2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
3 * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.jbgui;
21 import java.awt.event.*;
24 import javax.swing.event.*;
26 public class GPCAPanel extends JInternalFrame
28 JPanel jPanel2 = new JPanel();
30 JLabel jLabel1 = new JLabel();
32 JLabel jLabel2 = new JLabel();
34 JLabel jLabel3 = new JLabel();
36 protected JComboBox xCombobox = new JComboBox();
38 protected JComboBox yCombobox = new JComboBox();
40 protected JComboBox zCombobox = new JComboBox();
42 FlowLayout flowLayout1 = new FlowLayout();
44 BorderLayout borderLayout1 = new BorderLayout();
46 JMenuBar jMenuBar1 = new JMenuBar();
48 JMenu fileMenu = new JMenu();
50 JMenu saveMenu = new JMenu();
52 JMenuItem eps = new JMenuItem();
54 JMenuItem png = new JMenuItem();
56 JMenuItem print = new JMenuItem();
58 JMenuItem outputValues = new JMenuItem();
60 JMenuItem outputPoints = new JMenuItem();
62 JMenuItem outputProjPoints = new JMenuItem();
64 protected JMenu viewMenu = new JMenu();
66 protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
68 JMenuItem bgcolour = new JMenuItem();
70 JMenuItem originalSeqData = new JMenuItem();
72 protected JMenu associateViewsMenu = new JMenu();
74 protected JMenu calcSettings=new JMenu();
75 JMenuItem nuclSetting=new JMenuItem();
76 JMenuItem protSetting=new JMenuItem();
87 for (int i = 1; i < 8; i++)
89 xCombobox.addItem("dim " + i);
90 yCombobox.addItem("dim " + i);
91 zCombobox.addItem("dim " + i);
94 setJMenuBar(jMenuBar1);
97 private void jbInit() throws Exception
99 this.getContentPane().setLayout(borderLayout1);
100 jPanel2.setLayout(flowLayout1);
101 jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
102 jLabel1.setText("x=");
103 jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
104 jLabel2.setText("y=");
105 jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
106 jLabel3.setText("z=");
107 jPanel2.setBackground(Color.white);
108 jPanel2.setBorder(null);
109 zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
110 zCombobox.addActionListener(new java.awt.event.ActionListener()
112 public void actionPerformed(ActionEvent e)
114 zCombobox_actionPerformed(e);
117 yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
118 yCombobox.addActionListener(new java.awt.event.ActionListener()
120 public void actionPerformed(ActionEvent e)
122 yCombobox_actionPerformed(e);
125 xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
126 xCombobox.addActionListener(new java.awt.event.ActionListener()
128 public void actionPerformed(ActionEvent e)
130 xCombobox_actionPerformed(e);
133 fileMenu.setText("File");
134 saveMenu.setText("Save as");
136 eps.addActionListener(new ActionListener()
138 public void actionPerformed(ActionEvent e)
140 eps_actionPerformed(e);
144 png.addActionListener(new ActionListener()
146 public void actionPerformed(ActionEvent e)
148 png_actionPerformed(e);
151 outputValues.setText("Output Values...");
152 outputValues.addActionListener(new ActionListener()
154 public void actionPerformed(ActionEvent e)
156 outputValues_actionPerformed(e);
159 outputPoints.setText("Output points...");
160 outputPoints.addActionListener(new ActionListener()
162 public void actionPerformed(ActionEvent e)
164 outputPoints_actionPerformed(e);
167 outputProjPoints.setText("Output transformed points...");
168 outputProjPoints.addActionListener(new ActionListener()
170 public void actionPerformed(ActionEvent e)
172 outputProjPoints_actionPerformed(e);
175 print.addActionListener(new ActionListener()
177 public void actionPerformed(ActionEvent e)
179 print_actionPerformed(e);
182 viewMenu.setText("View");
183 viewMenu.addMenuListener(new MenuListener()
185 public void menuSelected(MenuEvent e)
187 viewMenu_menuSelected();
190 public void menuDeselected(MenuEvent e)
194 public void menuCanceled(MenuEvent e)
198 showLabels.setText("Show Labels");
199 showLabels.addActionListener(new ActionListener()
201 public void actionPerformed(ActionEvent e)
203 showLabels_actionPerformed(e);
206 print.setText("Print");
207 bgcolour.setText("Background Colour...");
208 bgcolour.addActionListener(new ActionListener()
210 public void actionPerformed(ActionEvent e)
212 bgcolour_actionPerformed(e);
215 originalSeqData.setText("Input Data...");
216 originalSeqData.addActionListener(new ActionListener()
218 public void actionPerformed(ActionEvent e)
220 originalSeqData_actionPerformed(e);
223 associateViewsMenu.setText("Associate Nodes With");
224 calcSettings.setText("Change Parameters");
225 nuclSetting.setText("Nucleotide matrix");
226 protSetting.setText("Protein matrix");
227 nuclSetting.addActionListener(new ActionListener()
231 public void actionPerformed(ActionEvent arg0)
233 nuclSetting_actionPerfomed(arg0);
236 protSetting.addActionListener(new ActionListener()
240 public void actionPerformed(ActionEvent arg0)
242 protSetting_actionPerfomed(arg0);
244 });calcSettings.add(nuclSetting);
245 calcSettings.add(protSetting);
248 this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
249 jPanel2.add(jLabel1, null);
250 jPanel2.add(xCombobox, null);
251 jPanel2.add(jLabel2, null);
252 jPanel2.add(yCombobox, null);
253 jPanel2.add(jLabel3, null);
254 jPanel2.add(zCombobox, null);
255 jMenuBar1.add(fileMenu);
256 jMenuBar1.add(viewMenu);
257 jMenuBar1.add(calcSettings);
258 fileMenu.add(saveMenu);
259 fileMenu.add(outputValues);
261 fileMenu.add(originalSeqData);
262 fileMenu.add(outputPoints);
263 fileMenu.add(outputProjPoints);
266 viewMenu.add(showLabels);
267 viewMenu.add(bgcolour);
268 viewMenu.add(associateViewsMenu);
271 protected void protSetting_actionPerfomed(ActionEvent arg0)
273 // TODO Auto-generated method stub
277 protected void nuclSetting_actionPerfomed(ActionEvent arg0)
279 // TODO Auto-generated method stub
283 protected void outputPoints_actionPerformed(ActionEvent e)
285 // TODO Auto-generated method stub
289 protected void outputProjPoints_actionPerformed(ActionEvent e)
291 // TODO Auto-generated method stub
295 protected void xCombobox_actionPerformed(ActionEvent e)
299 protected void yCombobox_actionPerformed(ActionEvent e)
303 protected void zCombobox_actionPerformed(ActionEvent e)
307 public void eps_actionPerformed(ActionEvent e)
312 public void png_actionPerformed(ActionEvent e)
317 public void outputValues_actionPerformed(ActionEvent e)
322 public void print_actionPerformed(ActionEvent e)
327 public void showLabels_actionPerformed(ActionEvent e)
332 public void bgcolour_actionPerformed(ActionEvent e)
337 public void originalSeqData_actionPerformed(ActionEvent e)
342 public void viewMenu_menuSelected()