   }
 390
 391   protected void yCombobox_actionPerformed(ActionEvent e)
 392   {
 393   }
 394
 395   protected void zCombobox_actionPerformed(ActionEvent e)
 396   {
 397   }
 398
 399   public void eps_actionPerformed(ActionEvent e)
 400   {
 401
 402   }
 403
 404   public void png_actionPerformed(ActionEvent e)
 405   {
 406
 407   }
 408
 409   public void outputValues_actionPerformed(ActionEvent e)
 410   {
 411
 412   }
 413
 414   public void print_actionPerformed(ActionEvent e)
 415   {
 416
 417   }
 418
 419   public void showLabels_actionPerformed(ActionEvent e)
 420   {
 421
 422   }
 423
 424   public void bgcolour_actionPerformed(ActionEvent e)
 425   {
 426
 427   }
 428
 429   public void originalSeqData_actionPerformed(ActionEvent e)
 430   {
 431
 432   }
 433
 434   public void viewMenu_menuSelected()
 435   {
 436
 437   }
 438
 439   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
 440   {
 441     // TODO Auto-generated method stub
 442
 443   }
 444 }