src/jalview/jbgui/GPCAPanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  * The Jalview Authors are detailed in the 'AUTHORS' file.
  18  */
  19 package jalview.jbgui;
  20
  21 import jalview.util.MessageManager;
  22
  23 import java.awt.*;
  24 import java.awt.event.*;
  25
  26 import javax.swing.*;
  27 import javax.swing.event.*;
  28
  29 public class GPCAPanel extends JInternalFrame
  30 {
  31   JPanel jPanel2 = new JPanel();
  32
  33   JLabel jLabel1 = new JLabel();
  34
  35   JLabel jLabel2 = new JLabel();
  36
  37   JLabel jLabel3 = new JLabel();
  38
  39   protected JComboBox xCombobox = new JComboBox();
  40
  41   protected JComboBox yCombobox = new JComboBox();
  42
  43   protected JComboBox zCombobox = new JComboBox();
  44
  45   protected JButton resetButton = new JButton();
  46
  47   FlowLayout flowLayout1 = new FlowLayout();
  48
  49   BorderLayout borderLayout1 = new BorderLayout();
  50
  51   JMenuBar jMenuBar1 = new JMenuBar();
  52
  53   JMenu fileMenu = new JMenu();
  54
  55   JMenu saveMenu = new JMenu();
  56
  57   protected JMenu scoreMatrixMenu = new JMenu();
  58
  59   JMenuItem eps = new JMenuItem();
  60
  61   JMenuItem png = new JMenuItem();
  62
  63   JMenuItem print = new JMenuItem();
  64
  65   JMenuItem outputValues = new JMenuItem();
  66
  67   JMenuItem outputPoints = new JMenuItem();
  68
  69   JMenuItem outputProjPoints = new JMenuItem();
  70
  71   protected JMenu viewMenu = new JMenu();
  72
  73   protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
  74
  75   JMenuItem bgcolour = new JMenuItem();
  76
  77   JMenuItem originalSeqData = new JMenuItem();
  78
  79   protected JMenu associateViewsMenu = new JMenu();
  80
  81   protected JMenu calcSettings = new JMenu();
  82
  83   protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
  84
  85   protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
  86
  87   protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
  88
  89   protected JLabel statusBar = new JLabel();
  90
  91   protected GridLayout statusPanelLayout = new GridLayout();
  92
  93   protected JPanel statusPanel = new JPanel();
  94
  95   public GPCAPanel()
  96   {
  97     try
  98     {
  99       jbInit();
 100     } catch (Exception e)
 101     {
 102       e.printStackTrace();
 103     }
 104
 105     for (int i = 1; i < 8; i++)
 106     {
 107       xCombobox.addItem("dim " + i);
 108       yCombobox.addItem("dim " + i);
 109       zCombobox.addItem("dim " + i);
 110     }
 111
 112     setJMenuBar(jMenuBar1);
 113   }
 114
 115   private void jbInit() throws Exception
 116   {
 117     this.getContentPane().setLayout(borderLayout1);
 118     jPanel2.setLayout(flowLayout1);
 119     jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
 120     jLabel1.setText("x=");
 121     jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
 122     jLabel2.setText("y=");
 123     jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
 124     jLabel3.setText("z=");
 125     jPanel2.setBackground(Color.white);
 126     jPanel2.setBorder(null);
 127     zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 128     zCombobox.addActionListener(new java.awt.event.ActionListener()
 129     {
 130       public void actionPerformed(ActionEvent e)
 131       {
 132         zCombobox_actionPerformed(e);
 133       }
 134     });
 135     yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 136     yCombobox.addActionListener(new java.awt.event.ActionListener()
 137     {
 138       public void actionPerformed(ActionEvent e)
 139       {
 140         yCombobox_actionPerformed(e);
 141       }
 142     });
 143     xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 144     xCombobox.addActionListener(new java.awt.event.ActionListener()
 145     {
 146       public void actionPerformed(ActionEvent e)
 147       {
 148         xCombobox_actionPerformed(e);
 149       }
 150     });
 151     resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
 152     resetButton.setText(MessageManager.getString("action.reset"));
 153     resetButton.addActionListener(new java.awt.event.ActionListener()
 154     {
 155       @Override
 156       public void actionPerformed(ActionEvent e)
 157       {
 158         resetButton_actionPerformed(e);
 159       }
 160     });
 161     fileMenu.setText(MessageManager.getString("action.file"));
 162     saveMenu.setText(MessageManager.getString("action.save_as"));
 163     eps.setText("EPS");
 164     eps.addActionListener(new ActionListener()
 165     {
 166       public void actionPerformed(ActionEvent e)
 167       {
 168         eps_actionPerformed(e);
 169       }
 170     });
 171     png.setText("PNG");
 172     png.addActionListener(new ActionListener()
 173     {
 174       public void actionPerformed(ActionEvent e)
 175       {
 176         png_actionPerformed(e);
 177       }
 178     });
 179     outputValues.setText(MessageManager.getString("label.output_values"));
 180     outputValues.addActionListener(new ActionListener()
 181     {
 182       public void actionPerformed(ActionEvent e)
 183       {
 184         outputValues_actionPerformed(e);
 185       }
 186     });
 187     outputPoints.setText(MessageManager.getString("label.output_points"));
 188     outputPoints.addActionListener(new ActionListener()
 189     {
 190       public void actionPerformed(ActionEvent e)
 191       {
 192         outputPoints_actionPerformed(e);
 193       }
 194     });
 195     outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
 196     outputProjPoints.addActionListener(new ActionListener()
 197     {
 198       public void actionPerformed(ActionEvent e)
 199       {
 200         outputProjPoints_actionPerformed(e);
 201       }
 202     });
 203     print.addActionListener(new ActionListener()
 204     {
 205       public void actionPerformed(ActionEvent e)
 206       {
 207         print_actionPerformed(e);
 208       }
 209     });
 210     viewMenu.setText(MessageManager.getString("action.view"));
 211     viewMenu.addMenuListener(new MenuListener()
 212     {
 213       public void menuSelected(MenuEvent e)
 214       {
 215         viewMenu_menuSelected();
 216       }
 217
 218       public void menuDeselected(MenuEvent e)
 219       {
 220       }
 221
 222       public void menuCanceled(MenuEvent e)
 223       {
 224       }
 225     });
 226     scoreMatrixMenu.setText(MessageManager.getString("label.select_score_model"));
 227     scoreMatrixMenu.addMenuListener(new MenuListener()
 228     {
 229       public void menuSelected(MenuEvent e)
 230       {
 231         scoreMatrix_menuSelected();
 232       }
 233
 234       public void menuDeselected(MenuEvent e)
 235       {
 236       }
 237
 238       public void menuCanceled(MenuEvent e)
 239       {
 240       }
 241     });
 242     showLabels.setText(MessageManager.getString("label.show_labels"));
 243     showLabels.addActionListener(new ActionListener()
 244     {
 245       public void actionPerformed(ActionEvent e)
 246       {
 247         showLabels_actionPerformed(e);
 248       }
 249     });
 250     print.setText(MessageManager.getString("action.print"));
 251     bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
 252     bgcolour.addActionListener(new ActionListener()
 253     {
 254       public void actionPerformed(ActionEvent e)
 255       {
 256         bgcolour_actionPerformed(e);
 257       }
 258     });
 259     originalSeqData.setText(MessageManager.getString("label.input_data"));
 260     originalSeqData.addActionListener(new ActionListener()
 261     {
 262       public void actionPerformed(ActionEvent e)
 263       {
 264         originalSeqData_actionPerformed(e);
 265       }
 266     });
 267     associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
 268     calcSettings.setText(MessageManager.getString("action.change_params"));
 269     nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
 270     protSetting.setText(MessageManager.getString("label.protein_matrix"));
 271     nuclSetting.addActionListener(new ActionListener()
 272     {
 273
 274       @Override
 275       public void actionPerformed(ActionEvent arg0)
 276       {
 277         nuclSetting_actionPerfomed(arg0);
 278       }
 279     });
 280     protSetting.addActionListener(new ActionListener()
 281     {
 282
 283       @Override
 284       public void actionPerformed(ActionEvent arg0)
 285       {
 286         protSetting_actionPerfomed(arg0);
 287       }
 288     });
 289     jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
 290     jvVersionSetting.addActionListener(new ActionListener()
 291     {
 292       @Override
 293       public void actionPerformed(ActionEvent arg0)
 294       {
 295         jvVersionSetting_actionPerfomed(arg0);
 296       }
 297     });
 298     calcSettings.add(jvVersionSetting);
 299     calcSettings.add(nuclSetting);
 300     calcSettings.add(protSetting);
 301     calcSettings.add(scoreMatrixMenu);
 302     statusPanel.setLayout(statusPanelLayout);
 303     statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
 304     // statusPanel.setBackground(Color.lightGray);
 305     // statusBar.setBackground(Color.lightGray);
 306     // statusPanel.add(statusBar, null);
 307     JPanel panelBar = new JPanel(new BorderLayout());
 308     panelBar.add(jPanel2, BorderLayout.NORTH);
 309     panelBar.add(statusPanel, BorderLayout.SOUTH);
 310     this.getContentPane().add(panelBar, BorderLayout.SOUTH);
 311     jPanel2.add(jLabel1, null);
 312     jPanel2.add(xCombobox, null);
 313     jPanel2.add(jLabel2, null);
 314     jPanel2.add(yCombobox, null);
 315     jPanel2.add(jLabel3, null);
 316     jPanel2.add(zCombobox, null);
 317     jPanel2.add(resetButton, null);
 318     jMenuBar1.add(fileMenu);
 319     jMenuBar1.add(viewMenu);
 320     jMenuBar1.add(calcSettings);
 321     fileMenu.add(saveMenu);
 322     fileMenu.add(outputValues);
 323     fileMenu.add(print);
 324     fileMenu.add(originalSeqData);
 325     fileMenu.add(outputPoints);
 326     fileMenu.add(outputProjPoints);
 327     saveMenu.add(eps);
 328     saveMenu.add(png);
 329     viewMenu.add(showLabels);
 330     viewMenu.add(bgcolour);
 331     viewMenu.add(associateViewsMenu);
 332   }
 333
 334   protected void scoreMatrix_menuSelected()
 335   {
 336     // TODO Auto-generated method stub
 337
 338   }
 339
 340   protected void resetButton_actionPerformed(ActionEvent e)
 341   {
 342     // TODO Auto-generated method stub
 343
 344   }
 345
 346   protected void protSetting_actionPerfomed(ActionEvent arg0)
 347   {
 348     // TODO Auto-generated method stub
 349
 350   }
 351
 352   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
 353   {
 354     // TODO Auto-generated method stub
 355
 356   }
 357
 358   protected void outputPoints_actionPerformed(ActionEvent e)
 359   {
 360     // TODO Auto-generated method stub
 361
 362   }
 363
 364   protected void outputProjPoints_actionPerformed(ActionEvent e)
 365   {
 366     // TODO Auto-generated method stub
 367
 368   }
 369
 370   protected void xCombobox_actionPerformed(ActionEvent e)
 371   {
 372   }
 373
 374   protected void yCombobox_actionPerformed(ActionEvent e)
 375   {
 376   }
 377
 378   protected void zCombobox_actionPerformed(ActionEvent e)
 379   {
 380   }
 381
 382   public void eps_actionPerformed(ActionEvent e)
 383   {
 384
 385   }
 386
 387   public void png_actionPerformed(ActionEvent e)
 388   {
 389
 390   }
 391
 392   public void outputValues_actionPerformed(ActionEvent e)
 393   {
 394
 395   }
 396
 397   public void print_actionPerformed(ActionEvent e)
 398   {
 399
 400   }
 401
 402   public void showLabels_actionPerformed(ActionEvent e)
 403   {
 404
 405   }
 406
 407   public void bgcolour_actionPerformed(ActionEvent e)
 408   {
 409
 410   }
 411
 412   public void originalSeqData_actionPerformed(ActionEvent e)
 413   {
 414
 415   }
 416
 417   public void viewMenu_menuSelected()
 418   {
 419
 420   }
 421
 422   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
 423   {
 424     // TODO Auto-generated method stub
 425
 426   }
 427 }