src/jalview/jbgui/GPCAPanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
   3  * Copyright (C) 2015 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.MessageManager;
  24
  25 import java.awt.BorderLayout;
  26 import java.awt.Color;
  27 import java.awt.FlowLayout;
  28 import java.awt.GridLayout;
  29 import java.awt.event.ActionEvent;
  30 import java.awt.event.ActionListener;
  31
  32 import javax.swing.JButton;
  33 import javax.swing.JCheckBoxMenuItem;
  34 import javax.swing.JComboBox;
  35 import javax.swing.JInternalFrame;
  36 import javax.swing.JLabel;
  37 import javax.swing.JMenu;
  38 import javax.swing.JMenuBar;
  39 import javax.swing.JMenuItem;
  40 import javax.swing.JPanel;
  41 import javax.swing.event.MenuEvent;
  42 import javax.swing.event.MenuListener;
  43
  44 public class GPCAPanel extends JInternalFrame
  45 {
  46   JPanel jPanel2 = new JPanel();
  47
  48   JLabel jLabel1 = new JLabel();
  49
  50   JLabel jLabel2 = new JLabel();
  51
  52   JLabel jLabel3 = new JLabel();
  53
  54   protected JComboBox xCombobox = new JComboBox();
  55
  56   protected JComboBox yCombobox = new JComboBox();
  57
  58   protected JComboBox zCombobox = new JComboBox();
  59
  60   protected JButton resetButton = new JButton();
  61
  62   FlowLayout flowLayout1 = new FlowLayout();
  63
  64   BorderLayout borderLayout1 = new BorderLayout();
  65
  66   JMenuBar jMenuBar1 = new JMenuBar();
  67
  68   JMenu fileMenu = new JMenu();
  69
  70   JMenu saveMenu = new JMenu();
  71
  72   protected JMenu scoreMatrixMenu = new JMenu();
  73
  74   JMenuItem eps = new JMenuItem();
  75
  76   JMenuItem png = new JMenuItem();
  77
  78   JMenuItem print = new JMenuItem();
  79
  80   JMenuItem outputValues = new JMenuItem();
  81
  82   JMenuItem outputPoints = new JMenuItem();
  83
  84   JMenuItem outputProjPoints = new JMenuItem();
  85
  86   protected JMenu viewMenu = new JMenu();
  87
  88   protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
  89
  90   JMenuItem bgcolour = new JMenuItem();
  91
  92   JMenuItem originalSeqData = new JMenuItem();
  93
  94   protected JMenu associateViewsMenu = new JMenu();
  95
  96   protected JMenu calcSettings = new JMenu();
  97
  98   protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
  99
 100   protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
 101
 102   protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
 103
 104   protected JLabel statusBar = new JLabel();
 105
 106   protected GridLayout statusPanelLayout = new GridLayout();
 107
 108   protected JPanel statusPanel = new JPanel();
 109
 110   public GPCAPanel()
 111   {
 112     try
 113     {
 114       jbInit();
 115     } catch (Exception e)
 116     {
 117       e.printStackTrace();
 118     }
 119
 120     for (int i = 1; i < 8; i++)
 121     {
 122       xCombobox.addItem("dim " + i);
 123       yCombobox.addItem("dim " + i);
 124       zCombobox.addItem("dim " + i);
 125     }
 126
 127     setJMenuBar(jMenuBar1);
 128   }
 129
 130   private void jbInit() throws Exception
 131   {
 132     this.getContentPane().setLayout(borderLayout1);
 133     jPanel2.setLayout(flowLayout1);
 134     jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
 135     jLabel1.setText("x=");
 136     jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
 137     jLabel2.setText("y=");
 138     jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
 139     jLabel3.setText("z=");
 140     jPanel2.setBackground(Color.white);
 141     jPanel2.setBorder(null);
 142     zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 143     zCombobox.addActionListener(new java.awt.event.ActionListener()
 144     {
 145       public void actionPerformed(ActionEvent e)
 146       {
 147         zCombobox_actionPerformed(e);
 148       }
 149     });
 150     yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 151     yCombobox.addActionListener(new java.awt.event.ActionListener()
 152     {
 153       public void actionPerformed(ActionEvent e)
 154       {
 155         yCombobox_actionPerformed(e);
 156       }
 157     });
 158     xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 159     xCombobox.addActionListener(new java.awt.event.ActionListener()
 160     {
 161       public void actionPerformed(ActionEvent e)
 162       {
 163         xCombobox_actionPerformed(e);
 164       }
 165     });
 166     resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
 167     resetButton.setText(MessageManager.getString("action.reset"));
 168     resetButton.addActionListener(new java.awt.event.ActionListener()
 169     {
 170       @Override
 171       public void actionPerformed(ActionEvent e)
 172       {
 173         resetButton_actionPerformed(e);
 174       }
 175     });
 176     fileMenu.setText(MessageManager.getString("action.file"));
 177     saveMenu.setText(MessageManager.getString("action.save_as"));
 178     eps.setText("EPS");
 179     eps.addActionListener(new ActionListener()
 180     {
 181       public void actionPerformed(ActionEvent e)
 182       {
 183         eps_actionPerformed(e);
 184       }
 185     });
 186     png.setText("PNG");
 187     png.addActionListener(new ActionListener()
 188     {
 189       public void actionPerformed(ActionEvent e)
 190       {
 191         png_actionPerformed(e);
 192       }
 193     });
 194     outputValues.setText(MessageManager.getString("label.output_values"));
 195     outputValues.addActionListener(new ActionListener()
 196     {
 197       public void actionPerformed(ActionEvent e)
 198       {
 199         outputValues_actionPerformed(e);
 200       }
 201     });
 202     outputPoints.setText(MessageManager.getString("label.output_points"));
 203     outputPoints.addActionListener(new ActionListener()
 204     {
 205       public void actionPerformed(ActionEvent e)
 206       {
 207         outputPoints_actionPerformed(e);
 208       }
 209     });
 210     outputProjPoints.setText(MessageManager
 211             .getString("label.output_transformed_points"));
 212     outputProjPoints.addActionListener(new ActionListener()
 213     {
 214       public void actionPerformed(ActionEvent e)
 215       {
 216         outputProjPoints_actionPerformed(e);
 217       }
 218     });
 219     print.addActionListener(new ActionListener()
 220     {
 221       public void actionPerformed(ActionEvent e)
 222       {
 223         print_actionPerformed(e);
 224       }
 225     });
 226     viewMenu.setText(MessageManager.getString("action.view"));
 227     viewMenu.addMenuListener(new MenuListener()
 228     {
 229       public void menuSelected(MenuEvent e)
 230       {
 231         viewMenu_menuSelected();
 232       }
 233
 234       public void menuDeselected(MenuEvent e)
 235       {
 236       }
 237
 238       public void menuCanceled(MenuEvent e)
 239       {
 240       }
 241     });
 242     scoreMatrixMenu.setText(MessageManager
 243             .getString("label.select_score_model"));
 244     scoreMatrixMenu.addMenuListener(new MenuListener()
 245     {
 246       public void menuSelected(MenuEvent e)
 247       {
 248         scoreMatrix_menuSelected();
 249       }
 250
 251       public void menuDeselected(MenuEvent e)
 252       {
 253       }
 254
 255       public void menuCanceled(MenuEvent e)
 256       {
 257       }
 258     });
 259     showLabels.setText(MessageManager.getString("label.show_labels"));
 260     showLabels.addActionListener(new ActionListener()
 261     {
 262       public void actionPerformed(ActionEvent e)
 263       {
 264         showLabels_actionPerformed(e);
 265       }
 266     });
 267     print.setText(MessageManager.getString("action.print"));
 268     bgcolour.setText(MessageManager.getString("action.background_colour"));
 269     bgcolour.addActionListener(new ActionListener()
 270     {
 271       public void actionPerformed(ActionEvent e)
 272       {
 273         bgcolour_actionPerformed(e);
 274       }
 275     });
 276     originalSeqData.setText(MessageManager.getString("label.input_data"));
 277     originalSeqData.addActionListener(new ActionListener()
 278     {
 279       public void actionPerformed(ActionEvent e)
 280       {
 281         originalSeqData_actionPerformed(e);
 282       }
 283     });
 284     associateViewsMenu.setText(MessageManager
 285             .getString("label.associate_nodes_with"));
 286     calcSettings.setText(MessageManager.getString("action.change_params"));
 287     nuclSetting
 288             .setText(MessageManager.getString("label.nucleotide_matrix"));
 289     protSetting.setText(MessageManager.getString("label.protein_matrix"));
 290     nuclSetting.addActionListener(new ActionListener()
 291     {
 292
 293       @Override
 294       public void actionPerformed(ActionEvent arg0)
 295       {
 296         nuclSetting_actionPerfomed(arg0);
 297       }
 298     });
 299     protSetting.addActionListener(new ActionListener()
 300     {
 301
 302       @Override
 303       public void actionPerformed(ActionEvent arg0)
 304       {
 305         protSetting_actionPerfomed(arg0);
 306       }
 307     });
 308     jvVersionSetting.setText(MessageManager
 309             .getString("label.jalview_pca_calculation"));
 310     jvVersionSetting.addActionListener(new ActionListener()
 311     {
 312       @Override
 313       public void actionPerformed(ActionEvent arg0)
 314       {
 315         jvVersionSetting_actionPerfomed(arg0);
 316       }
 317     });
 318     calcSettings.add(jvVersionSetting);
 319     calcSettings.add(nuclSetting);
 320     calcSettings.add(protSetting);
 321     calcSettings.add(scoreMatrixMenu);
 322     statusPanel.setLayout(statusPanelLayout);
 323     statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
 324     // statusPanel.setBackground(Color.lightGray);
 325     // statusBar.setBackground(Color.lightGray);
 326     // statusPanel.add(statusBar, null);
 327     JPanel panelBar = new JPanel(new BorderLayout());
 328     panelBar.add(jPanel2, BorderLayout.NORTH);
 329     panelBar.add(statusPanel, BorderLayout.SOUTH);
 330     this.getContentPane().add(panelBar, BorderLayout.SOUTH);
 331     jPanel2.add(jLabel1, null);
 332     jPanel2.add(xCombobox, null);
 333     jPanel2.add(jLabel2, null);
 334     jPanel2.add(yCombobox, null);
 335     jPanel2.add(jLabel3, null);
 336     jPanel2.add(zCombobox, null);
 337     jPanel2.add(resetButton, null);
 338     jMenuBar1.add(fileMenu);
 339     jMenuBar1.add(viewMenu);
 340     jMenuBar1.add(calcSettings);
 341     fileMenu.add(saveMenu);
 342     fileMenu.add(outputValues);
 343     fileMenu.add(print);
 344     fileMenu.add(originalSeqData);
 345     fileMenu.add(outputPoints);
 346     fileMenu.add(outputProjPoints);
 347     saveMenu.add(eps);
 348     saveMenu.add(png);
 349     viewMenu.add(showLabels);
 350     viewMenu.add(bgcolour);
 351     viewMenu.add(associateViewsMenu);
 352   }
 353
 354   protected void scoreMatrix_menuSelected()
 355   {
 356     // TODO Auto-generated method stub
 357
 358   }
 359
 360   protected void resetButton_actionPerformed(ActionEvent e)
 361   {
 362     // TODO Auto-generated method stub
 363
 364   }
 365
 366   protected void protSetting_actionPerfomed(ActionEvent arg0)
 367   {
 368     // TODO Auto-generated method stub
 369
 370   }
 371
 372   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
 373   {
 374     // TODO Auto-generated method stub
 375
 376   }
 377
 378   protected void outputPoints_actionPerformed(ActionEvent e)
 379   {
 380     // TODO Auto-generated method stub
 381
 382   }
 383
 384   protected void outputProjPoints_actionPerformed(ActionEvent e)
 385   {
 386     // TODO Auto-generated method stub
 387
 388   }
 389
 390   protected void xCombobox_actionPerformed(ActionEvent e)
 391   {
 392   }
 393
 394   protected void yCombobox_actionPerformed(ActionEvent e)
 395   {
 396   }
 397
 398   protected void zCombobox_actionPerformed(ActionEvent e)
 399   {
 400   }
 401
 402   public void eps_actionPerformed(ActionEvent e)
 403   {
 404
 405   }
 406
 407   public void png_actionPerformed(ActionEvent e)
 408   {
 409
 410   }
 411
 412   public void outputValues_actionPerformed(ActionEvent e)
 413   {
 414
 415   }
 416
 417   public void print_actionPerformed(ActionEvent e)
 418   {
 419
 420   }
 421
 422   public void showLabels_actionPerformed(ActionEvent e)
 423   {
 424
 425   }
 426
 427   public void bgcolour_actionPerformed(ActionEvent e)
 428   {
 429
 430   }
 431
 432   public void originalSeqData_actionPerformed(ActionEvent e)
 433   {
 434
 435   }
 436
 437   public void viewMenu_menuSelected()
 438   {
 439
 440   }
 441
 442   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
 443   {
 444     // TODO Auto-generated method stub
 445
 446   }
 447 }